Rissa tridactyla (black-legged kittiwake): 128903760
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Entry
128903760 CDS
T09443
Symbol
PCDH17
Name
(RefSeq) protocadherin-17 isoform X1
KO
K16499
protocadherin delta 2
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
rtd04515
]
128903760 (PCDH17)
Cell adhesion molecules [BR:
rtd04515
]
Cadherins
Protocadherins
128903760 (PCDH17)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
128903760
NCBI-ProteinID:
XP_054043665
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All DBs
Position
1:39246751..39388638
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AA seq
1205 aa
AA seq
DB search
MYLSICCFFLCWAPALSLKNLNYSVPEEQGAGTVIGNIGRDARLAAGAAGGGMLPAERGG
PGGGPGGGRGPKSTFRVLENSAPHLLDVDGESGLLYTKQRIDREALCRRSAKCQLSLEVF
ANDQEICMIKVEIQDLNDNAPAFPSDQVDMDISENAAPGTRFPLTSAHDPDAGDNGLRTY
LLTRDDYGLFSLDVKSRGDGTKFPELVIQKPLDREEQSHHTLVLTALDGGDPPRSGTVQI
NVRLIDSNDNSPVFEAASYVVELPENAPLGTAVIDLNATDADEGTNGEVLYSFSGYAPER
VRDLFSIDPQSGLIRVKGNLDYEESGLIEIDVQARDLGPNPIPAHCKVTVRLIDRNDNAP
TIGFVSVRQGALSEAAPPGTVIALVRVTDRDSGKNGQLQCRVLGGGSGPGAVPFTLEENY
DNFYTVVTDRPLDREAQDEYNVTIVARDGGNPPLNSTKSFSVRILDENDNPPRFSKNLYV
LQVPENNIPGEYLGSVLAQDPDLGQNGTVSYSILPGHVGDVSIYTYVSVNPTNGAIYALR
SFNYEQTKHFEFRVLAKDSGSPHRESNATVRVTVLDVNDNAPLIVLPALINDTAELQVPR
NAGVGYPVGTVRALDSDFGESGRLTYEIVEGNEEHLFEMDPTSGEIRTLHPYWEELSPVA
ELVVKVSDHGKPSLSAVAKLIVRALAGPLPEAGEPQVNGEQHRRPHWDLSLPLIVTLSTV
SIILLAAMITIAVKCKRENKEIRTYNCRIAEYSHPQLGGGGGSGGGGGGSGSGGGKGKKK
KISKNDIMLVPSEGEDSRGPLNVMNVVSSPSLATSPMYFDYQTRLPLSSPRSEVMYLKPA
SNNLTVPQGHVGCHTSFTGQGTNASEAPPSRMSIIQTDNFPAEPNYMGSRQQFVQSSSTF
KDPERASLRDSGHGDSDQADSDQDTNKGSCCDMSVREALKMKTTSTKSQPLEQEQQGRGQ
RPIVGICGPARCEDGKFSEQEECVNCTDECRVLGHSDRCWMPQFPAASQAENADYRTNLF
VPTVEANVETETYETVNPTGKKTFCTFGKDKREHTILIANVKPYLKAKRALSPLLQEVPS
ASSSPTKTCIEPCTSTKGPLDGCEVKSGALAEPSSQYLSTDSQYLSPSKQSKDAPFIASD
QMARAFADVHSRVSRDSSEMDSVLEQLDRSARDLGRESVDAEEVVREIDKLLQDCRGSDP
VAVRK
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atgtacctttccatttgttgcttcttcctctgctgggctcccgccctgtcgctgaagaac
ctgaattactcggtgccggaggagcagggagcgggcacggtcatcggcaacatcggccgc
gatgcgcggctggcggcgggcgcggcgggaggcgggatgctgcccgcggagcgcggcggc
cccggcggcggccccggcggtggccgcggccccaagtccaccttccgggtgctggagaac
tcggcccctcacctcctggacgtggacggggagagcgggctgctctacaccaagcagcgc
attgaccgtgaggcgctgtgccggcgcagcgccaagtgccagctgtccctcgaggtgttc
gccaacgaccaggagatctgcatgatcaaggtggagatccaagacctgaacgacaacgca
ccggcgttcccctctgaccaggtggacatggacatctcagaaaacgctgcgccgggcacc
cgcttccccctcaccagcgcccatgacccagacgctggggataatgggctgcgcacgtac
ctgcttacccgggatgactacggcctcttttccctcgatgtgaagtcccgtggtgatggc
acaaagtttccagagctggtcatccagaagccattagaccgtgaggagcagagccaccac
acccttgtgctgacggcactggacggcggcgacccaccacgttcgggcacagtgcagatc
aacgtgcgcctcattgactccaatgacaacagccctgtctttgaagcagcctcctacgtg
gtagagctgccagaaaatgcaccactgggcactgctgtcatcgaccttaatgccaccgat
gccgatgagggtaccaacggagaggtgctctactctttcagtggctacgcacccgagcgc
gtccgtgacctgttcagcatcgacccgcagagtggtctcatccgtgtcaagggcaacctg
gactatgaggagagtggcctcattgagattgatgtccaggctcgggacctggggcccaat
cccatccctgctcactgcaaggtcactgtccgcctcatcgaccgcaatgacaatgcaccc
accattggctttgtctccgttcgccagggagcactgagtgaggctgccccaccaggtacc
gtcattgccctggtgcgggtcaccgaccgtgactcaggcaagaacgggcagctccagtgt
cgggtgctgggcggtggcagcgggcccggagccgtccctttcaccctggaggagaactat
gacaatttctacactgtggtcactgacaggcccctggaccgtgaggcacaggatgagtac
aacgtgaccattgtggcacgtgacgggggcaaccctccactcaactccaccaagtcattt
tccgtccgcatcctcgatgagaatgacaacccaccccgcttcagcaagaacctctatgtg
ttacaggtgcccgagaacaatatccctggagagtacctgggctcagtcttggcccaggac
cccgacctgggccaaaatgggacagtctcttactccattctgcctgggcatgtaggtgat
gtctccatctacacctatgtctccgtcaaccctaccaatggtgctatctatgccctgagg
agcttcaactatgagcagacaaagcactttgagtttcgcgtgctggccaaagactcgggc
tcaccccaccgtgaaagtaatgccacggtacgtgtcactgtgctcgatgtcaatgacaat
gcacccctcatcgttctgcccgctctcatcaatgacaccgctgagctgcaggtgccacgc
aatgctggggtgggctaccccgtgggcaccgtccgtgccctggacagtgactttggggag
agtgggcgtctcacatatgagattgtggaaggcaatgaggagcacctctttgagatggac
cccactagcggtgagatacgcaccttgcacccctactgggaggagctcagccctgtggct
gaactggtggtaaaagtcagtgaccatggcaagcccagcctctctgcagtggccaaactc
attgtcagggccttggcggggcccctgcccgaggctggcgagccacaggtgaatggcgag
cagcatcggcgaccacactgggacttgtcactgcccctgatcgtgacgctgagcactgtc
tccatcatcctgctggctgccatgatcactattgctgtgaagtgcaagcgagagaacaag
gagatccgcacctataattgtcgcattgccgagtatagccaccctcagctgggaggaggg
ggaggcagtggcgggggaggaggaggcagtggcagtggagggggcaagggcaagaagaag
aagatcagcaagaatgacattatgctggtgcccagtgagggcgaggacagccggggcccc
ctcaatgtcatgaacgtggtgagcagcccatccctggccacctcacccatgtactttgac
taccagacccgcctgcccctcagctctcccaggtctgaggtgatgtacctgaagcccgcc
tccaacaacctgactgtaccccagggacatgtgggctgccacaccagcttcacagggcaa
gggactaacgccagcgaggctcccccgagccggatgtccataattcagacagacaatttt
cccgcagagcccaattacatgggcagcaggcagcagtttgttcaaagtagctccacgttc
aaggatccagaaagagccagcttgagggacagcgggcatggggacagtgatcaggctgac
agtgaccaagacactaacaaaggctcctgctgtgacatgtctgttagggaggcactcaag
atgaaaactacttcaactaaaagccagccacttgaacaagaacagcaaggcagaggccaa
agacccattgttgggatctgtggaccagcccgctgtgaggatggaaaattctcagagcaa
gaagaatgtgttaactgcacagatgaatgcagagtgcttggtcattctgacaggtgttgg
atgccacagttccctgcagccagtcaggctgagaatgcagattatcgcacaaatctcttt
gtacccacagttgaagctaatgttgagactgagacatatgaaactgtgaatcccactggg
aaaaagactttttgtacatttgggaaagacaagagagagcacactattctcattgccaat
gttaaaccttacttaaaagccaaacgtgccctgagtcctctgcttcaggaggttccctca
gcatcgagcagcccaaccaagacatgcattgagccttgcacctcaacaaaaggaccactg
gatggttgtgaagtgaaatcaggagccttggctgaaccaagcagccagtacttgtcaact
gacagtcagtatctatcgcctagtaaacagtcaaaagacgctcccttcattgcatcagat
cagatggctagggcctttgcagatgtgcattcccgagtgagtcgagactcgagtgagatg
gactctgttctggagcagttagaccgttcagcccgggatctaggtagggagtcggtggat
gccgaggaagttgtgagagaaatagacaagctcttgcaggactgtcggggaagcgaccct
gtggccgtcagaaagtga
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