Rissa tridactyla (black-legged kittiwake): 128900995
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Entry
128900995 CDS
T09443
Symbol
COPA
Name
(RefSeq) coatomer subunit alpha
KO
K05236
coatomer subunit alpha
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rtd04131
]
128900995 (COPA)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rtd04147
]
128900995 (COPA)
Membrane trafficking [BR:
rtd04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
128900995 (COPA)
Exosome [BR:
rtd04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
128900995 (COPA)
Exosomal proteins of bladder cancer cells
128900995 (COPA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_Prp19
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_2nd
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WDR55
Beta-prop_EML_2
TPR_COPA_B
Beta-prop_WDR36-Utp21_1st
WD40_Gbeta
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_WDR75_1st
WD40_RFWD3
WD40_MABP1-WDR62_1st
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_WDR41
Beta-prop_SCAP
Beta-prop_Aladin
Beta-prop_SPT8
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
128900995
NCBI-ProteinID:
XP_054038681
LinkDB
All DBs
Position
23:complement(1861750..1883307)
Genome browser
AA seq
1224 aa
AA seq
DB search
MLTKFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVW
NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVESD
VRGITGVDLFGTTDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAW
EVDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAAH
PNLNLFAAGHDGGMIVFKLERERPAYAVHGNMLYYVKDRFLRQLDFNSSKDVAVMQLRSG
SKFPVFNMSYNPAENAVLLCTRASNLENSTYDLYTIPKDADSQNPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSILIKNLKNEITKKVQVPNCDEIFYAGTGNLLLRDADSITLFDVQQK
RTLASVKISKVKYVIWSADMSHVALLAKHAIMICNRKLESLCNIHENIRVKSGAWDESGV
FIYTTSNHIKYAVTTGDHGIIRTLDLPIYVTRVKGNNVYCLDRECRPRVLTIDPTEFKFK
LALINRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEI
ALEAAKALDDKNCWEKLGEVALLQGNHQIVEMCYQRTKNFDRLSFLYLITGNLEKLRKMM
KIAEIRKDMSGHYQNALYLGDVAERVRILKNCGQKSLAYLTAATHGLDEEAESLKETFDP
EKETIPDIDHNAKLLQPPAPVMPLDTNWPLLTVSKGFFEGTIANKGKGGALAADIDIDTV
GTEGWGEDAELQLDEDGFVDAGEGFGEEGLGKGQEEGGGWEVEEDLDLPPELDVPAGPAG
AAEDGFFVPPTKGTSPAQVWCNNSQLPVDHVLAGSFETAMRLLHDQVGVTNFGPYKQLFL
QTYARGRTTYQALPCLPTMYGYPHRNWKEAGLKNALPAVGLKLNDLIQRLQLCYQLTTAG
KFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLIAICREYIVGLSMEIERKKLPKETLEQ
QKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFKTAATFARRLLELGPKPEVAQQ
TRKILSACEKNPTDTYQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYCPEFHGQI
CRVTTVTEIGKDVIGLRISPLQFR
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgctgaccaagtttgagactaaatcggcccgggtgaaagggctcagctttcaccccaag
cggccgtggatccttaccagcctgcacaatggtgtcatacagctgtgggattatcggatg
tgcaccctcatcgacaaattcgatgagcacgacggacccgttcgagggattgatttccac
aaacagcagcctctgtttgtctctggaggagatgattacaaaataaaggtctggaattac
aaattgcgccgttgtctcttcactctgctcgggcacttggattatattcgcaccaccttc
ttccaccacgaatatccctggatcttgagtgcttctgatgatcagaccattcgggtttgg
aactggcagtccagaacttgtgtttgtgtgctgacaggacacaaccactatgtgatgtgt
gcccaatttcacccctctgaggacctggtagtgtcagccagcttggatcagactgtgcgc
gtttgggatatttctggcctaaggaagaagaacctgtcccctggagctgtggaatcggat
gtacggggaataacgggggtggatttgtttgggacaacagatgcggttgtgaagcacgtt
ctcgagggccacgatcgtggggtgaactgggctgccttccaccccacaatgccacttatt
gtgtcgggagctgacgatcggcaagtgaagatctggcggatgaacgaatcgaaggcctgg
gaagttgacacttgccgggggcattacaacaacgtctcctgcgctgtctttcacccgcgg
caggaactcatcctcagcaattcggaagacaagagcatccgtgtctgggatatgtctaaa
cgcacgggtgtccagacctttcggcgtgatcatgatcgcttttgggtattggctgctcat
cccaacctcaacctctttgctgcaggccatgacggtggcatgattgtgttcaaactggag
cgggagcggcctgcttatgctgtgcacggcaacatgctctattacgtgaaggaccgtttc
ctccgccagctcgatttcaacagctcaaaagacgtggctgtcatgcagctgcgaagtggt
tccaagttccccgtgttcaacatgtcatacaacccggctgagaacgccgtccttctctgc
acgagagccagcaacttggagaacagcacttatgacctctacaccattcccaaggatgca
gactcccagaatccggatgcccctgaggggaagcgttcctccgggctcacagctgtgtgg
gttgctcgtaaccgcttcgcagtcctggatcgcatgcattcgatcctaatcaaaaacctg
aagaatgagatcacgaagaaggtgcaggtgccgaactgtgatgagattttctatgctggc
accgggaacctgttactgagggatgcagactccatcaccctctttgacgtgcagcagaag
cggactctggcctcggtgaagatctccaaggtgaaatatgtcatctggtcggccgacatg
tcccatgtagctctgctggctaagcatgccatcatgatctgcaacagaaagctggagtcg
ctgtgtaatatccatgaaaacatccgtgtcaagagcggcgcctgggatgaaagtggtgtt
ttcatctataccaccagcaatcacatcaaatacgctgtcaccacgggggatcatggaatt
atccgcaccctggacctgcctatctacgttacccgtgtgaaggggaacaatgtgtactgc
ctggacagagagtgccgccccagggtcctcactattgatcccacagaattcaaattcaag
ctggcgttgatcaacagaaagtacgatgaggtgttgcacatggtgaggaacgctaagctc
gtgggccagtccatcattgcctacctgcagaaaaagggctacccggaggtggccctccac
tttgtcaaggatgagaagacccgtttcagcctggcgctggaatgcggcaacattgagatt
gctctggaagcagccaaagctctggatgacaagaactgctgggagaaactgggagaagtg
gcgttgctgcagggaaatcaccagattgtggagatgtgctaccagcgcaccaagaacttt
gataggctctccttcctctatctcatcactggcaatctggagaagcttcggaagatgatg
aagatagctgagatccgtaaagatatgagcggccactaccagaatgccttgtatctagga
gacgtggcagagagagtgaggatcctgaagaactgtgggcaaaagtccctggcctatctc
acagctgcaactcatggtctggatgaggaagctgaaagcctgaaggaaacctttgatcct
gaaaaggaaacgattccagacattgatcacaacgcaaagctgctgcagcctcctgctcct
gtcatgcctctggataccaactggccattgctgactgtctccaaggggttctttgaagga
acaattgccaacaaaggcaaagggggtgccttggctgctgatattgatatcgacactgtc
ggcaccgaaggctggggagaagatgcagagttgcagctggatgaagatggctttgtggat
gctggagaaggctttggagaggaaggtctgggtaaaggacaggaagaaggaggtggatgg
gaagtcgaagaagatttggatcttccccctgaactggatgttcctgctggtccagcggga
gcagcagaggatggattctttgtgccacccaccaagggcaccagcccagctcaggtgtgg
tgtaacaattctcagctccctgttgaccacgttctggccggctcctttgagacagcaatg
agactcctccatgaccaggtaggagtaacaaattttggaccctacaagcagctgttcctg
cagacctatgcccgtggccgtacgacctaccaagccctgccgtgtctccctaccatgtat
ggatacccacatcgcaactggaaagaagctggcttgaagaatgccctccctgccgttggc
ctgaaactcaatgacctgatccagcgcctgcagctgtgctaccagctcaccacagctggc
aaatttgaggaggccgtggagaagttccgctccatcttgctcagcgtgcctttgctggtg
gtggacaacaagcaggagattgctgaggcccagcagctgatagccatttgccgggagtat
attgtaggactctcgatggagattgagcggaagaagctgcccaaggagaccctggagcag
cagaagcgaatctgcgagatggctgcctatttcacccactccaacctgcagcccgtccac
atgatcttggtgctgcgtactgctctcaacctctttttcaagctcaaaaacttcaagacg
gctgctacttttgcccgtcggctgctggagctgggtccaaagcccgaggtggcccagcag
actcgcaagatcttgtcggcgtgtgagaagaatcccactgacacctaccagctcaactat
gacatgcacaacccctttgacatctgtgccgcttcttaccgacccatttatcgtggcaaa
cccgtggagaagtgtccgctcagcggcgcctgctactgcccggagttccacgggcagatc
tgccgcgtcactacggtgacggagatcggcaaagatgtcatcgggctgcggatcagcccg
ctccagttccgctag
DBGET
integrated database retrieval system
