Rissa tridactyla (black-legged kittiwake): 128902380
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Entry
128902380 CDS
T09443
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128902380 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtd03019
]
128902380 (MTREX)
03041 Spliceosome [BR:
rtd03041
]
128902380 (MTREX)
03009 Ribosome biogenesis [BR:
rtd03009
]
128902380 (MTREX)
03016 Transfer RNA biogenesis [BR:
rtd03016
]
128902380 (MTREX)
Enzymes [BR:
rtd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128902380 (MTREX)
Messenger RNA biogenesis [BR:
rtd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
128902380 (MTREX)
Spliceosome [BR:
rtd03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
128902380 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
128902380 (MTREX)
Ribosome biogenesis [BR:
rtd03009
]
Eukaryotic type
Pre-60S particles
Helicases
128902380 (MTREX)
Transfer RNA biogenesis [BR:
rtd03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
128902380 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Helicase_dom4_arc
AAA_22
Motif
Other DBs
NCBI-GeneID:
128902380
NCBI-ProteinID:
XP_054041281
LinkDB
All DBs
Position
Z:complement(67767887..67814202)
Genome browser
AA seq
1034 aa
AA seq
DB search
MADAFGDELFSVFEEDPAAAASGAKKSKAGGTEGARRPGKRSEEKCSVAVTGKTKREVEV
DSTKDAVLGKKPKLEDVVSEDANLAELMPQVKVQAVETVEGCTHEVALPADEEFTGLKPR
TGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFT
SPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAW
VIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIY
TDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGT
KGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAI
DCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMG
INMPARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIG
KQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVERVNTL
EGQYNKIAIPNEDNVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKNEGDD
FGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCSKESLKNSATEAAKPARPDEKGEMQV
VPVLVHLLSAISSVRLYIPKDLRPIDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDQ
GLKKVIQKVEAFEHRMYSHPLHNDPNLETVYKLCEKKAQIAMDIKAAKRELKKARTVLQM
DELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATAL
LSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEENYLNSFKPNLMD
VVYTWANGANFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGIT
KIKRDIVFAASLYL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcgtttggcgacgagctcttcagcgtgtttgaggaggatccggccgccgcc
gcctccggcgccaagaagagcaaagcgggcggcaccgagggcgccaggagaccgggaaaa
cgatcagaggaaaaatgctcagtagctgtgacagggaagaccaaaagggaggttgaggtc
gatagtaccaaagacgctgttttgggaaagaagccgaaattggaagatgttgtatcagaa
gatgctaatctggcagaactgatgcctcaagtgaaagtgcaagctgtggagactgttgaa
ggttgtacacatgaggttgcgcttccagcagatgaagaattcactggtctgaaaccgaga
actggaaaagctgcaaaagaatatccatttattcttgatgcctttcagagagaagctatt
ctttgtgtagataataaccagtctgtgttagtgtcagctcatacatcagctggtaaaact
gtttgtgcagagtatgcaattgccctggctttgagggagaaacagcgtgtgatatttaca
agtccaattaaagctttgagtaatcagaagtaccgtgagatgtatgaagaatttcaggat
gttggtttgatgactggggatgtcaccattaatcccacagcttcttgtctggtcatgaca
actgagattttgagaagtatgctttacagaggttctgaggttatgcgagaagtcgcatgg
gtcatttttgatgaaatccactacatgagagattcagaacgtggtgttgtttgggaggag
acaattattttgcttcctgacaatgttcattatgtgttcctttctgcaactattccaaat
gcccgtcagtttgctgaatggatctgccatcttcacaaacagccttgccatgtgatttat
actgactatcgacccactccactgcagcattatatattcccagcaggaggagacggactc
catctggtggttgatgaaaatggggatttcagagaagataatttcaatacagcaatgcag
gtacttagagatgcgggagacttagcaaaaggggaccagaaaggcaggaaaggaggaacg
aaaggtccctcaaatgtttttaagattgtaaagatgatcatggaaaggaatttccaacct
gtgattattttcagcttcagtaagaaagactgtgaagcctatgcacttcagatgacaaag
ttggatttcaatacagatgaagaaaaaaagatggttgaagaagtgttcaataatgcaatt
gattgtctgtcagatgaagacaaaaagcttcctcaggttgagcatgtacttcctcttctg
aagcgaggaattggtatccatcatggcggtctgcttcccatcttaaaagaaactatagaa
attctcttctctgagggcctaataaaggccttatttgcaacagagacttttgcgatggga
attaatatgccagccaggactgtgctatttacgagtgccagcaaatttgatggaaaagat
ttccgatggatatcctcaggtgaatatattcaaatgtcaggtcgtgcaggacgccgaggt
atggatgacagaggaatagtaattcttatggtggatgaaaaaatgagtccaacaattggc
aagcagcttttgaagggttcagctgatcctttaaacagtgcattccatctgacgtacaac
atggtattgaacttgcttcgagtagaggaaattaaccctgaatacatgttagaaaaatcc
ttttatcagttccaacattacagaactattccagaaatagtagaaagagtgaatactttg
gaaggacagtacaacaaaatagcaattcccaatgaagataatgtggtcatatactacaaa
atccgacagcagcttgcaaaactgggtaaagagattgaagaatatattcacaaaccaaag
tattgcttgccctttctgcagccaggaagactggtaaaggtgaagaatgaaggtgatgac
tttggatggggagtggttgttaatttctctaagaaatcaaatgttaagccgaattctggt
gaattggacccgttatatgtagttgaagtgctactgcactgcagcaaggagagtttgaaa
aattctgctactgaggctgcaaagccagccagacctgatgagaaaggagagatgcaggtt
gttcctgttctggtacatcttctctctgctatcagcagtgttcgactttacataccgaaa
gacctgaggcctattgacaacaggcaaagtgtgttaaaatctatacaggaagtacagaag
cgatttcccgatggagtaccattactagaccctattgatgacatgggcatcaaagatcaa
ggactgaaaaaagttatccaaaaagtagaggcatttgagcataggatgtattcacatcct
cttcacaatgatcccaacttggaaactgtatacaaactttgtgaaaaaaaagcacagatt
gctatggatattaaagcagcaaagcgagaattgaaaaaagccagaactgtcttacaaatg
gatgaactcaaatgccgcaagcgtgttttgagaagactggggtttgccacatcttcagat
gttattgagatgaaaggaagggtcgcttgtgaaatcagcagtgctgatgaattactcctg
acagagatgatgttcaatggtctcttcaatgacttatctgcagaacaggcaactgcacta
ctaagctgttttgtgtttcaagagaactccagtgaaatgccaaagttgacagagcagttg
gcaggaccacttcggcaaatgcaggagtgcgcaaaaagaatcgccaaggtgtcagcagaa
gcaaaactggaaattgatgaggaaaattacttaaactctttcaaacccaacctaatggat
gttgtgtatacatgggcaaacggagccaactttgctcacatctgcaaaatgactgatgtc
tttgaaggtagcataattcgttgcatgagaaggctagaagaattgctccggcagatgtgc
caggctgcaaaagccattggaaacacagaattggaaaataagtttgcagaggggattaca
aaaatcaagagagatattgtgtttgctgcaagcctttacctgtaa
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