Rissa tridactyla (black-legged kittiwake): 128902985
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Entry
128902985 CDS
T09443
Symbol
CHD1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtd03021
]
128902985 (CHD1)
03036 Chromosome and associated proteins [BR:
rtd03036
]
128902985 (CHD1)
Transcription machinery [BR:
rtd03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
128902985 (CHD1)
Chromosome and associated proteins [BR:
rtd03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
128902985 (CHD1)
SLIK complex
128902985 (CHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
Motif
Other DBs
NCBI-GeneID:
128902985
NCBI-ProteinID:
XP_054042767
LinkDB
All DBs
Position
Z:29149230..29209189
Genome browser
AA seq
1837 aa
AA seq
DB search
MNGHSDEESIRNSSAESSQSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGT
QSESESDTSREKKQIQAKPPKVDGSEFWKSSPSILAVQRSAVLKKQQQQQKAASSDSGSE
EDSSSSEDSADDSSSETKKKKHKDEDWQMSGSGSVSGTGSDSESEEDGEKSSCEESESDY
EPKNKVKSRKPPTSIVYTLLSSRIKSKSGKKGAVLKKRQLDSSEDEEEEDDDDDDDYDKR
GSRRQATVNISYKEAEETKTDSDDLLEVCGEDVPQPEEDEFETIEKFMDSRVGRKGATGA
ATTIYAVEADGDPNAGFEKSKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVKGMKKLD
NYKKKDQETKRWLKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYY
CKWQGLPYSECSWEDGALIAKKFQARIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQP
SYIGGHESLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLY
GPFLLVVPLSTLTSWQREIQTWAPQMNAVVYLGDITSRNMIRTHEWMHPQTKRLKFNILL
TTYEILLKDKSFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL
KELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKV
EQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDD
NEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFP
FQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQN
DLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTILHT
GSTPSSSTPFNKEELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENEPGPLT
VGDELLSQFKVANFSNMDEDDIELEPERNSRNWEEIIPELQRRRIEEEERQKELEEIYML
PRMRNCAKQISFNGSEGRRSRSRRYSGSDSDSISERKRPKKRGRPRTIPRENIKGFSDAE
IRRFIKSYKKFGGPLERLDAVARDAELVDKSETDLRRLGELVHNGCIKALKDNSSGQERA
GGRLGKVKGPTFRISGVQVNAKLVISHEEELAPLHKSIPSDPEERKRYVIPCHTKAAHFD
IDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTQKVLHLKLSFRHSTGEQQILPDDPD
KKPQAKQLQTRADYLIKLLNKDLARKEAQRLAGAGNSKRRKARTKKNKVTKAAKIKEEIK
SDSSPQPSEKSDEDDDEDNKDEIVSVKQPHKKIKAEKENEEKPEPDIGIKKEAEEKRETK
EKENKRDLKREKKEKEDKKELKEKDIKEKRENKVKESTQKEKEVKEEKVNEIKSENKEKT
KKMPLLDTPVHITATSEPVPILEESEELDQKTFSVCKERMRPVKAALKQLDRPEKGLSER
EQLEHTRQCLIKIGDHITECLKEYTNPEQIKQWRKNLWIFVSKFTEFDARKLHKLYKHAI
KKRQESQQQNDQNISSNVNTHVIRNPDVERLKENTNHDDSSRDSYSSDRHLSQYHDHHKD
RHQGDAYKKSDSRKRPYSAFSNGKDHRDWDHYKQDSRYYSDSKHRKLDDYRSRDHRSNLE
GSLKDSRAHSDHRSHSDHRIHSDHRSSSEYSHHKSSRDYRYHSDWQMDHRASGSGPRSPL
DQRSPYGSRSPLGHRSPFEHSSDHKSTPEHTWSSRKT
NT seq
5514 nt
NT seq
+upstream
nt +downstream
nt
atgaatgggcacagtgatgaagaaagcataagaaacagtagtgcagagtcaagccaatca
gatgatgattccgggtcagcatcaggttctggatctggttcaagctctggaagcagtagt
gacggaagcagcagccagtcaggcagcagtgactctgactctggttcagagtcaggcact
cagtcagaatcagagtctgacacgtctagagagaagaaacaaattcaagcgaaaccacca
aaagttgatggatccgagttttggaagtctagtccaagtatacttgctgtgcaaagatca
gcagtgctaaagaagcaacagcaacaacaaaaggcagcctcatcagacagtggctcagaa
gaggactcatcaagtagtgaagattctgcagatgactcatccagtgaaaccaagaagaaa
aaacataaagatgaagactggcaaatgtcgggatcagggtcagtatcgggaactggttcc
gattctgaatcagaggaagatggggagaaaagcagttgcgaagagagcgaatctgactat
gagccaaaaaacaaggttaaaagccgtaaacctccaaccagtattgtttataccttattg
tcttcaagaattaagtcaaaaagtgggaaaaagggtgcagtactgaaaaagaggcagctt
gattcatcagaggatgaggaagaggaggatgatgatgatgatgatgattatgataagaga
ggatctcgtcgccaggcaacggtcaacattagttacaaagaagctgaagaaaccaagaca
gattctgatgatttgcttgaagtttgtggagaagatgtcccacaacctgaagaagatgaa
tttgaaactatagagaagttcatggatagtcgagttggccgaaaaggagccacaggtgct
gcaaccaccatctatgcagttgaggcagatggtgacccaaatgctgggtttgaaaagtca
aaggagccaggagaaatacaatatcttattaaatggaaaggttggtcacacatccataac
acttgggaaactgaggaaacgctgaagcaacaaaatgttaaaggaatgaagaaactggac
aactataagaaaaaggatcaggaaacaaaacgatggctgaaaaatgcttctccagaagat
gtggaatattacaactgccagcaggagcttacagatgatctgcataaacagtaccagata
gtggaaagaataattgctcattcaaatcagaaatcagcggctggttatccagactactac
tgtaagtggcagggtctgccttattcagaatgtagctgggaagatggtgcgctcattgcc
aaaaagtttcaggcacgcattgacgagtactttagcagaaatcaatccaagaccactccc
tttaaggactgcaaggttttaaagcagaggccaaggtttgttgcactaaagaaacaacca
tcatacattggaggacatgaaagtttagagttaagagattatcagctaaatggattgaat
tggcttgctcactcctggtgcaaagggaatagctgtattcttgcagatgaaatgggcctg
ggtaaaacaatacaaacaatttcttttctgaactacctgtttcacgaacatcagttgtat
ggccctttcttgctggttgtgccactttctaccttgacatcttggcaaagagagattcaa
acttgggctcctcagatgaatgctgtagtttacttaggagatataactagcagaaatatg
ataagaactcatgaatggatgcatccacagaccaaacgattaaaatttaacatacttcta
acaacatacgaaattttgctgaaggataagtcattccttggtggtctgaattgggcattc
ataggagttgatgaagctcatcgtttaaaaaatgatgactctcttctgtacaagacttta
attgactttaagtctaaccatcgtcttcttattactggaacgcctctgcaaaactccctc
aaagagctttggtctttgttgcacttcatcatgccagaaaagttttcctcctgggaagat
tttgaagaggagcatggcaaagggagagagtatggttatgcaagtcttcacaaagaactt
gaaccgtttctactgagaagagttaaaaaagatgtagaaaagtctttacctgctaaagtt
gagcaaattctgagaatggaaatgagtgcattgcagaagcaatattataagtggatttta
accaggaattataaagccctcagtaaaggttcaaaaggcagtacctcaggctttttgaac
ataatgatggaactcaagaagtgttgtaaccattgctacctcattaaaccaccagatgat
aatgaattctataataaacaggaggccttacagcatttaatacgtagcagcgggaaacta
atccttcttgacaagctactgattcgtctgcgagaacgtggcaacagagttctgattttc
tcacagatggtgaggatgctggacatcctagcagaatatctgaagtatcgtcagtttccc
tttcagagacttgatggatcaataaaaggagaattgaggaaacaagcactggatcatttt
aatgcagaaggatcagaggacttctgctttttactgtctaccagagctgggggattaggc
atcaacttggcatctgctgacactgtagttatatttgattctgactggaatccacagaat
gatctacaagcacaggctagagcgcataggattggacagaagaaacaggttaatatttat
cgactcgtcacaaaaggatccgtagaagaagatattcttgaaagagccaagaaaaagatg
gtgttagatcatttagtaattcagagaatggacactacagggaaaaccatactacataca
ggctctactccttcaagctcaacaccttttaataaggaggagttatcagcaattttaaag
tttggtgctgaggaactttttaaagaacctgaaggggaagaacaagagccccaggaaatg
gatatagatgaaatcttgaagagggcagaaactcgggaaaatgagccaggtccattaact
gtaggagatgagttgctttcacagttcaaggtggccaacttttccaacatggatgaagat
gatattgagttggaaccagaaagaaattcaagaaattgggaagaaataattccggaactc
cagcggcgtagaatagaagaggaggaaagacaaaaagaacttgaagaaatatatatgctc
ccaaggatgaggaactgtgcaaaacagatcagctttaatggaagtgaagggaggcgcagt
aggagcagaagatactctggatctgatagtgactccatctcagaaagaaaacggccgaaa
aaacgtggaagaccacgaactattcctcgagaaaatattaaaggatttagtgatgcagag
atcaggcggtttatcaagagttacaagaaatttggtggccctcttgaaaggttagatgct
gtagctagagatgctgagctagttgataaatcagagacagatctcagacgtttgggagag
cttgtacataatggatgcattaaagctttaaaggacaattcatctggacaagaaagagca
ggaggtagacttgggaaagttaaaggcccaacattccgaatctcaggagtgcaggtgaat
gcaaagctagtcatctctcatgaagaagagttggcaccattgcacaaatccattccttca
gatccagaagaaagaaaaagatacgtcatcccatgccacaccaaggctgctcattttgat
atagactggggtaaggaagatgattccaatctgttaataggcatctatgaatatggttat
ggcagctgggaaatgataaaaatggatcctgatctcagtttgacacagaaggttcttcac
ttgaagctgtctttccgtcacagcactggtgagcaacagattttgcctgatgatccagat
aagaaaccccaggcgaagcagttacaaactcgtgcagactacctcattaaattactgaat
aaagaccttgcaaggaaggaagcacaaaggcttgctggtgcaggcaactcaaagaggagg
aaagcaagaactaagaagaataaagtgacaaaggctgcaaaaataaaagaagaaataaaa
agtgattcttcaccgcaaccctcagaaaaatctgatgaagatgatgatgaggataacaag
gatgagattgtttcagtgaaacaaccacataaaaaaattaaagcagaaaaagaaaatgaa
gaaaagcctgagccagatattggtataaagaaggaagctgaagaaaaaagagagacaaaa
gaaaaggaaaataagagggatttgaaaagggagaaaaaagaaaaagaggataagaaagaa
ttaaaagaaaaagatattaaagaaaagagagaaaacaaagtaaaagaatccacacagaaa
gaaaaagaagtaaaggaagagaaggtaaatgaaatcaaatctgaaaataaagaaaaaact
aaaaaaatgccattgttggatactccagttcatattactgcaaccagtgaaccagttcct
atattggaagaatcagaagaactggatcagaaaacttttagcgtgtgcaaggaaagaatg
aggcctgtcaaagcagcattgaaacagctggaccgaccagagaagggcctttctgaaaga
gagcagctggaacatactagacagtgtcttatcaaaattggggatcacattactgaatgt
ctaaaggagtacacaaatcctgaacaaattaaacagtggagaaaaaacttgtggattttt
gtctctaagtttacagaatttgatgccagaaagctgcacaaactgtataaacatgcaatc
aaaaaacgccaagaatctcagcaacaaaatgaccagaatattagcagcaatgtgaataca
cacgtaattagaaatccagatgtggaaaggctgaaggagaatacaaaccatgatgacagt
agcagggacagttattcttctgatagacatttgtcacaataccacgatcatcataaagac
aggcatcagggagatgcttacaagaaaagtgactctaggaaaaggccctattcagccttc
agcaatggaaaagatcacagagactgggatcactacaaacaagacagcagatactacagt
gacagtaaacatagaaagttagatgactacaggagcagagaccacaggtcaaacctggaa
ggaagtttaaaagacagccgggctcattcagaccaccgttcccattcagaccacaggata
cattcagatcatcgttcctcttcagagtacagccatcataaatcttctagggattatagg
taccactcagactggcaaatggaccacagagcttcaggtagtggcccaaggtcaccatta
gatcagaggtctccttatggttcaagatctcccttaggacacagatctccatttgaacac
tcatcagatcacaaaagtacacctgaacatacatggagtagccggaaaacataa
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integrated database retrieval system
