Ramlibacter tataouinensis: Rta_35680
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Entry
Rta_35680 CDS
T01544
Symbol
rpoC
Name
(GenBank) Candidate DNA-directed RNA polymerase, beta subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rta
Ramlibacter tataouinensis
Pathway
rta03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rta00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Rta_35680 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rta03021
]
Rta_35680 (rpoC)
03400 DNA repair and recombination proteins [BR:
rta03400
]
Rta_35680 (rpoC)
Enzymes [BR:
rta01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Rta_35680 (rpoC)
Transcription machinery [BR:
rta03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Rta_35680 (rpoC)
DNA repair and recombination proteins [BR:
rta03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Rta_35680 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AEG94683
UniProt:
F5Y0T9
LinkDB
All DBs
Position
complement(3805037..3809263)
Genome browser
AA seq
1408 aa
AA seq
DB search
MKSLLDLFKQFTPDEHFDAIRIGMASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVITDPGMTPLKKFGIMSEDDFEAKRKEYGDEFVAKM
GAEGIKDLLMGIDLDIEIEKLRGDLTGSEVKVKKNAKRLKVLEAFKKSGIKPEWMVMDVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPTLK
LHQCGLPKLMALELFKPFIFSRLEAMGIATTIKAAKKEVESGTPVVWDILEEVIKEHPVM
LNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSVEAQMEART
LMLASNNVLFPASGEPSIVPSQDVVLGLYYTTREKINGKGEGMIFADVGEVQRALDAREV
ELTTRIAVRLTEWNKDKASGEFTSSTSLVDTTVGRALLSEILPRGLPFSNINKALKKKEI
SKLINVSFRRCGLKETVVFADKLLQNGFRLATQAGISIAIDDMLVPPQKASIIERAEAEV
KEIAQQYASGLVTAGERYNKVVDIWGKAGDEVSKVMMAQLAKEKTTDRNGKDVDQESFNS
IYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVTEEDCTTQEGSLMRAIVEGGEVIESLRDRILG
RTAAEDVLHPETRATLVPAGNMLDEDAIEELEAAGVDEVKVRTALTCATRFGLCARCYGR
DLGRGGLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAIASSVEAKSNGVIGFN
STMRYVTNSKGELVVIARSGEVVIHDEHGRERERHKVPYGATLTVKADQQVKAGTILANW
DPLTRPIITEFAGKVKFENVEEGLTVAKQVDEVTGLSTLVVIDPKRRGSAKVVRPQVKLV
DASGNEVKIPGTDHSVTIGFQVGALIQVRDGQDVGGGEVLARIPIEGQKTRDITGGLPRV
AELFEARSPKDKGVLAEMTGTVSFGKETKGKIRLQITDPEGGVHEELVPKEKNILVHEGQ
VVNKGESVVDGPADPQDILRLLGMEELARYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVVVENPGESGYIAGEQVERSEMLDTNDRLRSEDKIPATYSNLLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAYHQARKAKDAMDEAERRA
IADAEAAELAAVGEAAGASEASEGAAAE
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcgctactcgacctgttcaagcaattcacgccggacgagcatttcgatgccatc
cgcatcggcatggcctcgcccgagaagatccgctcgtggtctttcggcgaggtgaagaag
cccgagaccatcaactaccgcaccttcaagcccgagcgcgacggcctgttctgcgccaag
atcttcgggcccatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgcggcgtgatctgcgagaagtgcggcgtcgaagtcacgcagaccaaggtgcgccgcgag
cgcatgggccacatcgacctggccgcgccctgcgcccacatctggttcctgaagtccctg
ccttcgcgcctgggcctggtgctggacatgacgctgcgcgacatcgagcgcgtgctgtac
ttcgaggcctatgtcatcaccgaccccggcatgaccccgctgaagaagttcggcatcatg
tccgaggacgacttcgaggccaagcgcaaggaatacggtgacgagttcgtcgccaagatg
ggcgccgagggcatcaaggacctgctgatgggcatcgacctcgacatcgagatcgagaag
ctgcgcggcgacctgaccggctcggaagtgaaggtcaagaagaacgccaagcgcctgaag
gtgctggaggccttcaagaagtccggcatcaagcccgagtggatggtgatggacgtgctg
cccgtgctgccgccggacctgcgtccgctggtgccgctggacggcggccgcttcgcgacc
tccgacctgaatgacctgtacagacgcgtgatcaaccgcaactcgcggctgcgccggctg
ctggagctcaaggctcccgagatcatcgcgcgcaacgagaagcgcatgctgcaggaagcc
gtggacagcctgctggacaacggccgccgcggcaaggcgatgacgggcgccaacaagcgc
gctctgaagtcgctggccgacatgatcaagggcaagagcggccgcttccgccagaacctg
ctgggcaagcgcgtcgactactccggccgttccgtcatcaccgtgggcccgaccctcaag
ctgcaccagtgcggcctgcccaagctgatggcactcgaattgttcaagcccttcatcttc
agtcgcctggaggccatgggcatcgccacgaccatcaaggcggcgaagaaggaagtcgaa
tccggcaccccggtggtgtgggacatcctggaagaggtcatcaaggagcacccggtcatg
ctgaaccgggcgcccacgctgcaccgcctgggcatccaggcgttcgagcccatcctgatc
gaaggcaaggcgatccagctgcatccgctggtgtgcgcggccttcaacgccgacttcgac
ggcgaccagatggccgtgcacgtgccgctgtcggtggaagcgcagatggaagcccgcacg
ctgatgctggcctccaacaacgtgctgttcccggcctcgggcgagccgtccatcgtgccg
tcgcaggacgtggtgctgggcctgtactacaccacccgcgagaagatcaacggcaagggc
gagggcatgatcttcgccgatgtcggtgaggtgcagcgcgcgctggatgcgcgcgaggtg
gagctgaccacccgcatcgccgtgcgcctgaccgagtggaacaaggacaaggccagcggc
gagttcacctcgtccacctctctggtggacaccaccgtgggccgcgccctgctgtcggag
atcctgcccaggggcctgcccttctccaacatcaacaaggcgctgaagaagaaggagatc
agcaagctgatcaacgtcagcttccgccgctgcggcctgaaggagaccgtggtcttcgcc
gacaagctgctgcagaacggcttccgcctggccacccaggccggcatctcgatcgccatc
gacgacatgctggtgccgccgcagaaggccagcatcatcgagcgcgccgaggccgaggtg
aaggagatcgcccagcagtacgcctcgggcctggtgacggccggcgagcgctacaacaag
gtggtggacatctggggcaaggccggtgacgaggtgtccaaggtcatgatggcccagctg
gccaaggagaagaccaccgaccgcaacggcaaggacgtggaccaggagtcgttcaactcc
atctacatgatggccgactccggcgcccgcggctcggccgcccagatccgccagctggcg
ggcatgcgcggcctgatggccaagccggacggctcgatcatcgagacgccgatcacggcc
aacttccgcgaaggcctgaacgtgctgcagtacttcatctccacgcacggcgcccgcaag
ggcctggccgacacggcgctgaagaccgcgaactccggctacctgacgcgccgcctggtc
gacgtgacgcaggacctggtcgtgacggaagaggactgcaccacccaggaaggctcgctg
atgcgcgccatcgtcgagggcggcgaggtcatcgaatcgctgcgcgaccggatcctgggc
cgcaccgccgccgaggacgtgctgcaccccgagacccgcgccaccctcgtgccggccggc
aacatgctggacgaggacgccatcgaggagctcgaggcggccggcgtggacgaggtgaag
gtccgcaccgcgctgacctgcgccacccgcttcggcctgtgcgcccgctgctacggccgc
gacctcggccgcggcggcctggtgaacgtgggcgaggcggtgggcgtgatcgccgcacag
tccatcggcgagcccggcacgcagctgaccatgcgcaccttccacatcggtggcgccgcc
tcgcgcgccgccatcgcctcgagcgtggaagccaagtccaacggcgtgatcggcttcaac
agcacgatgcgctacgtgaccaactccaagggcgagctggtggtgatcgcccgttccggc
gaggtcgtgatccacgacgagcacggccgcgagcgtgaacggcacaaggtgccgtacggc
gcgacgctgacggtgaaggccgaccagcaggtcaaggccggcaccatcctggccaactgg
gacccgctgacccgacccatcatcacggaattcgccggcaaggtgaagttcgagaacgtg
gaggagggcctgacggtcgccaagcaggtggacgaggtcaccggcctgtccacgctggtg
gtgatcgaccccaagcgccgcggctcggccaaggtcgtgcgtccgcaggtgaagctggtg
gatgcctccggcaacgaggtgaagatccccggcaccgaccactcggtgaccatcggcttc
caggtcggcgccctgatccaggtgcgcgacggccaggacgtgggcggcggcgaggtgctg
gcccgcatcccgatcgagggccagaagacccgcgacatcacgggcggcctgccgcgcgtg
gccgagctgttcgaagcccgctcgcccaaggacaagggcgtgctggccgagatgaccggc
accgtgtcgttcggcaaggagaccaagggcaagatccgcctgcagatcaccgacccggaa
ggcggcgtgcacgaggagctggtgcccaaggagaagaacatcctggtgcacgaaggccag
gtggtcaacaagggcgagtcggtggtcgatggcccggcggacccgcaggacatcctgcgc
ctgctgggcatggaggagctggcgcgctacatcgtcgacgaggtgcaggacgtctaccgc
ctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcgtgcgccagatgctgcgc
cgcgtcgtggtcgagaacccgggcgagtcgggctacatcgccggcgagcaggtcgagcgc
tcggagatgctggacaccaacgaccggctgcgctccgaggacaagatcccggcgacctac
agcaacctgctgctgggcatcaccaaggcttcgctgtcgaccgactcgttcatctccgcg
gcctccttccaggagaccacccgcgtgctgaccgaggcggcgatcatgggcaagcgcgac
gagctgcgcgggctgaaggagaacgtcatcgtcggccgcctgatccccgcgggcaccggc
atggcctaccaccaggcccgcaaggccaaggacgcgatggacgaggccgagcgccgcgcc
atcgccgatgccgaggccgccgagctggccgcggtgggcgaggctgccggtgcttccgaa
gccagcgagggtgccgccgccgagtaa
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integrated database retrieval system
