Rissa tridactyla (black-legged kittiwake): 128902867
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Entry
128902867 CDS
T09443
Symbol
FREM1
Name
(RefSeq) FRAS1-related extracellular matrix protein 1 isoform X1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128902867 (FREM1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
rtd04091
]
128902867 (FREM1)
Lectins [BR:
rtd04091
]
C-Type lectins
Lecticans
128902867 (FREM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Cadherin_4
Lectin_C
Calx-beta
Jag_N
Motif
Other DBs
NCBI-GeneID:
128902867
NCBI-ProteinID:
XP_054042505
LinkDB
All DBs
Position
Z:52288169..52366411
Genome browser
AA seq
2186 aa
AA seq
DB search
MKPFEKSWLFLLLPLLLRVVCSSFISVNLGLKVMKGQSVFLSEDDLKFSIPREKDVCKVE
VVINEPITQRVGKLTPEVFDCCFLPNEVKYTHNGCPILDEDVVMLRLYRFTETETFVEKF
TLRVQLLEPDCNIIKMRSHALEVPEHYGLSRAIDKNVLTFDYDRKINLDCTISIASSETH
LPAYGQLITGEVQREQLRGDQPQSFFPGPKHSLGQQCRNGSCVLRLGVIPNTKMSCEEFL
RMGIRYQHLDPPSPDTDYIPLRLDLTDSRSKTLHKTEYAWLPVQIKGAIPNQIPKAAPVA
KFTLEVDQFILTPITTTTVDAEDDETPKSLLVFNITKPPPRGFITHLSDHTKPVGSFTWK
DLSDMLIAYQPPNNSYTERRNYEVEFEVHDFYFERSLPITVHLSIRTTDTNAPRVSWNTG
LNLLEGQSRPITWQHFQIVDNDDIQNVRLVTVDGLQHGRLTVRGGKGFMFAVSDIQAGVV
RYHHDDSDSTKDFVVFRIFDGHHSIRHKFPINILPKDDSPPFLISNVVIEVHEGQTILIE
GSMLHASDMDSSDDYILFNITKPPQAGEIMKKPGPNLIGYTVSSFLQRDLFNGIIYYHHL
GGEVFEDSLEFVLCDSHDPPNLSEPQVMMVHIIPVDDQLPREAPGVTRHLVVKETEIAHL
TKKHLHFIDVEEEDRELTYTITTSPFFSCMHGHSDAGKLFMVDTIPKLVKDPAALALRSF
TQHAVNYMKVAYMPPLQDIGSEPQQVQFIFSVSNQHGGTLYGICFNITILPVDNQAPEVF
TSHLRVEEGGLSPVTEGHILISDVDTKREHLLLLLQRQPQHGAVELDGIPMNEGERLSCG
DLRTLAVRYRHDGSETLTDDVLFAATDGIHFVEFILQVKVLPVNDEPPVMRTGLVPVLHC
LEGEEVVLSSEYIYATDADSDDMKLMFMLARQPYHGIVRKAGIPVDRFSQADVISGLVTY
KHTGGEIGLTPSIEILTFVVSDGEAGLDVKDCCYDGPLPPPVPLHDPFPVYDLNITVFPV
DNQPPSIATGARFVVEEGSSAALTTNHLLATDPDTTADDLEFVLVSPPQFGYIENILPSP
GFEKSNIGISVASFQLKHLKALNINYVQARHVRMEPTADCFVLYVTDGLHRSAETPFFVL
INPINDEVPEFIARNITVQEGQMKELDLSVINAVDLDVPQDRLVFGVVQRPSHGFLINGI
HGNDILHYKQLINHNHHSHGLLVRDFSMELLKNGMKLMYMHDNSENLTDSFKIQLSDGKH
KVLRTISVKVIPVNDEKPVLSKKDDLEVNMGEARIISSAVLSAKDKDTPRERIYYLFERL
PENGQLQLKVGQGWTTIQTGMKCTQEELDMNLVRYVHTGAIGSKNQDSFTFYLWDGYNRS
PAVDFYINIKDMEKGDIAVFRKPLRVPKGDRGYITTNVLLALDGTDKPEELLYVITSPPQ
YGQIEYVSYPGIPITSFSQMDVARQIVCYVHNTKAVVPEDAFRFVISNGLRTKHGTFMIS
LEAVDQALPTLSRNAGLRLVEGAMALLSPDVLQLSDPDTAKENLTFLLAQLPQYGHLYYR
GAVLLQYNFTQQDVDNRDVAYKHRGGDSQIDRFTFVATDRTNQGFIVNGRVQSEPVAFTI
QVDHLDKVAPKIIHLRCFSDVELLKNGNYGIYITTRSLKASDPNTEDDKIFFKILRGPHY
GYLENITTGGFIQEGFTQKDLNNKIILYVINPSQEVNSDDLEFQVTDASGNSAVPQRLEL
RWSRIEMQQTEYEVCESVGVVSLKITRAGHSAESAFIAVKVNEISAMLGKDFTVTPSKLV
QFDPGMSTKTWNIAITYDGLEEDDEVFEVVLNSPVNAVLGTRTKAVVKILDSKGGQCSYS
HSSGQSKQDFSGRGTLFPVSSGSPSPPRPGNAPLEGIPPLPSKGMREHGEDPRQEHSLAN
QSRTRLKVTGNGRIVHPSSVFRNGTDVVFKYHGMVSLKIEDDTSSAKANKKAQVSVISQA
EPQINVVSSRKTEIPQADKAELASEASSRHQDFYSFPKACTPDLKGLLHYEESIQKLFQC
DGIIWKFWNSQSKEASTKKCPSGWSHHEGSCYFLVVNHKVTWNTAARACREQYLGSLASV
ANEQHMQWLWDFSGRKPFWIGLNDQVNPGHWEWNGGEPVTYINWRRGSYRFPKRGRNCVL
VQKRGKWQATDCRKVKRNSYICSRKL
NT seq
6561 nt
NT seq
+upstream
nt +downstream
nt
atgaagccctttgagaaaagctggttgtttctactgctgcctcttctgctaagagttgtc
tgctcctcctttattagtgtcaaccttgggctgaaggtgatgaagggacagtctgtcttc
ctgtcagaagatgacctcaagttttccatccccagggagaaggatgtctgcaaagtagaa
gttgtgattaatgagccaataactcagcgggttgggaaactaactccagaggtttttgac
tgttgcttccttccgaatgaagtcaaatatacccacaacggctgtcccattttagatgaa
gacgtggtcatgcttaggctgtacaggtttacagaaactgaaacgtttgtagaaaagttc
accctccgtgtgcagttacttgagccagactgtaacatcatcaaaatgcgctcccatgcc
ctggaggtccctgagcactatgggctgtccagggcgattgacaagaatgtcctcactttt
gactatgacaggaagataaatctggattgcaccatttctattgcctcttcggaaacccac
ctgcctgcttatggccagcttatcaccggggaagtgcagcgagagcagcttcgtggagat
cagccacagagcttcttccctggccctaagcacagcctgggccagcagtgcagaaacggg
agctgtgtgctgaggctgggagtcattcccaacacaaaaatgagctgtgaagaatttctg
aggatggggattcggtatcagcaccttgaccctccctcgcctgacaccgactacattcct
ctgaggttggatctcacagacagcagaagcaaaactctgcacaagactgagtacgcgtgg
ctccctgttcagattaaaggcgctattccaaaccaaatacccaaagctgccccggtggct
aagttcaccctggaagtagatcagttcattttaactcccattacaaccacaactgttgat
gctgaagacgatgaaactccgaagtccctgcttgtattcaacattaccaagccgcctcca
cggggcttcatcactcatctgtctgaccacacaaaacctgttggctccttcacgtggaag
gatctcagtgatatgctcattgcttatcagcctccaaataacagctacacagagaggagg
aattatgaggtggagtttgaggttcatgacttctactttgaaaggagtttaccgattact
gtgcatctttctatcagaacaacagatacaaatgctcctcgagtttcatggaacacgggc
ctcaacctcctggaagggcaatcccgaccaatcacatggcaacacttccaaattgtagac
aacgatgacatccaaaatgttcgcttggtcacagtagacggtttacagcatgggcggctc
acagtaagaggagggaagggattcatgttcgcagtctctgacattcaggctggagttgtt
cgctaccatcatgatgacagtgattctactaaggactttgtggtatttaggatttttgat
ggccaccacagtattcgccataagtttccaatcaatatcctccctaaagatgacagccct
ccatttcttatcagcaatgtggtcattgaagttcatgagggacagacgatcctgattgag
ggctccatgcttcatgcttctgacatggattccagtgatgactacatactattcaatatt
accaagccaccacaggctggagaaatcatgaagaaaccaggaccaaacctgataggatat
actgtcagcagttttcttcagagggatctatttaatggaataatttattaccatcatttg
ggaggagaagtatttgaagattcccttgagtttgtgctgtgtgatagccatgaccccccc
aatctctcagagccacaggtgatgatggtgcacattatccctgtggatgatcagctaccc
agggaagccccaggagtgacccgtcatctggttgttaaggagactgagattgctcaccta
actaagaaacatctccacttcatcgatgtggaagaggaagacagggaactcacgtacacc
ataaccacttccccatttttctcttgcatgcacggccattcagatgctgggaagttattt
atggtggacaccatccccaagctggtcaaggatcccgctgctctggcactgcggtcattt
actcagcatgctgtgaactacatgaaagttgcctacatgccgccactgcaggacatcggg
tctgaacctcagcaagtccagtttattttttccgtcagcaatcagcatggtggcactttg
tatgggatctgcttcaatattacaattcttcctgtggacaatcaagccccagaggttttt
acaagccatttgagagtggaagagggtggcctgagccctgtcacagagggacacattctc
atctctgatgtggacacgaaacgggagcatctcctcctcctcctgcagagacagcctcag
cacggggcggtggagctggatggcattcccatgaatgaaggcgagaggctttcctgtggg
gacctgcgtaccctggccgtcagatatcggcatgatggatctgagactctcactgatgat
gtcctcttcgcagccacagatggcatccactttgtagagttcatcctgcaggtcaaggta
ttgcctgtgaatgatgagccacctgttatgcgaacaggccttgttcctgtgctccactgc
ctggagggtgaagaagtggtcctctcctcagagtacatttatgccacggatgcagacagt
gatgacatgaaactgatgtttatgctggctcgccagccctaccacggcatcgtgaggaaa
gctggcattcctgtggatcgtttctcccaagccgatgtcatctctggcttagttacgtat
aagcacactggtggggagattggcctgacaccttccattgagatcttaaccttcgttgtc
tctgacggtgaggctggccttgatgtgaaggactgctgttatgatggacctcttcctcct
ccagttccgcttcatgatccatttccagtatatgatcttaacatcactgtatttccagtg
gacaaccagcctccatcaattgcaactggtgcaaggtttgtggtggaggagggctcctca
gcagcccttaccaccaaccatttgcttgccactgaccctgacaccactgcagatgactta
gagtttgtcttggtttctcctccccagtttggttacattgagaatatactgccttctcct
gggtttgagaagagcaacattggtataagcgtagcttcgtttcagctgaagcacctgaaa
gctctgaacataaactacgtacaagccaggcacgtgcgaatggagccaacagcagactgc
ttcgtactttatgtcaccgatgggctgcatcgctcagcagagactccatttttcgtgctg
atcaaccccatcaatgatgaagtcccagaattcatagcaaggaatattactgttcaagag
gggcagatgaaagagctggatctctctgttatcaatgcagttgatctggatgtgcctcaa
gaccgtttggtatttggggttgtgcagaggccctcgcacggattccttattaatggaatt
catggcaatgatattctacactataaacagttaattaaccacaaccaccacagccatggg
ttgcttgttcgtgacttttccatggagctactgaagaacggaatgaagctgatgtacatg
catgacaattcggaaaacctcactgacagctttaaaatccagctatcagatgggaaacac
aaagtcctcagaaccatttcagtaaaggtcattccagttaatgacgagaaaccagtgctg
agcaagaaggatgatttagaggtgaacatgggtgaagctcgaataatttctagtgctgtt
ctgtcagcgaaagataaagatacccccagggagagaatttactacttatttgaaagactt
ccagaaaatggtcagcttcagctcaaggtaggccaaggctggacgactatccaaactgga
atgaagtgcactcaggaagaactggatatgaaccttgtgagatacgtccatacaggagct
ataggatccaagaaccaagacagcttcacattttatctgtgggatgggtacaacagatca
ccagctgtggacttctacataaatatcaaggacatggaaaagggagacattgctgttttc
agaaagcctcttagagtgccaaaaggggatcggggctacattacaaccaatgtcctcctt
gcactggatggtactgacaagccagaggaactcctctatgtgataacctccccaccccag
tacgggcaaatagaatatgtcagctatcctggcatccccattacgagcttcagtcaaatg
gatgtagcaagacagatagtctgctatgttcacaacactaaagcagttgttcctgaagat
gcattcagattcgtcatcagcaatggactgaggactaagcatgggacattcatgatctcc
ttggaggcagtcgaccaagctttgcccacactgtctaggaacgcagggttaagactagtg
gaaggcgctatggcactcctttctcctgatgtcctgcagctttcagacccagacactgcc
aaagaaaaccttaccttcctcttggctcagctcccccagtacggtcatctctattatcga
ggggctgtgctactgcagtacaatttcacccagcaagatgtggacaacagggatgttgcg
tacaagcaccgaggtggggattcccagattgacagatttacatttgttgcaacagatagg
actaatcaaggcttcatcgtgaatggcagggtgcagagcgagccagtggcattcaccatt
caggtggatcatttggacaaagtggcaccaaaaattattcatctccgttgtttttctgat
gtggaactgctgaagaatggcaattatgggatctatattaccaccaggtccctgaaggca
tctgaccccaatacagaagatgacaaaatattttttaagatcttacgaggtcctcattat
ggctacctggaaaatataacaacaggtggatttattcaagaagggtttacccaaaaggat
ttaaacaacaaaatcatactgtatgtcatcaatccatcgcaggaggtgaattcagacgat
ttggagtttcaagtcacagatgccagtggaaactctgcagtgccccaaaggctggagcta
cggtggtctcggattgaaatgcaacagactgaatatgaagtatgtgagagcgtgggagta
gtgtctctgaaaatcaccagggcaggacattctgcggagtccgcctttattgccgtcaag
gtcaatgaaatatctgctatgctgggaaaagactttacagtgactccctccaagcttgtt
cagtttgatccaggaatgtcaaccaagacgtggaatatagcaattacctatgatggatta
gaggaagatgatgaagtctttgaagtagttctgaactcccctgtgaatgccgttcttggc
acccggacaaaagctgtagtgaaaattttggactcaaaaggaggtcagtgcagctattcc
cattcttctggccaaagcaagcaggacttctcggggagaggcacgctgtttccagtttcc
tcgggctccccatcacctcccaggcctggcaatgctcccttggaagggatcccaccgctt
ccttccaaagggatgagagagcacggagaggacccacggcaggaacacagcttggcgaat
cagtcaaggaccaggctgaaagtgactggaaatggcagaatagttcatccttcatctgta
tttagaaatggaactgatgtggttttcaaatatcatgggatggtatcactcaaaatagag
gatgacacctcatcagctaaagcaaacaagaaggctcaagtgtcagtaattagccaagca
gaaccacagataaatgtcgtctcctccaggaagacagaaatcccacaagctgataaggca
gaactggcatctgaagcaagctcaagacatcaggacttttactcttttccaaaggcctgt
acaccagatttaaaggggctcttgcattatgaagaaagcattcaaaagttatttcagtgt
gatgggataatatggaaattctggaattcccaaagcaaggaggcaagcacaaagaaatgt
ccctctggatggagtcatcatgagggcagctgctacttcctggtagtgaatcacaaggtc
acctggaacaccgctgctcgggcttgcagagaacaatacctggggagtctagcaagtgtg
gctaatgaacaacacatgcagtggctgtgggacttcagtgggaggaagcccttttggata
ggcttgaatgaccaagtcaatccgggacattgggagtggaatggaggagaacctgtaacc
tacataaactggagaagaggctcctaccgcttcccaaagagaggcagaaattgcgtattg
gtgcagaagcgaggaaaatggcaagcaactgactgcaggaaggtcaaacggaacagctat
atatgttcaagaaagctgtaa
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integrated database retrieval system
