Rathayibacter toxicus WAC3373: APU90_03840
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Entry
APU90_03840 CDS
T04269
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rtc
Rathayibacter toxicus WAC3373
Pathway
rtc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rtc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
APU90_03840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtc03021
]
APU90_03840
03400 DNA repair and recombination proteins [BR:
rtc03400
]
APU90_03840
Enzymes [BR:
rtc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
APU90_03840
Transcription machinery [BR:
rtc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
APU90_03840
DNA repair and recombination proteins [BR:
rtc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
APU90_03840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
SCNM1_acidic
ADIP
Motif
Other DBs
NCBI-ProteinID:
ALS57005
UniProt:
A0A0C5BD65
LinkDB
All DBs
Position
complement(823292..827191)
Genome browser
AA seq
1299 aa
AA seq
DB search
MLDVTTFDELRIGLATADDIRRWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
SCGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMIIDVDEDGRHADMPGLENELRLEIKTLSDQRDSRIADRLAQLETD
LAALEAEGAKSDQKRRTKDGAEKEMSQIRKSFDEDISRLESVWEQFRTLKIGDLKPEDAV
FNELVDRYGVYFEAYMGAESIKKRLEQFDLQAEADTLHLQIAEGKGQKKIRAIKRLRVVN
SFLATGNSPAAMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLSHAQNIKAAKRMVERSR
PQVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARILMLASNNILKPSDGRPVTLPTQDMIIGLHHLTTIREGAAGEGR
AFSSVAEAILAKDQGTLHLNAKVRIRMSDVFFAQGQAPEGVELDEKGKVTAPILLETSLG
RALFNEALPADYPYFEQVADKTTISGIVNDLAERYPKVEVAASLDRIKDAGFYWATRSGV
TVSLSDILTPPSKPEIIAGYEKKAAKVESEYDKGLTTQAERRQELVKIWTEATDEVAKAM
RANFPDDNTINRMVTSGARGNWLQVRNIAGMRGLVNNPKGEIIARPIISSYREGLSVAEY
FIATHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREDDCGTSKGLDLPIMLEDASGA
WIKDSNVENSVYARSLATAATNEAGEVIAEAGEDVGDVLIEKLVGADVRHIKVRSVLTCE
SAVGVCAACYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGSASADDITQG
LPRVQELFEARTPKGASPIAEAAGRITIEDTDRARRVILQPDNGDEAVIYPVLKRSQLLV
EDGQHVGLGQQLHVGTVDPKEVLRVLGVREVQKHLVGGVQGVYRSQGVPIHDKHIEVIVR
QMLRKVTVVDHGDTELLPGELVDRSRYSEVNRAALTEGKRTASARQEVMGITKASLATES
WLSAASFQETTRVLTQAAMEGKRDPLVGLKENVIIGKLIPAGTGLAKYRNVTVEATEEAK
AERYPNRIFADAAAFSDADLSFVDFDSFSSDGYEQGSYS
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgtaacaacttttgacgagctgcgcatcggcctcgcgacggctgatgacatc
cgtcgctggtcgcacggtgaagtgaagaagcccgagaccatcaattaccgcacccttaag
cccgagaaggacggtctgttcggtgagcagatctttggcccttcacgggactgggagtgc
tcctgtggcaagtacaagcgtgtccgcttcaagggcattgtctgtgagcgctgcggtgtc
gaggtcaccaagtcctcggtccgtcgtgagcgaatgggtcacattgaactcgccgcaccc
gtcacccacatctggtacttcaaaggtgtgccctcgcgtctcgggtacctgcttgacatg
gccccgaaggacctcgaaaaggtcatttatttcgcggcgtacatgatcattgatgtcgat
gaggacggtcggcacgcggacatgcccggcctcgagaacgagctgaggctcgagatcaag
actctctccgaccagcgtgactcccgtattgccgaccgcctggcacaactcgaaaccgac
ctcgccgccctggaggcggagggcgcgaagagcgaccagaagcgccgcactaaagacggc
gccgagaaagagatgagccagatccgcaagtccttcgacgaggacatctcgcggctcgag
agtgtgtgggagcagttccgcactcttaagattggtgacctcaagcccgaggacgcggtc
ttcaatgaactcgttgaccggtacggcgtttacttcgaggcatacatgggtgccgagtcg
atcaagaagcgcctcgagcagtttgacctccaggccgaggctgacactctgcacttgcag
atcgctgaaggcaagggtcagaagaagatccgcgcgattaaacgcctgcgcgtggtcaac
tcgttcctcgccaccggcaattctccggccgcgatggttctcgatgttgtcccggttatc
ccgccggagttgcgcccgatggtgcagcttgacggtggccggttcgccaccagtgatctg
aatgatctctaccgccgtgtgatcaaccgcaacaaccgcctccgccgtctgcttgatctc
ggtgcccccgagatcatcgtgaacaacgagaagcggatgctccaggaggcggtggacgcg
ctcttcgacaacggacgccgcggccgtcccgtcaccgggaccggcaaccgcgccctcaag
tccctgagcgacatgctcaagggaaagcagggtcgcttccggcagaacctgctcggcaag
cgtgtcgactactcgggccgctccgtgatcatcgtcggtccgcagcttaagctgcaccag
tgcggtctgcccaagcagatggctttggagctgttcaaacccttcgtgatcaagcgcctg
atcgacctgtcgcacgcgcagaacatcaaggccgccaagcggatggtggagcgttcgcgc
ccgcaggtgtgggacgtgctcgaggagatcatccgcgagcgccccgtgctgctcaaccgt
gcgccgaccctgcaccgtctgggcatccaggccttcgaacctcagcttgtcgagggtaaa
gcgatccagttgcacccgctcgtctgcgcagcgttcaacgccgactttgatggcgaccag
atggccgtccacctgcccctgtcggtggaggcgcaggccgaggcgcgcatcctgatgttg
gcctccaacaacattcttaagccctcggatggccgccccgtcaccttgcccacgcaggac
atgatcattggcctgcaccacctgacaaccattcgcgagggtgccgcaggcgaggggcgg
gcgttctcctcggttgcggaggcgatcctcgccaaggaccagggcacgctgcacttgaat
gcgaaggtcaggatccgcatgtcggatgtcttcttcgcgcagggtcaggctcccgagggc
gtcgaactcgacgagaagggcaaggtcaccgcgccgatcctgctcgagaccagcctgggc
cgcgcgctcttcaacgaggcgctgccggcggactacccctacttcgagcaggttgccgac
aagacgaccatttcgggaattgtcaacgatctcgccgagcgctacccgaaggtggaggtc
gccgcttcgctggaccggatcaaggatgccgggttctactgggccacccgctcgggtgtc
accgtgtcgctgtcggacatcctcacgcctccgtcgaagcccgaaattatcgcgggatat
gagaagaaggccgccaaggtggagtccgagtacgacaagggcctcacgacgcaggcggag
cgtcgtcaggagctcgtgaagatttggaccgaggcgaccgatgaggtcgcgaaggcaatg
cgcgcgaacttcccggacgacaacaccatcaaccgcatggtcacctccggcgctcgcggt
aactggctgcaggtgcgcaacattgccggtatgcgtgggctggtgaacaatccgaagggt
gagattatcgctcgaccgattatctcctcctaccgcgagggcttgtcggttgcggagtac
ttcatcgccacgcacggtgctcgcaagggtctggccgacacggcgctgcgtactgcggac
tcgggctacctgacgcgacgcctcgtcgacgtgtcgcaagacgtgatcattcgcgaggac
gactgcggcacctcgaagggtcttgacctgccgatcatgctggaggacgcctccggagcc
tggatcaaggactcgaacgtcgagaactccgtctacgctcgctctctcgccaccgcggcg
acgaacgaggctggcgaggtgatcgccgaggcgggcgaggacgtgggcgatgtgctcatc
gagaagttggtcggagccgacgtgcgtcacatcaaggtgcgctcggtcttgacctgcgag
tccgccgtcggcgtttgcgcggcctgctacggccgttcgctcgccaccggcaagctcgtc
gacatcggtgaggccgtcggtatcatcgcggcccagtcgatcggtgagcctggaacgcag
ctcaccatgcgtaccttccacaccggaggttcggcctcggccgacgacatcacgcagggt
cttccccgtgtgcaggagctcttcgaggcccgcactcccaagggagcctcgccgatcgcg
gaggccgcaggtcggatcacgatcgaggacaccgaccgtgcccgccgcgtgatcctccag
ccggacaacggcgacgaggcggtcatctacccggtgctcaagcgttcgcagctgctcgtc
gaggacggccagcatgtggggctcgggcagcagttgcacgtcggcaccgttgaccccaag
gaggtactgcgtgtgctgggtgtccgcgaggtccagaagcacctggtcggaggcgtccag
ggcgtctaccgctcgcagggggtgccgatccacgacaagcacattgaggtcatcgtgcgc
cagatgctccgcaaggtcaccgtggtcgatcacggtgacacggagctgctgccgggcgag
ctcgttgaccgctcgcgttacagcgaggtcaaccgcgcggctctgaccgagggcaagcgc
accgcctccgcccgccaggaggtcatgggtattaccaaggcctccctcgcgaccgagtcg
tggctgtcggccgcgtccttccaggagaccacccgcgtcctgacgcaggctgctatggag
ggcaagcgtgacccgctggtcggcctcaaggaaaacgtgatcatcggaaagctgatcccg
gccggaactggtttggcgaaataccggaatgtaacggtggaggcgaccgaggaggcgaag
gccgagcggtaccccaaccgcatcttcgccgacgctgccgccttcagcgacgctgacctg
tccttcgtcgatttcgactcgttctcgagcgacggctacgagcagggcagttacagctag
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