Ramlibacter tataouinensis: Rta_32070
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Entry
Rta_32070 CDS
T01544
Symbol
recJ
Name
(GenBank) Candidate single-stranded DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rta
Ramlibacter tataouinensis
Pathway
rta03410
Base excision repair
rta03430
Mismatch repair
rta03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rta00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Rta_32070 (recJ)
03430 Mismatch repair
Rta_32070 (recJ)
03440 Homologous recombination
Rta_32070 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rta03400
]
Rta_32070 (recJ)
DNA repair and recombination proteins [BR:
rta03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Rta_32070 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Rta_32070 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Rta_32070 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
AEG94318
UniProt:
F5XXZ3
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All DBs
Position
3415974..3417695
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AA seq
573 aa
AA seq
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MKIIARDIPPRAAWALEQAGIHPLLARLFAARGVLAKEELDDGLARLLPPAGLRGVQDAA
VLLADAIAARRRLCIVADYDCDGATACAVGVRGLRLLGATQVDYLVPDRVADGYGLTPAI
ARRVHARGADLLITVDNGIASVEGVAAANALGLQVLVTDHHLPGAQLPPAAVIVNPNQPE
CGFPSKCIAGVGVMFYVLLALRAELRARGVFTNDSQPKLDALLPLVALGTVADVVKLDAN
NRRLVAQGLKRIRAGQMPCGVAALFQAAGRSAQAATSFDFGFALGPRINAAGRLADMTLG
IECLLTDDAARADELARQLDAINRERRDIEGGMREQAMEVAQALFDEGSMGEEGPPAAIC
VFDPEFHEGVVGIVASRIKERLHRPTFVFAASQAPGKEHELKGSGRSIPGFHLRDALDLV
AKRHPGVLLRFGGHAMAAGCTIAEEHFDTFEQALNQVAREWLDAATLQRRLHTDGPLAPE
YRRADLVDTLHREVWGQGFAPPVFSEEVEILSQRLVGEKHLALKIRHQGQPVDGIWFGRT
EPLPARVVLAFRLDADEWQGTRRVRFLVEGIEA
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgaaaataatcgccagagacattcctccccgcgccgcctgggcgctggagcaggccggc
atccacccgctgctggcccgcctgttcgccgcccgcggcgtgctggccaaggaggagctc
gacgacggactggcgcgcctgctgccgccggccggcctcaggggcgtgcaggacgccgcc
gtgctgctggccgacgcgatcgccgcgcggcggcgcctgtgcatcgtggccgactacgac
tgcgacggcgctaccgcctgcgccgtgggcgtgcgcggcctgcgcctgctgggcgcgacg
caggtggactacctggtgccggaccgcgtcgccgacggctacggcctcacgcccgccatc
gcccggcgcgtgcatgcgcgcggcgccgacctgctgatcaccgtggacaacggcatcgcc
agcgtggagggcgtggcggccgccaacgccctgggcttgcaggtgctggtgaccgatcac
cacctgcccggcgcgcagctgccgccggccgccgtcatcgtcaaccccaaccagcccgaa
tgcggcttccccagcaagtgcatcgccggcgtgggcgtgatgttctacgtgctgctggcg
ctgcgcgccgagctgcgcgcgcgcggcgtgttcacgaacgacagccaaccgaagctcgat
gcgctgctgccgctggtggccctgggcacggtggccgacgtggtcaagctggacgccaac
aaccgccggctggtggcgcaggggctcaagcgcatccgcgccgggcagatgccctgcggc
gtggcggccctgttccaggcggccggccgcagcgcgcaggccgccaccagcttcgacttc
ggcttcgcgctcgggccgcgcatcaacgccgccggccgtctggccgacatgacgctgggc
atcgaatgcctgctgaccgacgatgcggcccgcgccgacgagctggcgcggcagctggac
gcgatcaaccgcgagcgccgcgacatcgagggcggcatgcgcgagcaggcgatggaggtg
gcgcaggcgctgttcgacgagggcagcatgggcgaggaagggccgccggcggccatctgc
gtgttcgaccccgagttccacgagggagtggtcggcatcgtcgcctcgcgcatcaaggag
cggctgcaccggccgaccttcgtcttcgcggccagccaggcgcccggcaaggagcacgag
ctcaagggctcgggccgctccatcccgggcttccacctgcgcgacgcgctggacctggtg
gccaagcggcaccccggcgtgctgctgcgcttcggcggccatgcgatggccgcgggctgc
acgatcgccgaggagcatttcgacaccttcgagcaggcactgaaccaggtggcgcgcgaa
tggctggatgccgccacgctgcagcgccggctgcacaccgacggtccgctggcgcccgag
taccgccgcgccgacctggtggacacgctgcaccgcgaggtctggggccagggcttcgcg
ccgccggtgttcagcgaggaggtggagatcctgtcgcagcgcctggtgggcgagaagcac
ctggcgctgaagatccgccaccagggccagccggtggacggcatctggttcggccgcacc
gagcccctgccggcacgcgtggtgctggccttccggctggacgcggacgagtggcagggc
acgcgccgcgtgcgcttcctggtcgagggtatcgaggcctag
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