Rathayibacter toxicus WAC3373: APU90_00060
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Entry
APU90_00060 CDS
T04269
Name
(GenBank) RNA helicase
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
rtc
Rathayibacter toxicus WAC3373
Brite
KEGG Orthology (KO) [BR:
rtc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtc03019
]
APU90_00060
Enzymes [BR:
rtc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
APU90_00060
Messenger RNA biogenesis [BR:
rtc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
APU90_00060
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
DEXQc_Suv3
Helicase_C
MTR4-like_stalk
AAA_22
nSTAND3
GAS
MTR4_beta-barrel
Motif
Other DBs
NCBI-ProteinID:
ALS56386
UniProt:
A0A0C5BF49
LinkDB
All DBs
Position
8948..11383
Genome browser
AA seq
811 aa
AA seq
DB search
MKEPSPAERFAAFRNRRGHARVEGFRSRLAFDLDPFQYEACCALDDGRSVLVAAPTGAGK
TAIAEFALHLAMQDKTAKVFYTTPMKALSNQKFQEFVDDYGASEVGLLTGDSNINARARI
VVMTTEVLRNMLYADSDLLGDLAYVVMDEVHYLADRFRGAVWEEVIIHLPQRVRLVSLSA
TVSNAEEFGDWLQTVRGDTEVIVSEERPVPLDQHVFVGGKLIELFDSSGRAERNRVNPEL
ERIAQGGSRAERTAWGSRGARGRGRFPESRADDLMSRAEVVDILSGKNLLPAIFFVFSRA
GCDQAVRQLLRSGVRLTEKHERDEIRVLVEERCRSIHDEDLAVLGYWEWLDGVQRGVAAH
HAGMLPVFKEVVEELFLRRLVRVVFATETLALGINMPARTVVLEKLEKFNGEARVPITPG
EYTQLTGRAGRRGIDVEGHSVIQWRGGMNPQAVASLASRRTYPLNSSFRPSYNMAANLLE
QFGRRRTREILESSFAQFQADRSVVDLARRVRQQEESLDGYVTAMQCHLGDFEQYAAIRR
EISDLERRGAVRGNSPSHAEREKHQSQLANLRRRMKAHPCHACSDREQHARWAERWWKLR
RETDEIERQIRSRTGAIARVFDRITDVLLELGYVRRDDSGELSLTFHGRTLRQIYGERDL
LITECLRRQVWINLDPAGLAAMACCLVFEPRREEGALAERFLPRGAFPVALEKTQLLWAR
IDEVERQHRLPGSAPVSTSLALAMSMWATGRPLDAVLREADLAAGDFVRWTKQTIDVLDQ
LSQVAEGTVARAARSALELIRRGIITYSTVA
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagaaccttcgccggccgagcgcttcgctgcgttccgaaaccgtcggggccacgct
cgcgtcgaaggttttcgttcccggcttgccttcgatcttgacccctttcagtacgaagcc
tgctgcgcactcgatgacggtcgcagcgttctcgtggcggcacctaccggtgccggcaaa
acggcgatagcggagtttgctctccacctcgccatgcaggacaagactgcaaaggtcttt
tacaccacgccgatgaaggcactcagtaaccaaaagtttcaggagttcgtcgacgactac
ggtgcctcagaggttggtctgctcaccggtgactcgaacatcaacgctcgcgcgcgcatc
gtcgtgatgacaactgaagtgttgcgtaacatgctgtacgccgactccgatctcctcgga
gaccttgcctatgtggtcatggacgaggtgcattacctcgctgatcgctttcgcggcgcg
gtgtgggaggaggtcatcattcatcttccgcagcgggtgcggctcgtctcgctcagtgca
acggtatcgaacgcggaagagttcggtgactggttacagaccgtacggggtgacaccgag
gtcatcgtgtcggaggagcgtccggttcctctcgatcaacatgtgttcgtcggcggcaaa
ctcattgagctcttcgattcgtcgggtcgcgccgagcgtaaccgggtcaatcccgagctg
gagcggattgcccagggcggctcgcgagctgagcgcacggcctgggggagtcgtggtgct
cgtggtcgcggacgatttccggagtcgcgcgcggacgatctcatgtcccgcgctgaggtc
gtcgatatcctgtccggtaagaacttacttccggcgattttcttcgtttttagtcgcgct
ggctgtgaccaggccgttcgacagctgttgcgttctggcgtccgcctcacagagaagcac
gagcgcgacgagattcgtgttctcgtggaggaacgctgtcgcagcatccatgatgaggac
ctcgctgtcctcggctactgggaatggctagacggcgtgcaacgcggtgttgccgctcat
cacgccggcatgttgcccgtttttaaagaagtggtcgaggaactcttcctccgtcgtctc
gttcgagtagtttttgccaccgaaaccctcgccctgggtatcaatatgccagctcgcacc
gtcgttctggagaaactcgagaaattcaacggcgaggcgcgtgtgccgatcactccaggg
gagtacacccagctgacggggcgcgccgggcggcgcgggatcgacgtcgagggtcattct
gttatccagtggcgcggagggatgaacccgcaggcggttgcctccctcgcttctcgacgt
acctatccgctgaactctagcttccgtcccagctacaacatggcagcaaatctcctcgag
cagttcggccgtcgccgcacgcgggagatccttgaatcgtcatttgcacagttccaagcc
gaccgttcggtcgtggacctggcgcgccgagtgcggcaacaagaagagtcgcttgacggt
tatgtcaccgcgatgcagtgccatctcggtgacttcgagcagtatgccgctatccgtcgt
gagatcagcgatctcgagcgtcggggcgctgtccgcggcaattctccgtcgcacgccgag
cgcgagaagcatcagagccaactggcgaacctccgtcgacggatgaaggcccacccctgc
catgcctgttccgaccgcgagcagcacgctcgctgggcagagcgctggtggaagcttcgc
cgcgagaccgacgagatcgagcgtcagattcgttcccgtaccggcgctatcgcgcgcgtt
ttcgaccgcattaccgacgtcttgctcgaactcggttatgtccgtcgtgatgattccggc
gaactctcgttgactttccacggtcgcaccctgcgccaaatttacggcgagcgtgacctg
ctcatcaccgaatgtctccgcaggcaggtctggatcaacctcgacccggccggacttgcg
gcgatggcctgctgtctcgttttcgagccgcggcgtgaggagggagctttagctgagcga
tttctgcctcgcggcgcctttccggtggcgctcgaaaaaacgcagttgctctgggcgcgc
atcgacgaggtcgaacgtcagcaccggctgccagggagtgccccggtatcgaccagtctt
gcgctggccatgagcatgtgggccacagggaggccgctcgacgcggttctccgtgaggcc
gacctggcagcgggagatttcgtccgctggaccaagcagaccatcgacgtgcttgaccag
ctctcgcaggtcgctgagggcacagtcgctcgtgccgcacggagtgctctcgaactgata
cggcgaggcatcattacgtattcgacggtcgcatga
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