Ramlibacter tataouinensis: Rta_35690
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Entry
Rta_35690 CDS
T01544
Symbol
rpoB
Name
(GenBank) Candidate DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rta
Ramlibacter tataouinensis
Pathway
rta03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rta00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Rta_35690 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rta03021
]
Rta_35690 (rpoB)
03400 DNA repair and recombination proteins [BR:
rta03400
]
Rta_35690 (rpoB)
Enzymes [BR:
rta01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Rta_35690 (rpoB)
Transcription machinery [BR:
rta03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Rta_35690 (rpoB)
DNA repair and recombination proteins [BR:
rta03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Rta_35690 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
DNAPolymera_Pol
UbiD
Motif
Other DBs
NCBI-ProteinID:
AEG94684
UniProt:
F5Y0U0
LinkDB
All DBs
Position
complement(3809283..3813395)
Genome browser
AA seq
1370 aa
AA seq
DB search
MAYSYTERKRIRKSFGSRDSVLEVPYLLQMQKDAYTAFLQADMAPQKRTIEGLQAAFDAA
FPIVSHNGFVEMKFIEYNLAKPAFDVRECQTRGLTYASAVRAKVQLIIYDRESSTPQSKV
VKEVKEQEVYMGEVPLMTDKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFS
ARIIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGLTPESILANFFVNDNFRLM
DSGAQMEFVPERLRGEVARFDITDKSGKVVVAKDKRVTARHTRELEQSGTTHISVPEDYL
VGRVVARAIVDQDTGEIIAKANDELTEALLKKLRAAGVQDLQVIYTNELDQGPYISQTLR
IDETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRMKFNAKVGRD
ESTGPMVLTNEDILAVVKILVDLRNGRGEVDDIDHLGNRRVRCVGELAENQYRTGLARIE
KAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLSEITHKRRVSA
LGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFIETPYR
RVADGKVTNEIDYLSAIEEGKYVIAQANAALDKEGRLTGDLVSARERGESVLVTADTIQY
MDVSPAQIVSVAASLVPFLEHDDANRALMGANMQRQAVPVLRPEKAFVGTGIERVSAVDS
GTVVTATRGGVVDYVDATRIVVRVNDEEAAAGEVGVDIYNLIKYQRSNQNTNIHQRPIVK
RGDKIAKGDVVADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISERVVADDRYTSIH
IEELVVMARDTKLGAEEITRDIPNLSEQQLNRLDESGIIYVGAEVMPGDTLVGKVTPKGE
TTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSQGTVIDVQVFTREGIQRDKRAQQIIDDE
LKRFRLDLNDQLRIVEADAFDRIEKLLTGKVANGGPQKLAKGTKIDKAYMASIEKYHWFD
IRPADDEVASQLESIKNSIEQQRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVKRR
LQPGDKMAGRHGNKGVVSKIVPVEDMPYMADGTPCDIVLNPLGVPSRMNVGQVLEVHLGW
AAKGIGQRIGDMLQQQARAAELRRFMDELYNKSGRKEDLAKLADADVLEMAGELAKGIPF
ATPVFDGASEEEIRRMLQLAFPEDVAKAKGLTATRTQAHLYDGRTGDQFERPVTVGYMHV
LKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT
VKSDDVQGRTKVYESIVKGEHAIDAGMPESFNVLVKEIRSLGLDMELERS
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atggcctattcctataccgaacgcaagcgcatccgcaaaagcttcggcagccgcgacagc
gtgctggaagtcccctacctgctccagatgcagaaggacgcttacaccgccttcctgcag
gccgacatggcaccccagaaacgcaccatcgaaggcctccaggccgccttcgatgccgcc
ttccccatcgtctcgcacaacggctttgtcgagatgaagttcatcgaatacaacctggcc
aagcccgcgttcgacgtgcgcgagtgccagacccgcggcctgacctatgcctcggccgtg
cgcgccaaggtccagctgatcatctacgaccgcgagtcctccacgccccagtccaaggtg
gtcaaggaagtgaaggagcaggaagtctacatgggcgaagtgccgctcatgacggacaag
ggctcgttcatcatcaacggcaccgagcgcgtgatcgtctcgcagctgcaccgctcgccc
ggcgtgttcttcgagcacgacaaaggcaaaacgcacagctcgggcaagctgctgttcagc
gcccgcatcatcccgtaccgcggctcctggctggacttcgagttcgaccccaaggacgtg
ctgtacttccgcgtcgaccgtcgccgcaagatgccggtcaccatcctgctcaaggccatc
ggcctgacgcccgagtccatcctggcgaacttcttcgtcaacgacaacttccgcctgatg
gacagcggcgcgcagatggagttcgtgcccgagcgcctgcgcggcgaggtggcccgcttc
gacatcaccgacaagtccggcaaggtcgtcgtggccaaggacaagcgcgtcaccgcccgc
cacacccgcgagctggagcagagcggcaccacgcacatcagcgtgcccgaggactacctc
gtcggccgcgtggtggcgcgcgccatcgtcgaccaggacaccggcgagatcatcgccaag
gccaacgacgagctgaccgaggcactgctgaagaagctgcgcgccgccggcgtgcaggac
ctgcaggtcatctacaccaacgagctcgaccagggcccgtacatcagccagacgctgcgc
atcgacgaaacggtggacgagttcgccgcccgcgtcgccatctaccgcatgatgcgcccc
ggcgagccgccgaccgaggacgcggtgcaggccctgttccagcgcctgttctacaacccg
gacacctacgacctgtcgcgcgtgggccgcatgaagttcaacgccaaggtcgggcgcgac
gagagcaccggccccatggtcctgaccaacgaggacatcctcgccgtggtcaagatcctg
gtggacctgcgcaacggccgcggcgaagtggacgacatcgaccacctgggcaaccgccgc
gtgcgctgcgtcggcgagctggccgagaaccagtaccgcaccggcctggcccgcatcgag
aaggccgtcaaggagcgcctcggccaggccgagcaggaaccgctgatgccgcacgacctg
atcaactccaagccgatctccgcggcgctcaaggagttcttcggcgcctcgcagctgtcg
cagttcatggaccagaccaacccgctgtccgagatcacgcacaagcgccgcgtctcggcc
ctgggcccgggcggcctgacgcgcgagcgcgcgggcttcgaggtgcgcgacgtgcacgtc
acgcactacggccgcgtctgcccgatcgagacgccggaaggccccaacatcggcctgatc
aactcgctggccctgtacgcccgcctgaacgagtacggcttcatcgagacgccgtaccgc
cgggtggcggacggcaaggtcaccaacgagatcgactatctgtcggccatcgaggagggc
aagtacgtcatcgcccaggccaacgcggcgctggacaaggaaggccgcctgaccggcgac
ctggtgtccgcccgcgagcgcggcgaatcggtgctggtgacggccgacaccatccagtac
atggacgtgtcgccggcgcagatcgtgtcggtggccgcctcgctggtgcccttcctggag
cacgacgacgccaaccgcgcgctgatgggcgccaacatgcagcgccaggccgtgccggtg
ctgcgtcccgagaaggccttcgtgggcaccggcatcgagcgcgtctccgcggtcgactcc
ggcaccgtggtcaccgccacccgcggcggcgtggtcgactacgtcgacgccacccgcatc
gtggtgcgcgtgaacgacgaggaagccgcggccggcgaggtcggcgtggacatctacaac
ctgatcaagtaccagcgttccaaccagaacaccaacatccaccagcgtcccatcgtcaag
cgcggcgacaagatcgccaagggcgacgtggtggccgacggcgcctcgaccgacctgggc
gagctcgcgctgggccagaacatgctggtggcgttcatgccctggaacggctacaacttc
gaggactcgatcctgatcagcgagcgcgtggtggccgatgaccgctacacctccatccac
atcgaggagctggtggtgatggcgcgcgacaccaagctgggcgccgaggagatcacccgc
gacatccccaacctgtccgagcagcagctcaaccgcctggacgagagcggcatcatctac
gtgggcgccgaggtcatgccgggcgacacgctggtgggcaaggtcacgcccaagggcgag
accacgctgacgccggaagaaaagctgctgcgcgccatcttcggcgagaaggcctccgac
gtgaaggacacctcgctgcgcgtggaccagggctcgcagggcacggtcatcgacgtgcag
gtgttcacccgcgagggcatccagcgcgacaagcgcgcccagcagatcatcgacgacgaa
ctcaagcgcttccgcctggacctgaacgaccagctgcgcatcgtcgaggccgacgcgttc
gaccgcatcgagaagctgctgaccggcaaggtcgccaacggcggcccgcagaagctggcc
aagggcaccaagatcgacaaggcctacatggcgtcgatcgagaagtaccactggttcgac
atccggcccgcagacgacgaggtggcttcccagctggaatcgatcaagaactcgatcgag
cagcagcgccacagcttcgacctggccttcgaggagaagcgcaagaagctgacccagggc
gacgagctgccggccggcgtgctgaagatggtcaaggtctacctggccgtcaagcgccgc
ctgcagcccggcgacaagatggccggccgccacggcaacaagggcgtggtgtccaagatc
gtcccggtcgaggacatgccctacatggccgacggcacgccgtgcgacatcgtgctcaac
ccgctgggcgtgccttcgcgcatgaacgtgggccaggtgctggaagtgcacctgggctgg
gccgccaagggcatcggccagcgcatcggcgacatgctgcagcagcaggcccgcgcggcc
gaactgcgcaggttcatggacgagctgtacaacaagtcgggccgcaaggaagacctggcc
aagctggcggacgccgacgtgctggagatggccggcgagctggccaagggcatcccgttc
gcgaccccggtgttcgacggtgcttcggaagaagagatccgccgcatgctgcagctggcc
ttcccggaggacgtggccaaggccaagggcctgaccgcgacgcggacccaggcgcatctg
tacgacggccgcaccggcgaccagttcgagcgcccggtcaccgtgggctacatgcacgtg
ctcaagctgcaccacctggtggacgacaagatgcacgcgcgctcgaccggcccgtactcg
ctggtcacgcagcagccgctgggcggcaaggcgcaattcggcggccagcgcttcggcgag
atggaggtgtgggcgctggaggcctatggcgccgcctacacgctgcaggagatgctcacc
gtcaagtccgacgacgtgcagggccgcaccaaggtgtacgagtccatcgtcaagggcgag
cacgccatcgacgccggcatgccggagtcgttcaacgtcctggtcaaggagatccgctcc
ctgggcctggacatggaactcgagcgttcttaa
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