Rissa tridactyla (black-legged kittiwake): 128900896
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Entry
128900896 CDS
T09443
Symbol
SMG5
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5 isoform X1
KO
K11125
protein SMG5
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128900896 (SMG5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtd03019
]
128900896 (SMG5)
03032 DNA replication proteins [BR:
rtd03032
]
128900896 (SMG5)
Messenger RNA biogenesis [BR:
rtd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
128900896 (SMG5)
mRNA cycle factors
Common to processing body (P body) and stress granule
128900896 (SMG5)
DNA replication proteins [BR:
rtd03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
128900896 (SMG5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
128900896
NCBI-ProteinID:
XP_054038519
LinkDB
All DBs
Position
23:complement(3535551..3565276)
Genome browser
AA seq
1049 aa
AA seq
DB search
MSQGGGATGESGEPEAKVLHTKRLYRAVVEAVHRLDLILGNKAAYQEVFKPENISLRNKL
RELCVKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKKHIHSRSTLECAYRTHLVAGI
GFYQHLLLYIQSHYQLELQCCIDWTHVTDPLIGCKKPVSASEKEMEWAQMACHRCLVYLG
DLARYQNELAGVDTELLAERFYYQALSVAPQIGMPFNQLGTLAGSKYYNVEATYCYLRCI
QSEVSFEGAYGNLKRLYDKAAKMYHQLKKCETRKLSPSKKRGKDIKRLLVSFMYLQSLLQ
PKSSSLDSELTSLCQSVLEDFNLCLFYLPSPPNLSSTSEDEEEYESGYSFLPDLLIFRMV
IICLMSVHSLKRAGSKQYSAAIAFTLALFSHLINHVNIRLQAELEEGENPVPAFQSDGTD
DQEPREPLNSIEKEADADLANHQPSEEQRKNDCKKSKKYSRLSCLRRRRHPQKVDESDLS
EGFDSDSSQGSIKGSDGSESGSEKSDEEAEAAFDVETDSDMNSQESRSDLEDMEDEPGEE
GGGRGKSGPKEALKNCVDGSGLGDSNSPSISKIEAPDPGVNGPTSVSTNDASIASNLQAM
STQLFQTKRCFRLAPTFSNILLKPNSDPPVLKDGLESKPCVNGDLEKPSLAEQDDVSDSE
ESISSNKSCRNERSLQEKLEIVTNEGLLLTVKVFLDWLRTNTDLIIMCAQSSQSLWNRLS
VLLNLLPSAADLQESGLALCNEVKDILSGAELPDLKANLLLPEDVALRNLPPLKNAHKKF
NFEQDRPIFSAVEESIVRICCIRSFGHFITHLQGSILQFNSELGIFISIAQSEQDNLLHQ
AQAQFHMAAEEARRNRLMRDMAQLRLQLEVSQLEGSLQQPKAQSAMSPYLVPDTQALCQH
LAVVKQLATSGRFIIIIPRTVIDGLDFLKKENAGARDSIRYLEAEFKKGNRYIRCQKDVG
KSFERHKLKRQDLDAWNLYKILDSCKQLTVSQGSGEDDTTGMVTIITGFQLEDPSTFSAP
MQSAIQAAANASVEIKNVLEFYKQWKEMG
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atgagccaaggcggcggggctaccggcgagagcggcgagccggaggccaaggtgctgcac
accaagcggctgtaccgagcagtggtagaggccgttcatcgtttggatctcatccttggc
aataaggcagcgtatcaagaagtgttcaagccggagaacatcagcttgaggaacaagctg
cgggagctgtgtgtgaagctgatgttcttgcatccagtggattacggaagaaaagcagaa
gaactgctctggagaaaagtttactatgaagttatccagctcattaaaacaaataaaaag
cacattcacagccgtagcactctggagtgcgcgtaccggactcacttagttgctggcata
ggattttaccagcaccttctcctctacatccagtctcactatcagctggagctgcagtgc
tgtattgactggacgcacgtaacagaccctctcataggctgcaagaaacctgtgtctgca
tcggagaaggagatggagtgggcacagatggcatgtcacagatgtctggtttatctggga
gatctagctcgctatcagaatgaactggcaggtgtggacacagagctgctggctgagcgg
ttttactatcaagccctttctgttgcaccacaaattggcatgccctttaaccagctgggg
acgctggcagggagcaagtactacaacgtggaagctacctactgctacttacgctgtatc
cagtctgaagtgtcctttgaaggtgcctatgggaacctgaagcggctgtacgacaaagca
gccaaaatgtatcaccagctgaagaaatgtgaaaccaggaagttgtctccaagcaagaaa
cgaggcaaagacattaagaggttgctggtgagctttatgtacctgcagagtcttttgcag
ccaaagagcagttctctggattctgagctgacatctctctgccagtctgtgctggaggat
ttcaacctgtgcttgttctacctgccctctcctcctaatctgagctcaactagtgaagat
gaagaagagtatgagagtggctactccttccttcccgatctcctgatctttcgcatggtg
atcatctgccttatgagtgttcacagcctcaagagggcaggttcaaagcagtacagcgca
gccatcgctttcacgctggccctcttctctcacctgataaatcacgtcaatattcgcctc
caagcagagctggaagaaggggaaaacccagtcccagcctttcagagcgatggcacagat
gaccaggagccgcgggagccattgaactcgatcgagaaggaagccgacgctgacttggcc
aatcatcagcccagcgaggaacagcgtaagaatgactgcaagaaaagcaagaaatactcc
cgcctctcctgtttgcgccgccgccgccacccccagaaggtggatgagagcgacctgagc
gagggctttgactctgactccagccagggctccataaagggcagcgatggctcagaaagt
ggctcagagaagagtgacgaggaagcagaagctgcttttgatgtggagacggactctgac
atgaacagccaagaatctcggtccgacttagaggacatggaggatgagccgggtgaggag
ggaggcggccgaggcaaaagtgggcccaaagaggccttaaaaaactgtgtggatggcagt
gggcttggggactccaacagcccaagcatctctaaaattgaggctccggatcccggagtc
aatgggccgacttccgtgagcactaatgacgcgagcatagccagtaatctccaggccatg
tccacccagctgtttcagaccaaacgctgctttcgcttggctcccactttcagcaacatc
cttctgaaaccgaacagtgacccgcctgtcttgaaggatggactagaaagcaagccatgt
gtcaatggggatctggagaagcccagcttggcagagcaagatgacgtgtctgactctgag
gaaagcatttcaagtaacaaatcctgcaggaatgagcgatcccttcaggagaagctagag
atcgtgaccaatgaagggctgcttctcactgtcaaggtgtttctggactggctgaggaca
aacacggacctcatcatcatgtgtgctcagagctctcagagcctgtggaacaggctgtct
gtgctcctgaaccttctgccttctgctgcagacctgcaggaatcagggctggccctgtgt
aatgaagtcaaggacattctgagtggtgctgagctcccagacctgaaagccaacttgctg
ctcccagaagacgtggccctgcgaaatcttccccctctgaaaaatgcacacaagaagttt
aactttgagcaagaccggcccattttctcagcagttgaggagtctattgttcggatttgc
tgcattcggagcttcggccacttcattacccacttgcaaggcagcatcctgcagttcaac
tcggagcttgggatcttcatcagcatagcacagtcggagcaagacaacttgctgcaccag
gcgcaagcccagtttcacatggctgcagaggaagcgcgtcggaacaggctgatgagagat
atggctcagcttcgactgcagctggaggtttctcagctggagggaagtctccagcagccc
aaagcgcagtcagccatgtctccttatcttgtcccggacacccaggccctctgccagcac
ctggctgtcgtcaagcagctagccaccagcgggaggttcataatcatcatccctcgaaca
gtgatcgatggcttagacttcctgaaaaaggagaacgcaggtgctcgggacagcatccgc
tatctggaggcagaatttaaaaagggaaacaggtacatccgttgccagaaagatgttggg
aagagctttgagaggcataaattgaagagacaagatttagatgcctggaatctctataaa
atactggacagctgcaaacaactgacagtgtcccagggaagcggagaagacgacaccaca
ggaatggtcaccatcatcacgggctttcagctggaggacccaagcacgttctcggcgccc
atgcagtctgccatccaggcagccgccaatgccagcgtagaaataaaaaatgttctggag
ttctacaagcagtggaaagagatgggctga
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integrated database retrieval system
