Rathayibacter toxicus WAC3373: APU90_04950
Help
Entry
APU90_04950 CDS
T04269
Name
(GenBank) cold-shock protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rtc
Rathayibacter toxicus WAC3373
Pathway
rtc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rtc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APU90_04950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtc03019
]
APU90_04950
03009 Ribosome biogenesis [BR:
rtc03009
]
APU90_04950
Enzymes [BR:
rtc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
APU90_04950
Messenger RNA biogenesis [BR:
rtc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
APU90_04950
Ribosome biogenesis [BR:
rtc03009
]
Prokaryotic type
rRNA helicases
APU90_04950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
adh_short
Cas3-like_C_2
UvrA_inter
DUF2057
Motif
Other DBs
NCBI-ProteinID:
ALS57195
UniProt:
A0A0C5BFQ6
LinkDB
All DBs
Position
complement(1060514..1062298)
Genome browser
AA seq
594 aa
AA seq
DB search
MASTDTPVPAAETNTASDTAPPITFSDLGLGEPVLKALKDVGYETPSAIQAATIPSLLSG
RDVLGVAQTGTGKTAAFALPILSRLDVSQKTPQALVLAPTRELALQVCEAFERYASYLRG
VSVLPVYGGQGYGTQLSALRRGVHVVVGTPGRIIDHLEKGTLDLSELHYLVLDEADEMLK
MGFAEDVETILAETPASKQIALFSATMPPQIRRISQRYLKDPEEITVTSKTTTSVNISQR
YLMVSHPQKVDALTRILEVENFEGMIVFVRTKSETETLAEKLRARGYTAAAISGDIAQAQ
RERTVEQLKAGKLDILVATDVAARGLDVDRISHVVNYDIPTDTESYVHRVGRTGRAGRSG
AAISFVTPRERRLLTAIEKATRQPLTEMRMPSFEDVNVTRLSRFDDAITTALQDREKLER
FREIIGHYVEHHDVVESDVAAALAIVAQGGEPLLLEADDPRFARPEREARPERGDRPSRG
DRPERGARPERRQRSSDAALAAYRIDVGRRQRVEPRQIVGALANEGGLQRSDFGRIDIRP
DFSIVELPADLPRDVLDRLADTRISGQLINLTPDRRRPRDSNRSSDRPPRKPRS
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctactgatacacccgttcccgcagccgagactaacaccgcgtccgatacggct
ccgccgatcactttctccgatttagggctcggcgagcccgttctcaaggcactcaaggac
gtcggttacgagactccgtctgccattcaggccgcaacaatcccttccctgctctctggc
cgcgatgtgctcggcgttgctcagacaggtaccggtaagacggcggcattcgcgctgccg
atcctctcgcgcctcgacgtctcgcagaagacgccgcaggctctggttcttgcgccgact
cgtgagctggcattgcaggtgtgtgaggccttcgagcgttatgcgtcatacctgcgtggc
gtcagcgtgctgcccgtgtacggcgggcaggggtacggtacccagctgtcggcactgcgt
cgtggtgttcacgtggttgtgggcacgcctggccgtatcatcgaccatctcgaaaagggc
acccttgacctttcagagcttcactacctcgtgctcgatgaggcagacgaaatgctcaaa
atgggcttcgcggaggatgtcgagacaatcctcgccgagacgcctgcctcgaagcagatt
gcgctcttttccgcgacaatgccgccgcaaattcgccgcatttcgcagagatatctgaaa
gatcccgaagagatcacggtcacgagtaagaccacgacctccgtcaatatcagccagcgt
tatctgatggtgtcccacccgcagaaggtggacgcgctaacccgtattctcgaggtggag
aatttcgaaggcatgattgtctttgtccgcactaagagtgagacggagactctggctgag
aaattgcgagcccgtggctacaccgccgcggcgatcagtggagacatcgcccaggcccag
cgcgaacgcacggtcgaacaactcaaagcgggtaaactcgacatccttgtcgcaaccgat
gtcgcggcgcgtggactggatgtagaccgcattagccatgtcgtcaattacgacattcct
accgataccgagtcatatgtgcatcgtgtcggccgtaccggtcgggcggggcgcagcgga
gcggcgatcagctttgtcaccccacgtgagcgtcgcctcctcaccgcgattgaaaaggcg
actcggcagccgttgaccgagatgcgaatgccgagttttgaagacgttaacgtcactcga
ctttcgcgcttcgatgacgccatcacaaccgctctgcaggatcgtgagaagttagagaga
ttccgcgagattatcggtcattatgtcgagcatcatgatgtggtggagtcggatgtagcg
gccgcactggcgattgtcgcgcagggcggggaaccgcttctcctggaagctgacgatccg
cgctttgcgcgccccgagcgggaggcgcggcccgagcgcggggatcgccccagccgcggt
gaccggcctgagcgtggggctcgccctgagcgccgtcagcgctcgtcggacgcggcgctc
gctgcctaccggattgatgtcggtcgccgccagcgcgtagaaccgcggcagattgtcggg
gcacttgcgaacgagggcggtcttcagcgcagcgatttcggccgtatcgatattcgcccg
gatttctcgatcgtcgaattgcccgcggatttgccacgggacgtcctcgatcggctggct
gacacccgtatcagcggtcagctgatcaacctcacccccgaccgccgtcggccccgtgac
tcgaatcgctcctccgaccgcccgccccgcaagccgcgctcctga
DBGET
integrated database retrieval system
