KEGG   Rissa tridactyla (black-legged kittiwake): 128902170
Entry
128902170         CDS       T09443                                 
Symbol
VCP
Name
(RefSeq) transitional endoplasmic reticulum ATPase isoform X1
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
rtd  Rissa tridactyla (black-legged kittiwake)
Pathway
rtd04137  Mitophagy - animal
rtd04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:rtd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    128902170 (VCP)
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    128902170 (VCP)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rtd03019]
    128902170 (VCP)
   03009 Ribosome biogenesis [BR:rtd03009]
    128902170 (VCP)
   04131 Membrane trafficking [BR:rtd04131]
    128902170 (VCP)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:rtd04147]
    128902170 (VCP)
Messenger RNA biogenesis [BR:rtd03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     128902170 (VCP)
Ribosome biogenesis [BR:rtd03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    128902170 (VCP)
Membrane trafficking [BR:rtd04131]
 SNARE
  SNARE associated proteins
   Others
    128902170 (VCP)
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    128902170 (VCP)
Exosome [BR:rtd04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   128902170 (VCP)
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N RuvB_N AAA_16 CDC48_2 AAA_5 AAA_33 AAA_2 AAA_22 TIP49 AAA_14 NPHP3_N RNA_helicase Vps4_C AAA_28 nSTAND3 Parvo_NS1 Mg_chelatase AAA_17 IstB_IS21 ATPase_2 AAA_18 AAA_7 ATPase DUF815 ABC_tran AAA_24 TsaE NB-ARC ResIII Viral_helicase1 NACHT Sigma54_activat SLFN-g3_helicase KAP_NTPase Zot DUF3944
Other DBs
NCBI-GeneID: 128902170
NCBI-ProteinID: XP_054040599
LinkDB
Position
Z:76488906..76516962
AA seq 806 aa
MASGSDSKADDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQAKMDELQLFRGDTVLLK
GKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPID
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG
GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRV
INQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN
LRKSPVAKDVDLDFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAM
EVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSGNQGG
AGPSQGTGGGSGGNVYSEDNDDDLYG
NT seq 2421 nt   +upstreamnt  +downstreamnt
atggcctcgggatccgattctaaagcggatgacttatcgactgctattctgaagcagaag
aacaggcccaatcggttaattgttgatgaagccatcaatgaagacaacagcgttgtgtca
ctgtcccaggcaaaaatggacgaattgcaactgttcagaggagacaccgtcctgctaaaa
gggaagaagaggagagaagcggtctgcattgttctctcagatgatacatgctcagatgag
aagattcgcatgaatagggttgttcgcaacaacctgagagtgcgcctgggtgatgtcatc
agcatccagccttgcccagatgtgaaatacggcaaacgtatccatgtgctgccaattgat
gacacagtagaagggatcacagggaatctgtttgaggtctatctcaagccatacttcctg
gaagcatacagacccatcaggaaaggtgacatcttcttggtgcgtggagggatgcgtgca
gtggagttcaaagtggtggagacagatccaagtccatactgcatagtggctccagacaca
gtgatccattgtgaaggagagcccatcaaacgagaggatgaagaggagtcactgaatgaa
gttggctatgatgacattggtggctgccggaagcagctggctcaaatcaaagagatggtg
gaacttccactccgacaccctgcgctcttcaaggccataggggtgaagcctccacgtggg
atcctgctatatggtcctcctggcactggtaaaacactgattgcccgagcagtggccaat
gaaacgggggctttcttcttcctgatcaatggtcctgagatcatgagcaaactggctggt
gagtctgaaagcaatctgagaaaagcctttgaagaagcagagaagaatgctcctgccatc
atcttcattgatgaactggatgccattgctcctaagagagagaagacacatggagaggtg
gaacgtcgtatagtgtctcagctgctgactcttatggatggactgaaacagagagcacac
gtgatcgttatggcagctactaatagacctaacagcattgacccagcactcaggcgattc
ggtcgttttgacagagaggtggatattggtattccagatgccactgggcgcctggagatc
ctgcagatccacacgaaaaatatgaaactggctgatgatgtggatctggaacaggtggca
aacgagacccatggccatgttggtgctgacttggctgctctttgctcagaagctgctctt
caggctatcagaaagaagatggatctcatagacctagaagatgaaaccatcgatgctgaa
gtgatgaactcgctggctgtgaccatggatgacttcaggtgggctctgagccagagcaac
ccttctgctcttcgggagactgtggtggaggtgccacaagttacctgggaagatatcggt
ggtctagaagatgtaaagagagaactccaggagctcgtacagtatcctgtggagcaccca
gacaaattcctcaaatttggtatgaccccatcaaaaggggttctgttctacgggccacct
ggttgtggtaagacactgctggccaaagccattgccaacgaatgccaggcaaacttcatt
tccatcaaggggccagaattactcaccatgtggtttggcgagtctgaagccaatgtgcgc
gagatctttgacaaggcccgtcaagcagccccttgtgtgctcttttttgatgagctggac
tccatcgcaaaggctcgaggtgggaatattggcgatggtggtggtgctgcagaccgggtc
atcaaccagatcctgacagagatggacggcatgtccaccaagaagaatgtcttcatcatt
ggtgccaccaacaggccagacattattgacccagccatcttgcgccccggccgcctggat
cagctcatctacatccccctgcctgacgagaagtcccgggttgctattcttaaggccaac
ctgaggaaatcgccagttgccaaggatgtcgatctggatttcctagctaagatgaccaat
ggcttttcaggggctgacctgacagaaatttgccagcgtgcctgcaaactggcaatccgt
gagtccatcgagagtgagatcaggcgagaacgcgagaggcagaccaacccttccgccatg
gaagtggaagaggatgacccggttcctgagatacgcagggaccactttgaggaggccatg
cgcttcgctcgccgctctgtcagtgacaacgacatcaggaaatacgagatgtttgcacag
actctacagcagagccgcggcttcggcagcttcaggttcccatcaggtaaccagggcggt
gctgggcccagccaaggcacaggaggtggcagcgggggcaacgtgtacagcgaagacaac
gacgatgatctctacggttaa

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