Rathayibacter toxicus WAC3373: APU90_02830
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Entry
APU90_02830 CDS
T04269
Name
(GenBank) transferase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
rtc
Rathayibacter toxicus WAC3373
Brite
KEGG Orthology (KO) [BR:
rtc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rtc03016
]
APU90_02830
Enzymes [BR:
rtc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
APU90_02830
Transfer RNA biogenesis [BR:
rtc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
APU90_02830
Prokaryotic type
tRNA splicing ligases
APU90_02830
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GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
ALS56833
UniProt:
A0A0C5B8X2
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All DBs
Position
complement(625168..626337)
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AA seq
389 aa
AA seq
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MQRITPRLVSWASILDENARQQAVTASEMPFVFPHLALMPDAHLGRGATVGSVIPTLGAI
IPAAVGVDIGCGMIAVRTDLMRDDLAGHNLAELRQQIERAVPLSVGAANREVVATAQPRI
AELEALAEQAGFDPAAYASKWRLQLGSLGSGNHFIEVSVDETNAVWLFLHSGSRGVGNRI
AAAHIEVASDYCARHWITLPDPDLAYLVEETKEFDRYIAELRWAQRFALLNREEMMDRVI
HELREWRGAPVEELERINCHHNFTEKEQHWGKEVWVSRKGAIQADLGRPGLIPGSMGTAS
YVVVGRGDPVSLNSSPHGAGREYSRSQARRTFTHEQLREAMAGIEYRDTDAFIDEIPAAY
KPIDRVMADAAELVEIRHTLHQLVNVKGD
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atgcagagaatcaccccgcgcctagtatcctgggcgagcattctcgacgagaacgcgcgg
cagcaggcggtgaccgcatccgagatgccgttcgttttcccgcatctggcgctgatgccc
gacgctcaccttgggcgcggcgcgaccgttggctccgttatccccacgctaggcgcgatc
atcccggcggcggtcggagtcgacatcggctgcggcatgatcgccgtgcgcaccgatctc
atgcgcgacgaccttgccgggcacaaccttgccgagctgcggcagcagatcgagcgggcg
gtgccactgtcggtcggcgcggccaaccgcgaggtcgtcgcgactgctcagccgcgcatc
gccgagctggaggcgctcgccgagcaggcgggtttcgatccggccgcgtacgcctcgaag
tggcgcctccagctgggctcgctcggcagcggcaatcacttcatcgaggtgagcgtcgat
gagaccaatgcggtctggctgtttttgcactcgggttcgcggggagtgggtaaccgtatt
gctgctgcccacatcgaggtcgcgagcgactattgcgcacgccactggatcactttgcct
gatcctgatcttgcttatctcgttgaagagacgaaagaattcgaccggtacatcgctgag
cttcgctgggcgcagcgctttgccctgcttaaccgcgaagaaatgatggatcgcgttatc
catgagttgcgggagtggcgtggtgcgccggtcgaggaactggagaggatcaactgccac
cacaacttcaccgagaaagagcagcactggggcaaagaggtctgggtgagccgtaaaggc
gcgatccaggcagacctcggtcggccggggctcattcccggctcgatgggtaccgcctca
tacgtggtggtggggcgtggcgacccagtctcgttgaattcatcgcctcatggcgccggg
cgcgagtactcgcggtcgcaggcacgtcgtaccttcacacatgagcagttgcgggaggct
atggcaggcatcgagtaccgcgacaccgatgccttcattgatgaaattccggcggcctac
aaaccgatcgaccgggtgatggccgacgcggccgaactcgtggagatacggcacaccctc
caccaactggttaatgtcaagggcgattga
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