Rissa tridactyla (black-legged kittiwake): 128902375
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Entry
128902375 CDS
T09443
Symbol
PTCH1
Name
(RefSeq) protein patched homolog 1 isoform X1
KO
K06225
patched 1
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
128902375 (PTCH1)
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Gene cluster
GFIT
Motif
Pfam:
Sterol-sensing
Patched
Motif
Other DBs
NCBI-GeneID:
128902375
NCBI-ProteinID:
XP_054041267
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All DBs
Position
Z:41926269..42001379
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AA seq
1444 aa
AA seq
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MASPGNASEPETSSSAGGGGGGHPGRVARNGGGRRRRTGGNRRAAAPDREYLQRPSYCDA
AFALEQISKGKATGRRAPLWLRAKFQRLLFKLGCYIQKNCGKFLVVGLLIFGAFAVGLRA
ANLETNVEELWVEVGGRVSRELNYTRQKIGEEAMFNPQLMIQTPQEDGANVLTAEALRQH
LDSALQASRVHVYMYNRQWKLEHLCYKSGELITEAGYMDQIIEYLYPCLIITPLDCFWEG
AKLQSGTAYLLGKPPLQWINFDPLEFLEELKKINYQVESWEEMLNKAEVGHGYMDRPCLN
PADPDCPITAPNKNSTKPLDVALVLSGGCYGLSRKYMHWQEELIVGGTVKNSSGKLVSAQ
ALQTMFQLMTPKQMYEHFKGYEYVSHINWNEDKAAAILEAWQRMYVEVVHQSVAQNSTQK
VLSFTTTTLDDILKSFSDVSVIRVASGYLLMLAYACLTMLRWDCAKSQGAVGLAGVLLVA
LSVAAGLGLCSLIGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTG
ECLKRTGASVALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSM
DLYRREDRRLDIFCCFTSPCVTRVIQIEPQAYAENDNTCYSPPPPYSSHSFAHETQITMQ
STVQLRTEYDPHTQVYYTTAEPRSEISVQPVTVTQDNLSCQSPESTSSTRDLLSQFSDSS
MHCLEPPCTKWTLSSFAEKHYAPFLLKPKAKIVVIFLFLGLLGLSLYGTTRVRDGLDLTD
IVPRETREYDFIAAQFKYFSFYNMYIVTQKADYPNVQHLLYELHRSFSNVTYVLLEEDRQ
LPKMWLHYFRDWLQGLQDAFDSDWETGKITYNNYKNGSDDAVLAYKLLVQTGNRAKPIDI
SQLTKQRLVDADGIINPNAFYIYLTAWVSNDPVAYAASQANIRPHRPEWVHDKADYMPET
RLRIPAAEPIEYAQFPFYLNGLRETSDFVEAIEKVRAICSNYTSLGIASYPNGYPFLFWE
QYIGLRHWLLLSISVVLACTFLVCALFLLNPWTAGIIVVVLALMTVELFGMMGLIGIKLS
AVPVVILIASVGIGVEFTVHVALAFLTAIGDRNHRAVLALEHMFAPVLDGAVSTLLGVLM
LAGSEFDFIVRYFFAVLAILTILGVLNGLVLLPVLLSFFGPYPEVSPANGRNRLPTPSPE
PPPSIVRFALPAGHTNNGSDSSDSEYSSQTTVSGISEELHQYEATQGPGAPVHQVIVEAT
ENPVFARSTVVQPETRHQSSPRLQSNPESGTQQAWRQGRQPKREAREGLRPPPYRPRRDA
FEISTEGHSGPSNRDRVGHRARSHNMRSPAFGAVGAAGPAYCQPITTVTASASVTVAVHP
AVHSHGSRGGSFPSYEGYHEADHGPFEDPHVPFNVRCERRNSKVEVIELQDVECEERVPG
NSSQ
NT seq
4335 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgcccggtaacgcgtcggagccggagaccagcagcagcgcgggcggcggcggc
ggcggccaccccggccgggtggcgaggaacggcggcgggaggcggcgaaggaccggaggg
aatcggcgcgccgcggcgcccgaccgggagtatctgcagcggccaagctactgcgatgcg
gctttcgccttggagcagatctcaaaggggaaggcgacgggccggagagcgccgctgtgg
ctgcgagcgaagtttcagagactgttgtttaaactgggctgttacattcagaaaaactgc
gggaagttcttggttgtcggccttctcatatttggggcattcgctgtaggattacgggca
gctaacctcgagacaaacgtggaggagctgtgggtggaagttggtggacgagtgagtcgg
gagttaaattacacacggcagaagattggagaagaggccatgtttaacccccaactcatg
atccagactccacaggaagatggtgctaatgtactaacagcagaagcactccgccagcac
cttgactctgcacttcaggccagcagagtacatgtctatatgtacaacagacaatggaaa
ttggaacatttgtgttataaatcaggagagctcatcacagaagcaggttacatggaccag
atcatagaatatctttatccttgcttaattatcactcctttggactgcttctgggaggga
gcaaagctacagtcaggaactgcctatctattagggaagcctcctttgcagtggatcaac
tttgaccccttagaattcttagaagagttaaagaaaataaactaccaagtggagagctgg
gaagaaatgctgaataaagcagaggttggtcatggttatatggatcgaccctgcctgaat
cctgctgatcccgattgcccaatcacagctcccaataaaaattccaccaaacctcttgat
gtagcccttgttttaagcggtggatgctatggactgtcaaggaaatacatgcattggcag
gaggagctgatcgtaggtggtacagtcaagaacagttctggtaaacttgtcagtgcccaa
gctttgcaaaccatgtttcagttaatgactcctaagcaaatgtatgagcacttcaagggg
tatgaatatgtttcacatatcaactggaacgaggataaggcagcagcaattctggaagcc
tggcagaggatgtatgttgaggttgttcatcaaagtgttgcacaaaactctactcagaag
gtgctctcctttactacaaccaccctggatgacatcctaaagtcattttctgatgtcagt
gttatcagagtagccagtggctacttactaatgcttgcctacgcctgtttaacaatgctg
cggtgggactgtgccaagtctcagggtgccgtggggttggcaggagtcttgttggttgca
ctctcagtggctgcaggattgggcctgtgctcattgattggaatttcctttaatgctgcc
acaactcaggttttgccttttcttgctcttggagttggtgtagacgatgttttccttctg
gcacatgcatttagtgaaacagggcagaataagagaattccatttgaggacagaacaggt
gaatgtttgaagcgaacaggagcaagcgtagccctgacatctatcagcaatgtcactgct
ttctttatggctgccttaatccctattcctgctttacgagcattttcactccaagcagcg
gttgtggtggtattcaactttgctatggttctgctgatttttcctgccatcctgagcatg
gacctttatcgtcgggaagacaggagactggatatattctgctgttttacaagtccgtgt
gtcaccagagtgattcagattgagcctcaagcatatgcggaaaatgacaatacctgctac
agtcctccacccccatacagtagtcacagttttgcacatgaaactcagattacaatgcag
tctacagtgcagttgcgcacagaatacgatccccatacgcaggtgtactacaccacagca
gagcctcgctcagaaatatctgtgcagccagtgaccgtgacgcaagataatcttagctgc
cagagtccagaaagcacaagctcgacgagggatttgctttcccaattctcagactccagt
atgcattgccttgagccaccctgtacgaagtggacactctcatcttttgcagaaaagcat
tatgctccattcctcctaaaaccaaaagctaagattgtggttatttttctttttctgggt
ttacttgggctcagcctttatggaactacccgggtgagagatggactagatctcacagac
attgtgccacgggagacacgggaatatgactttattgccgcacagttcaagtacttttca
ttctacaacatgtatattgtgacacagaaagcagactatccaaacgtccagcacttactt
tatgaacttcacagaagtttcagcaatgtgacatacgttttgttggaagaggacaggcag
cttcccaaaatgtggttgcactattttcgagactggctgcaaggacttcaggatgcattt
gacagcgactgggaaactgggaagatcacttacaacaattataaaaatggatctgatgac
gctgttttggcttacaaactcttggtacaaacaggcaaccgagcaaagcccattgacatc
agccagttgactaaacagcgtctggtggatgcggatggaatcattaacccaaatgctttc
tacatctacctgacagcctgggttagcaatgaccctgtggcctatgctgcctcgcaagcc
aacatccggcctcaccgcccagagtgggtccatgacaaagcagactatatgccagaaaca
aggctgagaattccagcagctgagcccatagaatatgctcagtttcctttctacctcaac
ggattgcgtgaaacttctgattttgtggaggctatcgagaaagtgagagctatctgtagt
aactacaccagcctggggatcgccagctacccaaatggttacccgtttctgttttgggag
cagtacattgggcttcgtcactggctcctcttatccattagtgtggttttggcttgcacg
tttctggtgtgtgccctcttcctcctaaacccctggacggctgggatcattgtggtggtg
ctggctctaatgactgtggagctgtttggcatgatgggtctaattggaataaagctgagt
gcagtgcctgtggttatcctgattgcttctgttggcattggcgtggaattcactgttcat
gttgctttggcatttttaactgccataggagacaggaaccacagggctgtcctcgcattg
gaacacatgtttgcgccagtgctggatggggccgtgtccactctgcttggagtgttaatg
ctcgcaggatcagagttcgattttattgtcaggtatttctttgctgttttggcaatctta
accattctgggagttctcaatggattggtgctgcttcctgttcttctttcgttctttgga
ccataccctgaggtttctccagccaatggacgaaacagattgcccacaccgtctcctgag
ccacccccaagcatcgtgaggtttgcattgccagctgggcacacaaataatgggtcagat
tcctctgattcagagtacagctctcaaaccacagtgtccggcatcagtgaagagcttcat
cagtatgaggccacccaaggtcccggggcaccagtccatcaagtaatagtggaagcaact
gagaatcctgtctttgcaagatccactgtggttcagccagagacaaggcatcagtcgagt
cccagattacaatcaaatccggagtctggcacacagcaggcgtggcgtcagggcagacaa
cccaaacgggaagcgagggaagggctgcgaccacctccttaccgccctcgcagggacgct
tttgaaatttctactgaagggcattcaggacctagcaatagggatcgcgtgggccacagg
gctcgttctcataacatgagaagcccggcgtttggcgccgtgggcgccgcaggaccagcg
tactgccagcctatcactactgtgactgcctcggcttcagtgactgttgctgtccaccct
gcggtgcacagccacggctcccggggagggagctttccgtcctatgagggataccatgaa
gctgaccacgggccatttgaggacccccatgtgccttttaacgtgcgatgtgaaagaaga
aattctaaagtagaagttatagaactccaagatgttgaatgtgaggaaagggtacctggc
aacagctcacagtaa
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