Rissa tridactyla (black-legged kittiwake): 128901212
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Entry
128901212 CDS
T09443
Symbol
COL2A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(II) chain
KO
K19719
collagen type II alpha
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd04510
Focal adhesion
rtd04512
ECM-receptor interaction
rtd04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128901212 (COL2A1)
04518 Integrin signaling
128901212 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128901212 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
rtd00536
]
128901212 (COL2A1)
Glycosaminoglycan binding proteins [BR:
rtd00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128901212 (COL2A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
128901212
NCBI-ProteinID:
XP_054039019
LinkDB
All DBs
Position
24:complement(609999..628649)
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AA seq
1512 aa
AA seq
DB search
MAEPSTECSIKVLCRFRPLNQAEILRGDKFLPVFQGDDSVVVGVTEVPLPPLGAEAGSCL
QEGQRYRDKDVWKPEPCRICVCDTGTVLCDEIICEELRDCPSPEIPFGECCPICPTDQPS
GQPGPKGQKGEPGDIKDVVGPRGPPGPQGPAGEQGQRGDRGEKGEKGAPGPRGRDGEPGT
PGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPSGA
PGPQGFQGNPGEPGEPGAAGPMGPRGPPGPPGKPGDDGETGKPGKSGERGPPGPQGARGF
PGTPGLPGVKGHRGYPGLDGAKGEAGAPGAKGESGSPGENGSPGPMGPRGLPGERGRPGP
SGAAGARGNDGLPGPAGPPTLTLFSPPRGPVGPAGAPGFPGAPGSKGEAGPTGARGPEGA
QGPRGESGTPGSPGPAGAPGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPRTSGCHRP
GEPGIAGFKGEQGPKGETGPAGPQGAPGPAGEEGKRGARGEPGAAGPVGPPGERGAPGNR
GFPGQDGLAGPKGAPGERGPAGLAGPKGATGDPGRPGEPGLPGARGLTGRPGDAGPQGKV
GPTGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKD
GETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGESGKPGDQGVPGEAGAPGLV
GPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGATGPAGPNGAQGPPGLQGMPGER
GAAGIAGPKGDRGDVGEKGPEGAPGKDGARGLIGPIGPPGPAGPNGEKGESGPPGPSGAA
GARGAPGERGEPGAPGPAGFAGPPGADGQPGAKGEQGEPGQKGDAGAPGPQGPSGAPGPQ
GPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGPNGNPGPPGPPGSAGKDGPKGARGDA
GPPGRAGDPGLQGPAGPPGEKGEPGEDGPAGPDGPPGPQGLAGQRGIVGLPGQRGERGFP
GLPGPSGEPGKQGAPGSAGDRGPPGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGAAGVK
GDRGETGPVGAPGAPGAPGAPGPVGPTGKQGDRGETGAQGPMGPSGPAGARGMPGPQGPR
GDKGETGEAGERGLKGHRGFTGLQGLPGPPGPSGDQGAAGPAGPSGPRGPPGPVGPSGKD
GSNGMPGPIGPPGPRGRSGEPGPAGPPGNPGPPGPPGPPGTGIDMSAFAGLGQPEKGPDP
IRYMRADEAAGSLRQHDVEVDATLKSLNNQIESIRSPEGSKKNPARTCRDIKLCHPEWKS
GDYWIDPNQGCTLDAIKVFCNMETGETCVYPNPSSIPKKNWWTSKTKDKKHVWFAETING
GFHFSYGDEDLAPNTANIQMTFLRLLSTEGSQNVTYHCKNSIAYMDEETGNLKKAILIQG
SNDVEIRAEGNSRFTYSVLEDGCTKHTGKWGKTVIEYRSQKTSRLPIVDIAPMDIGGADQ
EFGVDIGPVCFL
NT seq
4539 nt
NT seq
+upstream
nt +downstream
nt
atggccgagcccagcaccgagtgcagcatcaaggtcctgtgccggttccggcccctcaac
caggcggagattctgcggggggacaaattcctgcccgtcttccagggcgacgacagcgtg
gtagtgggggtgaccgaggtccccctgccacccctgggggccgaggcgggcagctgcctg
caggaggggcagcgctatcgcgataaggacgtgtggaagccggagccctgccgcatctgt
gtgtgtgacacggggaccgtcctctgcgacgagatcatctgcgaggagctgcgggactgt
cccagccccgaaatccccttcggagagtgctgccccatatgccccactgaccagcccagc
gggcaacctggccccaagggacagaagggcgaacccggtgacattaaagatgtcgtagga
ccccgagggcctccgggaccacagggtcccgcaggcgagcagggacaacgaggggaccgc
ggcgagaagggggagaagggtgctcccggcccccggggcagggatggagaacccggcacc
cctggaaatcccggccctcccggtccccccggacctcccggcccccccggcctcggtggg
aacttcgcggctcagatggcgggtggcttcgacgagaaggctggaggcgcgcagctgggc
gtcatgcagggacccatgggccccatgggaccccgcggcccccccggaccttcaggtgct
ccgggaccccaaggatttcaaggcaaccccggtgagcccggcgagcccggcgctgctggt
ccgatgggtccccggggaccgccgggacctcctgggaaacccggtgacgatggtgagaca
ggaaaacccggcaaatccggcgagcgcggcccccccggcccacagggtgctcgtggcttc
cccgggacacccggactccccggagtgaaaggccaccggggctaccccggcttggacggc
gccaagggagaggcaggggctcctggagccaagggcgaatcggggtcacctggcgagaac
ggctcccccggccccatgggtccccgcgggctgcccggagagagaggacgtcccggcccc
tccggtgctgcgggtgctcgtggcaacgacggtctccccggcccggctggaccccctacc
ctgacgctcttctcaccccccaggggacccgtcggcccagcaggagcccccggcttcccc
ggcgcccccggctcgaagggtgaagctggtcccaccggagcacgaggtcccgagggtgcc
cagggcccccgcggtgaatccggtacccccggctctcctggccccgctggtgcccccggt
aacccagggactgacggcatccccggcgcaaagggctcggcgggcgccccgggcatcgcc
ggcgctccaggcttccccggcccccgcggccccccccggacctcagggtgccaccggccc
ggagaacccggcatcgcgggcttcaaaggcgagcagggaccgaagggcgagacgggaccc
gcaggaccccaaggtgcccccgggccggctggcgaggaaggcaagagaggagcccgcggt
gaaccgggtgctgccggccccgtgggaccacctggagagaggggtgctcccggcaatcgc
ggcttccccgggcaggacgggctggctggacccaagggtgctccgggcgagcgtggcccc
gctggcctggcgggtcccaagggagccaccggtgaccccgggcgtcccggagagcccggg
ctgcccggagccaggggtctcaccggccgcccaggagatgctggtcctcaaggcaaagtc
ggcccaaccggtgctcccggcgaggacggccgccccggtccccccggcccgcagggtgct
cgcggccagcccggcgtgatgggtttccccggtcccaaaggtgctaatggcgagcccgga
aaagccggtgagaaaggactccccggtgccccgggtctgcggggtctccctggcaaggat
ggcgagacgggagctgccggccccccaggacccgccggtcccgcgggcgagagaggagag
caaggagcccccggtccctccggcttccaggggctgcccgggccaccaggtccccccgga
gagagcggcaaacccggagatcagggtgttcctggagaagccggtgcccccggtctcgtc
ggtcccagaggcgaacgtggcttccccggtgaacgtggctctcccggtgcacaagggctg
caaggtccccgcgggctccccggcacgccgggcactgacggacccaagggtgcaaccgga
ccagccggccccaatggcgcccagggtcccccagggctgcagggaatgcccggcgagaga
ggagcagccggtatcgctggtcccaagggagaccggggagacgtcggagagaagggtccc
gagggagcccccggaaaggacggcgcacgcggtctgataggtcccatcggtccccccggc
cccgctggccccaacggcgagaagggtgaatccggcccccctggtccatccggcgccgct
ggtgcccgtggtgcccccggtgagcgtggtgagcctggtgcccccggtcccgccggattt
gccggccccccgggtgccgacgggcaacccggtgccaaaggcgagcaaggagagcccggg
cagaagggtgacgccggtgctcctggtccccaaggtccctccggagcacctgggccacag
ggtccaactggtgtaactggtcccaaaggagctcggggtgctcagggtccccccggagcc
accggattccccggcgctgccggccgcgtgggaccacccggccctaacggtaacccaggt
ccccccggcccccccggctctgctggcaaagatggtcccaagggtgctcgtggtgatgcc
ggtcccccgggccgtgccggtgaccccggtctccaaggccctgccggtccccctggcgag
aaaggcgaaccgggcgaggatggccccgcgggtcccgacggtccccccggtccccaaggt
ttggcaggacagcgcggcatcgtcggtcttcccggccagcgtggcgagagaggcttcccc
gggctgccggggccatcgggcgaacctgggaaacaaggagcacccggctctgcaggcgac
cgaggcccccccggccccgtgggaccccctggtctgacgggtcccgccggcgaacctggg
cgagaggggaaccccggctctgatggcccccccggcagagacggcgcagccggcgtcaag
ggtgatcgtggcgagaccggccccgtgggtgcccccggcgctcccggtgcccccggcgct
cccggccccgtgggtcccactggcaaacaaggagacagaggcgagacgggtgcacaaggt
cccatgggtccctcgggtcccgctggcgctcgaggcatgccgggtccccaagggccacgc
ggtgacaagggtgagacgggagaggctggagagagagggctgaagggccaccgcggcttc
accgggctgcagggtcttcccggcccacccggtccctccggagaccaaggtgctgctggt
cccgccggtccctccggtcccaggggtccccccggccccgtcggcccctctggcaaagac
ggctccaacggcatgcccggccccatcggtccccccggcccccgcggacgaagcggggaa
ccaggtcctgcgggtcctcccggaaacccaggtccccccggtcctcccggcccccctggc
actggcatcgatatgtcggctttcgctggtctgggtcagccggagaagggccccgacccc
atccgctacatgcgggcggacgaggccgccggcagcctgcggcagcacgacgtcgaggtg
gacgccacgctcaagtccctcaacaaccagattgagagcatccgcagccccgagggctcc
aagaagaacccggccaggacctgccgcgacatcaagctttgccatcccgagtggaagagc
ggagactactggattgacccgaaccagggctgcaccttggacgccatcaaagttttctgc
aacatggagacaggcgaaacctgcgtctaccccaaccccagcagcatccccaagaagaac
tggtggaccagcaagaccaaagacaagaagcacgtctggttcgcagagaccattaacggc
ggtttccactttagctacggcgatgaagacctggctcccaacaccgccaacatccagatg
accttcctccgcctcttgtccaccgaaggctcccagaacgtcacttaccactgcaagaac
agcatcgcctacatggacgaggagacgggcaacctgaagaaagccatcctcatccaggga
tccaacgacgtggagatcagagccgagggcaacagcaggttcacatacagcgtcttggag
gacggttgcacgaaacacactggcaaatggggcaagacagtcattgagtaccggtcgcag
aagacctcgcgcctgcccattgtagatattgcacctatggacattggtggagccgatcag
gagtttggcgtggatattggcccagtctgcttcttgtaa
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