Rathayibacter toxicus WAC3373: APU90_02545
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Entry
APU90_02545 CDS
T04269
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rtc
Rathayibacter toxicus WAC3373
Pathway
rtc03420
Nucleotide excision repair
rtc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rtc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
APU90_02545
03430 Mismatch repair
APU90_02545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rtc03400
]
APU90_02545
Enzymes [BR:
rtc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
APU90_02545
DNA repair and recombination proteins [BR:
rtc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
APU90_02545
MMR (mismatch excision repair)
Other MMR factors
APU90_02545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
PhoH
Motif
Other DBs
NCBI-ProteinID:
ALS56786
UniProt:
A0A0C5BGI8
LinkDB
All DBs
Position
complement(557837..559540)
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AA seq
567 aa
AA seq
DB search
MTTLLDGLDEGQREVAEALLGPVCVLAGAGAGKTRTITHRIAHGVAMGVYTPARVMALTF
TSRAAAELRSRLRVLGAGGVQARTFHAAALSQLSYFWPQLVGGTVPRLVEGKARVLAHAA
ERLRLTVDTATLRDLSAEIEWRKVSALSLEDYASAARTRVLPGQLTLEQTVALLEEYEGL
KDQRRQIDFEDVLLATAGMLESEPAMAMQVREQYRFFVVDEYQDVSPLQQRLLELWLGDR
SDLCVVGDASQTIYSFAGARAEYLLNFASRWPGATMVRLEDNYRSTTPIVQMANRLMRGR
PGALVLRAVAADEAPEPVIDAYPDDMAEARGVATRVTADVEAGIRLSDIAVLFRTNSQSA
AIEHALQERGVSVRLRGGKRFFDRPEVTQAVMQLRAASVSIAGEPLFKSVSDVLRSLGWS
AEPPSAPGAVRERWESLDTLARLVDEAPPGCSFRQFTDDLLARQQTHHEPEHAAVTLATL
HSVKGLEWESVHLMGLAEGLVPLSYAVGHEAIDEERRLLYVGITRARQRLRLSWARSTAG
RIIRREPSRFLAEIGMRSRDAVPVSVP
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
gtgacgacccttctcgatggactcgatgaggggcagcgcgaggttgcggaggcgctcctt
gggccggtctgcgttcttgccggtgccggtgccggcaagacccgtaccatcacccaccgc
attgcgcacggtgtcgcgatgggggtgtacacaccggcgcgagtcatggcgctgactttc
acgagccgtgctgcggccgaattgcgttcacgactgcgtgtgctcggggcgggaggcgtc
caggcgcgcactttccacgccgcggcgctctcgcagctcagttacttttggccgcagctc
gtcggcggaaccgtgccgcgcctggttgagggtaaggcgagagtgcttgcgcacgcggcg
gaacgcctccgtctcactgtcgataccgcgacattgcgtgatctctcggccgaaatcgag
tggcgcaaagtgtcggcgctctcgttggaagactatgcgtcggcagcgcgcacccgcgtc
ctgcctgggcagctcacgctcgaacagactgtggcccttctcgaagaatatgaaggtctg
aaagaccagcgccgccagatcgactttgaagatgttctcttggctaccgcgggaatgctc
gagtcggagcccgccatggctatgcaggtgcgcgagcaatatcgcttcttcgtcgtggac
gagtaccaggatgtcagtccgttgcagcagcgattgctcgaattgtggctcggcgaccgg
agtgacctttgtgtggtgggtgacgcgagtcagaccatctactccttcgctggcgcgcgc
gccgagtacctgctcaatttcgcctcccgctggccaggagcgaccatggtgcgactcgag
gacaactaccgttcgacgacgccgatcgtgcagatggccaatcgtttgatgcgagggcgt
cccggagcacttgtgcttcgtgcggttgctgcggacgaagcgcctgaaccggttattgat
gcctatcccgacgatatggcggaggcgcggggtgtggccacgcgagttactgccgacgta
gaggcgggaatacgcctctccgatattgctgtgctattccgcaccaacagccagtcggcg
gcaattgaacacgctctgcaggagcgcggcgtgagtgtgcgcctgcggggcgggaagcgt
ttctttgatcgacccgaagtcacacaggcagtcatgcagctgcgggcggcctcggtctcg
atcgcgggagagccactgttcaagtcagtcagcgatgtcttgcgttcgctgggttggagc
gcagagccgccgtcggcaccgggggcggtacgtgagcgatgggagtcgctggatactctc
gcccgcctggttgacgaggcgccccccgggtgctcatttcgtcagttcaccgacgatttg
cttgctcggcagcagacgcaccacgagccggaacatgcagctgtgaccctggcgaccctg
cactcagtcaaaggcctggagtgggagtcggtgcacctgatgggattggctgagggattg
gtccctctctcctatgcagtgggtcatgaagcgattgacgaggagcgcaggctcctctat
gtgggaattactcgcgctaggcagcgactgcgtttgtcgtgggcgcgttccaccgcgggc
cgcatcatacggcgggagccgtcgcgtttcctcgcagagatcggcatgcgcagccgggat
gcggttcccgtgtccgttccgtga
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