Rissa tridactyla (black-legged kittiwake): 128901736
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Entry
128901736 CDS
T09443
Symbol
SYMPK
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd03015
mRNA surveillance pathway
rtd04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128901736 (SYMPK)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
128901736 (SYMPK)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtd03021
]
128901736 (SYMPK)
03019 Messenger RNA biogenesis [BR:
rtd03019
]
128901736 (SYMPK)
Transcription machinery [BR:
rtd03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
128901736 (SYMPK)
Messenger RNA biogenesis [BR:
rtd03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
128901736 (SYMPK)
U7-dependent histone pre-mRNA processing factors
128901736 (SYMPK)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Cnd1
Cohesin_HEAT
INTS7_N
Motif
Other DBs
NCBI-GeneID:
128901736
NCBI-ProteinID:
XP_054039863
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All DBs
Position
27:complement(170886..183653)
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AA seq
1175 aa
AA seq
DB search
MAGPGGAEGPSPRRSVASQFFSEEESGDGRSTSERVVDLLNQAALISTDSKITILKQVQE
LIINKDPTLLDNFLDEIIAFQADKSIEVRKFVVGFIEEACKRDIELLLKLIANLNMLLKD
ENVNVVKKAILTMTQLYKVALQWMVKSKVISELQEACWEMMAAMASDIILLLDSDNDGIR
THAIKFVEGLIITLSPRMADSDVPKRHENDISLERIPKDHPYIKYNVLWEEGKAALEQLL
KFMVHPAISSINLTAALGSLATIARQRPMFMAEVIQAYETLHANLPPTLAKSQVSSVRKN
LKLHLLSVLRHPSSGDFQPQITTLLVDLGTQQAEIARSMPSPRDTRKRPRDEPDATLKKM
KIEPPLGEDDEDKDLEPPMVAAPKAAGQASVPSDTDITAEFLQPLLTPENVANLVLISMV
YLPEAMPASFQATYTPVESAGTEAQIKHLARLMATQMTAAGLGPGVEQTKHLKEEPKEEK
AAKPESVVIKRRLSALAQGQAISVLGAQGSAANLLEEEAPQAKRRPEPIIPATQPRLAGA
GGRKKVFRLADVLKPLSDAQMEKLKLSAIKRILRAERAVACSGAAQARVKILASLVTQFE
VPLKSEVLAFILDDVRGRLDLAFAWLFQEYNAYLSHLPAGSLERYDECLIGLLAGLQEKP
DQKDGIFTKVVLEAPLITESALEVIRKYCEDESRTYLGMSTLRDLIFKRPSRQFQYLHVL
LDLSSHEKDKVRQQALLFIKRMYEKDQLREYVEKFALNYLQLLVHPNPPSVLFGADKDTE
VAAPWTEETIKQCLYLYLALLPHNHKLIHELASVYTEAIADIKRTVLRVIEQPIRGMGMN
SPELLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVLNG
LEKKEVIQALPKLIKLNPIVVKEVFNRLLGTQHGDGASAVSPLNPGELLIALHNIDSSKC
DMKSIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQALTMYPRLGGFVM
NILSRLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVVLQLPPPQLAAIFDKCPELREPLLS
HVRALTPHQQAHIPLSTMAILEASTRHEPDAREGPPGEEKPPKRPNEEEAKGKAAAAAPG
GGPSTGAPPAPSEAPPELGGADLEPPPHLHQCPRG
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atggcggggccggggggggctgagggccccagcccccgccgcagcgtggcctcccagttc
ttcagcgaggaggagagcggggacggacggagcacctcggaacgggtggtggatctcctc
aaccaggcggccttgatcagcactgactccaagatcaccatcctcaagcaggtgcaggag
ctgatcatcaacaaggaccccacgctgctggacaacttcttggatgagatcatcgccttc
caggctgacaagtccatcgaggtgcggaagtttgtggtgggcttcatcgaggaggcgtgc
aagcgggacatcgagctgctgctcaaactgatcgccaacctcaacatgctgctgaaggat
gagaacgtcaacgtggtgaagaaggccatcctcaccatgacccagctctacaaggtggcc
ctgcagtggatggtgaagtcgaaggtgatcagcgagctgcaggaggcttgctgggagatg
atggcggccatggccagcgacatcatcctcctcctggactcggacaacgacggcatccgc
acccacgccatcaagtttgtggaggggctcatcatcaccctctcgccccgcatggccgac
tctgacgtccccaagcgccacgagaacgacatcagcctggagcgcattcccaaggaccac
ccctacatcaaatacaacgtgctgtgggaggagggcaaggccgccctggagcagctcctc
aagttcatggtgcacccggccatctccagcatcaacctgacggccgcgctgggctccctg
gccaccatcgcccgccagcggcccatgttcatggctgaggtcatccaagcctatgagacc
ctccacgccaacctgccccccaccctggccaagtcgcaggtgagcagcgtccgtaagaac
ctgaagctgcacctcctgagcgtcctgcggcacccgtcctcgggggacttccagccccag
atcaccaccctcctcgtcgacctgggcacccagcaggccgagattgcccgcagcatgccc
agcccccgcgacacccgcaaacgaccccgtgacgagcccgacgccaccctcaagaaaatg
aagattgaaccccccctgggtgaggacgacgaggacaaggacctggagccgccgatggtg
gcggcccccaaagctgccggccaggccagcgtcccctcggacacggacatcaccgccgag
ttcctgcagccgctgctcaccccggagaacgtcgccaacctggtgctgatcagcatggtg
tacctgcccgaggccatgcccgcctcctttcaggccacctacacccccgtggagtcggcc
ggcaccgaggcgcagatcaagcacctggcccggctcatggccacccagatgacagcggcg
gggctcggcccgggcgtggaacagacgaagcacctgaaggaggagccgaaggaggagaag
gcggccaagccggagagcgtggtgatcaaacggcggctctcggcgctggcccagggccag
gccatctcggtgctgggtgcccaaggctcggctgccaacctgctggaggaggaagccccc
caagccaagcgtcgccccgagcccatcatcccggccacgcaaccccggctggcgggcgcc
ggcggccgcaagaaggttttccgcctggccgacgtcctgaagccgctgagcgacgcgcag
atggagaagctgaagctgagcgccatcaagcgcatcctgcgcgccgagcgcgccgtggcc
tgcagcggggctgcccaggcccgcgtgaagatcttggcttcgctggtgacgcagttcgag
gtgccgctgaagagcgaggtgctggccttcatcctcgacgacgtccgcggccgcctggac
ctggcctttgcctggctcttccaggagtacaacgcctacctgagccacctccccgccggc
agcctggagcgctacgatgagtgtctcatcgggctcctcgccggcctccaggagaagcct
gaccagaaggacgggattttcaccaaagtggtgctggaggcgccgctgatcaccgagagc
gccctggaggtcatccgcaagtactgcgaggacgagagccggacctacctgggcatgtcc
acgctgcgcgacctcatcttcaagcggccgtcgcggcagttccagtacctccacgtccta
ctggacctcagctcccatgagaaggacaaggtccgccagcaggccctgctcttcatcaag
cgcatgtacgagaaggaccagctacgggagtatgtggagaagttcgccctcaactacctg
cagctcctggtgcaccccaacccaccctccgtcctcttcggggctgacaaggacacggag
gtggccgcgccgtggacggaggagaccatcaagcagtgcctctacctctacctggcgctg
ctgccccacaaccacaagctcatccatgagttggcgtccgtctacaccgaggccatcgcc
gacatcaagcgcaccgtcctgcgggtcatcgagcagccgatccgggggatggggatgaac
tcgcccgagctgctgctgctggtggagaactgccccaagggagccgagacgctggtgacg
cgctgcctgcacagcctgacggacaaagtgcccccctcgcccgagctggtgaagagggtc
cgtgatctctatcacaaacggctgccagacgtgaggttcctcatccctgtcctcaacggg
ctggagaagaaagaggtgatccaggccctgcccaaactcatcaagctcaaccccattgtg
gtcaaggaggtcttcaaccgcctgctggggacacagcacggtgacggcgcctcggccgtg
tccccgctgaacccgggggagctgctgatcgccctgcacaacatcgactcctccaagtgc
gacatgaagtccatcatcaaggccaccaacctgtgcttcgccgagcgcaacgtgtacacc
tcggaggtgctggcggtggtgatgcagcagctgatggagcagagccccctgcccatgctg
ctcatgcgcaccgtcatccaggccctcaccatgtacccccgcctgggcggcttcgtcatg
aacatcctctcccgcctcatcatgaagcaggtgtggaagtaccccaaggtgtgggagggg
ttcatcaagtgctgccagcgcacgaagccccagtccttccaggtggtgctgcagctgccc
cccccccagctggccgccatcttcgacaagtgccctgagctgcgggagccgctgctcagc
cacgtccgggccctcaccccccaccagcaagcccacatcccgctctccaccatggccatc
ctggaggcttccacccgccacgagcccgacgcccgggaggggccccctggagaggagaag
cccccgaagcggcccaacgaggaggaggcaaaggggaaggcggccgccgcagcgccgggg
gggggtcccagcacaggggccccccctgccccctccgaagcaccccccgagctggggggg
gccgatctcgagccccccccccatcttcatcagtgtccccgaggatga
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