Ramlibacter tataouinensis: Rta_17250
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Entry
Rta_17250 CDS
T01544
Symbol
mfd
Name
(GenBank) Candidate transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rta
Ramlibacter tataouinensis
Pathway
rta03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rta00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Rta_17250 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rta03400
]
Rta_17250 (mfd)
Enzymes [BR:
rta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rta_17250 (mfd)
DNA repair and recombination proteins [BR:
rta03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Rta_17250 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
AEG92815
UniProt:
F5XVQ2
LinkDB
All DBs
Position
complement(1809499..1812990)
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AA seq
1163 aa
AA seq
DB search
MYCAPDPMDLPKLSAGKRFALPRPVGSADALLLARLAERDKAAGQRTAIVTSDATDAQRL
LDEFAFFSPDLRCCLFPDWETLPYDSFSPHQDLISERLATLWRISQGEADVVIVPATTAL
YRLAPPSFLAGYTFHFKVKQQLQEAKLRSQLTLAGYSHVTQVVSPGEYAVRGGLIDLFPM
GSPVPYRVDLFDDEIDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDDEARAKFRSRWREL
LEGDPTKSRIYKDIGAGVATAGIEYYLPLFFEETATVFDYLGAQATLVLHGELEPAFQRF
WQDTRDRYRLMQGDPERPVLPPEALFLTTEQFFTQANAHAQLAVRPTVADVADNPWFQKL
EDLSVVRGAEEPLARLKAHLRDTPQRVLVLAESDGRRESLLDFLRASHLAPPAFDSLEEF
QASPEKLGIATAPLAQGFAWLEQGIDFVTETELFAAGPTTRRRKKQEQVSDVEALIKDLS
ELNIGDPVVHAQHGIGRYRGLVNMDLGQGMDAQGRPLVQEMLHLEYADKATLYVPVSQLH
QISRYTGVSADEAPLHKLGSGQWEKARRKAAEQVRDTAAELLNIYARRAARQGHAFRFSA
QDYEQFANDFGFEETADQNAAIHAVIQDMISPQPMDRLVCGDVGFGKTEVALRAAFIAVT
GGKQVAFLAPTTLLAEQHYQTLVDRFSKWPVKVAEVSRFRSGKEVSATLKGLADGSIDIV
VGTHKLLSESTKFKHLGLLIIDEEHRFGVRHKEAMKALRAEVDVLTLTATPIPRTLGMAL
EGLRDLSVIATAPQRRLAIKTFVRNEGNGVVREAVLRELKRGGQVYFLHNEVETIANRRE
RLEALLPEARIAVAHGQMPERELEKVMRDFVGQRFNVLLCSTIIETGIDVPTANTIIISR
ADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDTESLTKQASQRLEAIQQMEELGSGFYLAM
HDLEIRGAGEVLGENQSGNMLEVGFQMYNEMLAEAVRSLKAGKEPDLLAPLSAATDINLH
APALLPHDYCGDVHLRLSFYKKLATAKTTDQIDGLLEEIVDRFGKLPPQATTLIDVHRLR
VLARPYGVVKVDAAPGVITITFKPNPPVDPMRIIELVQKNRHIKLAGNEKLRIERELKEP
KDRAQMVRDVLRSLGQPKVAEPA
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
ttgtattgcgcccccgaccccatggacctacccaagctttccgccggcaagcgtttcgcc
ctgccccgccccgtcggctcggccgacgcgttgctgctggcccgcctggccgagcgcgac
aaggcggccggccagcggaccgccatcgtcaccagcgacgccaccgacgcgcagcgcctg
ctggacgagttcgccttcttctcgcccgatctgcgctgctgcctgttcccggactgggag
accctgccctacgacagcttctcgccgcaccaggacctgatcagcgagcggctggccacg
ctgtggcgcatctcccagggcgaggccgacgtggtgatcgttcccgccaccaccgcgctg
taccggctggcgccgccctccttcctggccggctacaccttccacttcaaggtcaagcag
cagctgcaggaggccaagctgcgctcgcagctcacgctggccggctacagccacgtcacc
caggtcgtgagcccgggggagtacgcggtgcgcggcggcctgatcgacctgttccccatg
ggctcgccggtgccctaccgggtggacctgttcgacgacgagatcgattccatccgcacc
ttcgacccggacagccagcgcagcctctatcccgtgcccgaggtgcgcctgctgccgggc
cgcgagttccccatggacgacgaggcccgggccaagttcaggagccgctggcgcgagctg
ctggagggcgacccgaccaagagccgcatctacaaggacatcggggcaggcgtagccacc
gccggcatcgagtactacctgccgctgttcttcgaggagacggccacggtgttcgactac
ctgggcgcccaggcgacgctggtgctgcacggcgagctggagccggcgttccagcgcttc
tggcaggacacgcgggaccgctaccggctgatgcagggcgatccggagcggccggtgctg
ccgcccgaagcgctgttcctgaccaccgagcagttcttcacccaggccaacgcgcacgcg
caactggccgtccgcccgacggtcgccgacgtggcggacaacccctggttccagaagctg
gaggacctgtcggtggtgcgcggcgccgaggagccgctggcgcgcctgaaggcccatctg
cgcgacacgccccagcgcgtgctggtgctggccgagagcgacggccggcgcgagagcctg
ctggacttcctgcgcgccagccatctcgcgcccccggccttcgactcgctggaggagttc
caggccagccccgagaagctgggcatcgccaccgccccgctggcccagggcttcgcctgg
ctcgagcaaggcatcgacttcgtcaccgagaccgagctgtttgccgccggcccgaccacg
cgccggcgcaagaagcaggagcaggtcagcgacgtcgaggccctgatcaaggacctgtcc
gagctgaacatcggcgacccggtggtccacgcccagcacggcatcggccgctaccggggc
ctggtcaacatggacctgggccagggcatggacgcgcagggccgtcccctggtacaggag
atgctgcacctggagtacgccgacaaggccacgctgtacgtgccggtcagccagctgcac
cagatcagccgctacaccggcgtgtcggccgacgaggcgccgctgcacaagctgggctcc
ggacagtgggagaaagcccggcgcaaggccgccgagcaggtgcgcgacacggccgccgag
ctgctcaacatctatgcccgccgcgccgcgcgccagggccatgccttccgcttctcggcg
caggactatgagcagttcgccaacgacttcggcttcgaggagacggccgaccagaacgcg
gccatccacgccgtcatccaggacatgatctcgccccagcccatggaccggctggtgtgc
ggcgacgtgggcttcggcaagaccgaggtggcactgcgcgcggccttcatcgccgtgacc
ggcggcaagcaggtggccttcctggcgccgaccacgctgctggccgagcagcactaccag
acgctggtggaccgcttttccaagtggccggtgaaggtggcggaggtgtcgcgcttccgt
tccggcaaggaggtgtcggccacgctcaagggcctggccgacggcagcatcgacatcgtg
gtcggcacgcacaagctgctgtcggagtcgaccaagttcaagcacctgggcctgctcatc
atcgacgaggagcaccgcttcggcgtgcgccacaaggaggcgatgaaggcgctgcgcgcc
gaggtggacgtgctcacgctcaccgccacgcccatcccgcgcacgctaggcatggcgctg
gaaggcctgcgcgacctgtcggtgatcgccaccgcgccgcagcggcgcctggcgatcaag
accttcgtgcgcaacgagggcaacggcgtggtgcgcgaagcggtgctgcgcgagctcaag
cgcggcggccaggtctatttcctgcacaacgaggtggaaaccatagcgaaccggcgcgag
cggctggaggcgctgctgcccgaggcgcgcatcgccgtggcccacggccagatgcccgag
cgcgagctggagaaggtgatgcgcgacttcgtgggccagcgcttcaacgtgctgctgtgc
tcgaccatcatcgagaccggcatcgacgtgcccacggccaacaccatcatcatcagccgc
gccgacaagttcggcctggcccagctgcaccagctgcgcggccgtgtcggccgcagccac
caccaggcctacgcctacctgatggtgccggacaccgagagcctgaccaagcaggcctcg
cagcggctggaagcgatccagcagatggaggagctgggctcgggcttctacctggccatg
cacgacctggagatccgcggcgccggcgaagtgctgggtgagaaccagagcggcaacatg
ctggaggtgggcttccaaatgtacaacgagatgctggccgaggccgtgcgcagcctcaag
gccggcaaggaacccgacctgctggcaccgctgtcggccgccaccgacatcaacctgcac
gcgcccgccctgctgccccatgactactgcggcgacgtgcacctgcgactgtcgttctac
aagaagctggcgacggccaagaccaccgaccagatcgacggcctgctggaggagatcgtc
gaccgcttcggcaagctgccgccgcaggctacgaccctgatcgacgtgcaccggctgcgg
gtgctggcgcggccctacggcgtggtcaaggtggatgccgcgcccggcgtcatcaccatc
accttcaagcccaacccgcccgtcgacccgatgcgcatcatcgagctggtgcagaagaac
cgccacatcaagctggcgggcaacgagaagctgcgcatcgagcgcgagctcaaggagccc
aaggaccgggcccagatggtgcgcgacgtgctgcgttcgctggggcagccgaaggtggcg
gagccggcctga
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integrated database retrieval system
