KEGG   Rathayibacter toxicus WAC3373: APU90_00995
Entry
APU90_00995       CDS       T04269                                 
Name
(GenBank) formamidopyrimidine-DNA glycosylase
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
rtc  Rathayibacter toxicus WAC3373
Pathway
rtc03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:rtc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    APU90_00995
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rtc03400]
    APU90_00995
Enzymes [BR:rtc01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     APU90_00995
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     APU90_00995
DNA repair and recombination proteins [BR:rtc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     APU90_00995
SSDB
Motif
Pfam: Fapy_DNA_glyco H2TH zf-FPG_IleRS Auto_anti-p27 DUF7573 NFACT_N Gln-synt_N_2 MCR DZR
Other DBs
NCBI-ProteinID: ALS56542
UniProt: A0A0C5B9Q3
LinkDB
Position
complement(211967..212875)
AA seq 302 aa
MPELPEVEVVRAGLAPVIAGAVVTTVEVVDIRSLRRHVHPLGGFEQLLTGRVLHAAARRG
KFLWLPTGHDEALLVHLGMSGQVLLRTADAPHERLTRIRITLEHHERGEFALHFVDQRIF
GSMAIDTLRPTADGASGGYAGENAAGPWLRTVPSQVAHIARDPLDPCFDLAGVVAALGRR
RSGIKRALLDQTLVSGIGNIYADESLWAAELHPERSSASLGEARIRRLFAEVRSVFDRAL
AEGGTSFDAQYVNVNGASGYFQRSLHSYGREGQPCDRCGTPLVREKFMNRSSYLCPRCQK
LR
NT seq 909 nt   +upstreamnt  +downstreamnt
atgcccgagctgcccgaggttgaggtggtgcgggcaggccttgcgcccgtcatcgccgga
gcagtggtgaccactgtcgaggtcgtcgatatccggtcgctgaggcgccacgttcatccg
cttggcgggtttgagcagctcctgacgggtcgtgttctgcacgcagcggcgcggcgcggt
aagttcctctggttgccgacggggcacgacgaggcgctgctcgtgcacctcggaatgagc
ggccaggtgctgctgcgcaccgctgacgctcctcatgagcggctgactcgcatccggatc
accctcgaacatcacgagcgcggcgagttcgcgctgcatttcgtcgatcaacggattttc
ggctcgatggctatcgacacgctgcgcccgactgccgacggtgcgtccggtgggtacgcg
ggcgagaacgccgccggtccctggttgcgaaccgtgccctcgcaggtcgcgcatatcgcc
cgcgaccctctcgatccgtgtttcgacctcgccggagttgtcgccgcactcggccgacga
cgcagcggtatcaagcgggcgttgcttgaccagacgctggtcagcgggatcggcaatatt
tatgccgatgagtcgctctgggcggccgaactgcatccggagcgatcgagcgcgtcgctg
ggggaggcgcggattcgccgactcttcgccgaggtgcgttcggtgttcgaccgggcgtta
gcggagggaggcacgagtttcgacgcgcagtacgtcaacgtgaacggtgcctccggctac
ttccagcgatcactacattcatacggccgtgaggggcagccctgtgatcggtgtggtact
ccccttgtgcgcgagaagttcatgaaccgctcgtcgtatctgtgtccccggtgccagaaa
ctcaggtga

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