Rathayibacter toxicus WAC3373: APU90_01420
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Entry
APU90_01420 CDS
T04269
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rtc
Rathayibacter toxicus WAC3373
Pathway
rtc03030
DNA replication
rtc03430
Mismatch repair
rtc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rtc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
APU90_01420
03430 Mismatch repair
APU90_01420
03440 Homologous recombination
APU90_01420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rtc03032
]
APU90_01420
03400 DNA repair and recombination proteins [BR:
rtc03400
]
APU90_01420
Enzymes [BR:
rtc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
APU90_01420
DNA replication proteins [BR:
rtc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
APU90_01420
DNA repair and recombination proteins [BR:
rtc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
APU90_01420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
MCM10_OB
Motif
Other DBs
NCBI-ProteinID:
ALS56608
UniProt:
A0A0U1PRQ7
LinkDB
All DBs
Position
306423..309884
Genome browser
AA seq
1153 aa
AA seq
DB search
MLDGAARITPLIDAAIREGMPALAVTDHGNMFGAFDFWRTATAAGITPIIGTEAYLTPGT
HRSDKTRIRWGNGGGDDVSGSGAYTHMTLLSATTEGMHNLFRLSSRASIEGYYFKPRMDR
ELLAQYSAGLIGTTGCPSGEVQTRLRLGQYDEARQAAAEFRDIFGPGNFFAEIMDHGLDI
ERRVMADVLRLAKDLDLPLVATNDLHYTRASDAASHAALLCVQSGTTLDDPKRFKFDAEE
FYLKTPQEMRQVFRDYPEACDNTLLIAERCDVQFDTSANYMPRFPVPEGETEETWFTKEV
EAGLHKRYPGGITPEVRERADYEINVIRQMGFSGYFLVVADFINWSKRNGIRVGPGRGSG
AGSMAAYAMRITDLDPLRHGLLFERFLNPDRVSMPDFDVDFDDRRRGEVIRYVTDKYGDE
RVAQIVTYGTIKAKQALKDASRVLGFPFGMGEKLTKAMPPTIMGKDIPLTGIIDPEHARY
KEAVDVRTIIAEDPQAKLVFDTALGLENLKRQWGVHAAGVIMSSDPLLDIIPIMKRDQDG
QIVTQFDYPACEALGLMKMDFLGLRNLTIIDDALDNIRANRQQDLVLEDLPLDDPAAYEL
LARGDTLGVFQLDGGPMRGLLRMMKPDNFEDISAVLALYRPGPMGADSHTNYALRKNGLQ
QITPIHPELEEPLAEVLGGTYGLIVYQEQVMSIAQKLAGFTLAQADLLRRAMGKKKKSEL
DKQFENFSAGMVANGYSMKAVTTLWDILLPFSDYAFNKAHSAAYGVVSYWTAYLKAHYPA
EYMAALLTSVGDSKDKMASYLNECRRMGIRVLPPDANESIGIFAAVGADVRFGLGAVRNV
GTNVVETIRAAREEKGRFESFHDFLRKVPLQVANKRTIESLVKAGVFDSLGATRRALFEI
HEDAVEAAVCEKRNEANGQIGFDFDSLWDEPHTTHQVPTRPEWAKRDKLAFEREMLGLYV
SDHPLAGLETELAKHYSTTIADLVTSETMSDGETVVIAGLVTNVQHRMAKTSGNQYGMIQ
VEDFGGEITVLFLGKAYQEFAPALTNDSIVVVRGRVSIRDDGVNLHAFSLLCPELNQDGG
SGPLTISIPDARATTDTVSQLSDVLIRHSGDTEVRLKLIKGDTARIFEVPFPVQVKADLF
GELKSLLGPHCLY
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgctggatggtgcggcacggatcacaccgctcatcgacgcggcaattcgggagggaatg
cccgccctcgccgtgacagaccacggcaacatgttcggcgccttcgatttttggcggacc
gccactgcggcaggtatcacgccgatcatcggaaccgaggcctacttaactcccggcact
catcgctcggacaagactcgcatccgctggggtaacgggggcggggacgacgtctccggt
tccggtgcctacactcatatgaccctgctcagcgcaacgaccgagggaatgcacaatctt
ttccgtctttcctcgcgggcatcaatagagggttactacttcaagccgcggatggaccgc
gaactgctcgcccaatactcagcgggtctgatcggcactaccggctgccccagcggcgag
gtgcagactcgcctccgcctgggccaatatgacgaggcgcgccaggcagccgccgaattc
cgcgatattttcggccccgggaatttcttcgccgaaatcatggaccacggcctcgacatc
gagcggcgtgtgatggctgatgtgcttcgacttgccaaagatctcgatctgccactcgta
gcaacaaacgacctgcattacactcgcgccagcgatgccgcctcgcacgcggctctgctg
tgtgtgcagtcgggtactactctcgatgaccctaagcgttttaagttcgacgctgaggag
ttctacctcaaaacaccgcaggaaatgcgccaggtgtttcgcgattacccggaggcctgc
gacaacacgctcctgatcgctgagcggtgcgatgtacagttcgacacctccgctaactac
atgccccgttttccggtaccggagggcgagacggaggagacttggttcacgaaagaggtc
gaagcgggcctccataagcgttatccaggaggcatcactcccgaagttcgtgagcgcgct
gattatgaaataaatgtcatccgccagatggggttttcgggctactttctggtagtcgcc
gacttcattaactggtcgaagcgcaacggtattcgtgtcggtcccggccgcggctccggt
gccggttcaatggccgcctacgcgatgaggatcacggaccttgatcccttgcgtcacggt
ttactcttcgagcgctttctcaatccggaccgcgtctcgatgcctgactttgacgtcgac
ttcgacgaccgtcgtcgtggcgaggttattcgctatgtcaccgacaaatacggtgatgag
cgggttgcacagattgtcacctacggcacaatcaaggctaagcaggcgcttaaagacgct
tcgcgcgtactcgggttcccgtttggcatgggtgaaaaactcactaaagcgatgccgccc
acgattatgggaaaggatattccactcaccgggatcatcgatcccgagcacgcccgatac
aaagaggctgtggatgtgcgcaccattatcgccgaggatccgcaagcgaaactcgtcttt
gacacggcgctcggactagaaaacctcaagcgacagtggggcgtgcacgcagccggcgtg
atcatgtcaagtgacccgctgctcgacatcatccccatcatgaagcgggaccaggacggc
cagatcgtcacgcagttcgattaccccgcctgcgaagcactcggtctcatgaagatggac
tttttggggctgcgtaatctcacaattattgacgatgccctcgataacattcgagcaaac
agacaacaagatctcgtgctcgaggaccttccgctcgatgacccggcagcctacgaattg
ctcgctcgcggcgacactctgggagtgtttcagctcgatggtgggccgatgcgcgggtta
ctgcgtatgatgaagccggataatttcgaagacatctctgcggtcctggctctgtaccgc
ccaggtcctatgggtgcggactcccataccaattacgccttacgcaaaaacggattgcag
cagatcacgccgattcatcccgagcttgaagagccgctcgcggaagtgcttggcggaacg
tacgggctgattgtctatcaagagcaggtcatgtcgatcgcgcagaagctggcggggttc
actctcgcgcaggcggacttgttgcgtcgcgcgatgggcaaaaagaaaaaatctgagctc
gacaagcagtttgaaaacttttcagcgggtatggtcgccaatggctactcgatgaaggca
gtcacaactctctgggacatcctgttgcccttctctgactatgcctttaataaagcgcac
tctgcagcctacggggttgtctcctactggaccgcatatctcaaggctcactaccccgcg
gaatatatggccgccttactcacgagcgttggcgattctaaagataaaatggcttcctat
cttaatgagtgtcggcggatgggtattagggtactcccgcctgacgcgaatgagtcaatc
ggtatttttgcggcggtcggcgcggatgtccgttttggtttgggagccgtgcgtaatgtc
ggaaccaacgtggtggaaacgattcgcgcagcacgagaagaaaaggggcgttttgagtca
ttccacgactttctccgcaaagtgccgctgcaagtagcgaacaaacgcacaattgaatca
ctggtgaaagcgggagtctttgactccctcggcgcgacccggcgagccctctttgaaata
cacgaagatgctgtcgaggccgctgtctgcgaaaagcggaacgaagcgaacggtcagatt
ggttttgattttgacagtctctgggacgagcctcacactacgcatcaagtacccacacga
ccggagtgggccaagcgcgacaagctcgctttcgagcgggaaatgttggggctttatgtc
tctgaccatccgctcgccggattggagaccgaactagcaaagcactacagtacgacgatc
gctgatctcgtgacatcagagaccatgagcgacggagaaacagtcgtgattgccgggctt
gtcacaaatgttcagcatcgaatggctaaaacctcgggtaaccaatacgggatgattcag
gtagaagatttcggcggcgaaatcaccgtgctgtttttgggtaaggcgtaccaggagttc
gctcccgcactcaccaatgattccatcgtggtagttcgcggacgcgtgagcatacgcgac
gatggcgtgaacctgcatgcgttcagcctcttgtgccccgagctaaatcaagacggaggc
tccgggcccctcaccatttcgattccggatgcacgggcgacaaccgatacggtctcgcag
ctcagcgatgtgctcattcggcactcgggcgataccgaggtgcggctcaaacttatcaaa
ggcgacacggctcgaatctttgaagttcccttcccagtgcaggtaaaagccgacctgttc
ggcgaattgaagagcctactggggccgcactgtctttactga
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