Rissa tridactyla (black-legged kittiwake): 128903908
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Entry
128903908 CDS
T09443
Name
(RefSeq) LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 8-like
KO
K04494
chromodomain helicase DNA binding protein 8 [EC:5.6.2.-]
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
128903908
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rtd03036
]
128903908
Chromosome and associated proteins [BR:
rtd03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
128903908
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Helicase_C
Chromo
ResIII
DEAD
HTH_Hrp3
HDA2-3
MUN
Chromo_MIT1
Myb_DNA-bind_7
RNase_H2_suC
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
128903908
NCBI-ProteinID:
XP_054043770
LinkDB
All DBs
Position
Unknown
AA seq
1837 aa
AA seq
DB search
APVTVSSVPQVXVGGRRGGGQRLTVPLKVVLQPQAGSSQGGSPGLSVVKVLSSSEVAALT
TPSSRGPSEETRKLDHQKKQEKANRIVAEAIARARARGEQNIPRVLNEDELPSVRPEEEG
DRKRRRKGAGDRATPKEERPRKGKGQGGGGKSKGRSKPSTITPVVGKKRKRNASSDNSDA
EVVPAPSPREEEETSVQKRRSNRQVKRKKYTEDLDIKITDDEEDEELDVTGPVRPEQPPV
SQPPVPEPEPEGETLPSMQFFVENPSEEDAAIVDKVLSMRVVKKELPSGQLTESEEFFVK
YKNYSYLHCEWATIDQLEKDKRIHQKLKRFKTKMTQMRHFFHEDEEPFNPDYVEVDRILD
ESHSVDKDNGEPVVYYLVKWCSLPYEDSTWELKEDVDEGKIGEFKRIQARHPELKRLPRP
QAGSWKKLELSHEYKNGNRLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQ
EVYNVGVRGPFLVIAPLSTITNWEREFNTWTEMNSIVYHGSLASRQMIQQYEMYCKDSRG
RLIPGAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEH
KVLLTGTPLQNTVEELFSLLHFLEPSQFPSEAEFLKDFGDLKTEEQVQKLQAILKPMMLR
RLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGHTNMPNLLNTMMEL
RKCCNHPYLINGAEEKILAEFRESCHHHVPPDFHLQAMVRSAGKLVLIDKLLPKLKAGGH
KVLIFSQMVRCLDILEDYLIQKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTR
AGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDK
ASLKLGLDKAVLQSMSGREGNIAGIQQFSKKEIEDLLRKGAYAAIMEEDDEGSKFCEEDI
DQILLRRTTTITIESEGKGSTFAKASFVASENRTDIALDDPNFWQKWAKKADLDLELLNS
KNNLVIDTPRVRKQTRHFSTLRDDDLVEFSDLESEDEEKPRSRRHERHHHHPPHHHHQPH
HHHHPHQQQPHQQSLHHPYGRTDCFRVEKHLLVYGWGRWREILTHGRFKRRLSERDVETI
CRTILVYCLLHYRGDENIKSFIWDLISPTENGKTKELQNHSGLSIPVPRGRKGKKVKAQN
SFDLQKAEWIRRYDPDALFQDESYKKHLKHQCNKVLLRVRMLYYLRQEVIGEQAEKVLAG
GGGQVSEIDIWFPLVEQLEVPTSWWDAEADKSLLIGVFKHGYEKYNTMRADPALCFLEKA
GRPDDKAVAAEQRPDAGEGVDFEKECEDPEYRPLPGGGKDVDEEGDPLMLLDEEISVVDG
DEARPTALLAPASVLTSRLRRLVAACQRSCRRRPPPPEPAEPRGERRRRRCEATCKLKEM
ARREKQQRWTRREQADFYRVASTFGVEFDPDAGRFRWGRFRTLARLEKKTDENLTKFFHG
FVAMCRQVCRLPPAPGDEPPDPSLAVAPVSPARASRGLRRLSLLRLLREQVLRHPLLLPR
LALCPPPGPDLPPWWQRGHHDAELLRGAARHGLGPPPGALLADPDFSFAAARWRYLRGRH
AEAAAAPGARNVVLGTEEEEEEEEDEEEEDEEEEEEEEEEEKTSGSESSSCRRRARRRGV
RPRPAGRGRSRGRSRPPHPWGGGGVAGGGSPPAAPPLPPPAPPHLHEWPKERALIRRLDL
VCRAVLSGEWPPEDFGGGTTTTGGGGGGGGTPPAAVLVPPPAGGGRRKSPPRTPEPCPEK
EFTVQIKDEEGLKLTFQKQRLVANGAPPKKNSKKLVE
NT seq
5513 nt
NT seq
+upstream
nt +downstream
nt
gggcccccgtcaccgtgtcctcggtgccccaggtgnnggtgggggggcggcggggcggcg
gccagaggttgacggtgcccttgaaggtggtcctccaacctcaggccggctcatctcagg
ggggttccccgggcctctcggtggtgaaggtcctcagcagcagcgaggtggccgctttga
ccaccccttcgtcccgcggcccttcggaagaaacgcggaaattggaccatcagaagaaac
aggagaaagccaaccggatcgtcgccgaagccatcgctcgggcccgggcccggggggagc
agaacatccctcgggtcctcaacgaggacgagttgcccagcgtccgtcccgaggaagagg
gcgaccggaaacgtcgtcgcaagggggcgggtgacagggccacgcccaaagaggagagac
ctcggaagggcaaaggtcaaggcggaggcgggaaaagcaaagggcggagcaaacccagca
ccatcaccccggtggtggggaagaaacgcaagcgcaacgcttcctccgacaactcggacg
ccgaggtcgtgccggccccgtccccccgggaggaagaagaaaccagcgtccagaagcgac
gttccaaccggcaagtcaaacgcaagaaatacacggaagatttggacatcaagatcaccg
acgacgaggaagacgaagagttggacgtcacgggacccgttcgccccgaacaaccgcccg
tatcccaacctcccgtcccggagccggaaccggaaggcgagacgttgccttccatgcaat
tttttgtggagaaccccagcgaggaagacgccgccatcgtggacaaggtcctctccatga
gggtggtgaagaaagagcttccgtcggggcagttgacggaatcggaagagtttttcgtca
agtacaagaactactcctacctccactgcgagtgggccaccatcgaccagctggagaagg
acaagaggatccaccagaagctgaagcggttcaagaccaagatgacccagatgcgccatt
ttttccacgaggacgaagaacccttcaaccccgactacgtagaggtggaccgcatcctgg
acgagtcccacagcgtcgataaggacaacggggagcccgtggtctactacctggtcaagt
ggtgctccctcccctacgaggacagcacctgggagctcaaagaagacgtcgacgaaggga
aaatcggcgaattcaagaggatccaagcccggcacccggagctcaaacgtttgccccgtc
ctcaagccggttcctggaagaaactggagctctcccacgagtacaagaacggcaaccgcc
tgcgggaataccagctggaaggggtcaactggctgctcttcaactggtacaacaggcaga
actgcatcttggccgacgagatggggttggggaagaccatccaatccatcgcgttcctgc
aagaggtctacaacgtcggggtgaggggccctttcctggtcatcgccccgctctccacca
tcaccaactgggagagggagttcaacacctggacggagatgaacagcatcgtctaccacg
gcagcttggcctcccgccagatgatccagcagtacgagatgtactgcaaagactcccggg
gtcgcctcatccccggcgcttacaaattcgacgccctcatcaccaccttcgagatgatcc
tctccgactgccccgagctgcgggagatcgagtggcgctgcgtcatcatcgacgaggccc
accgcctgaagaaccgcaactgcaagctcctcgacagcctcaagcacatggatctggaac
acaaggtcctcttgacgggcaccccgctccagaacacggtggaggagctcttcagcctcc
tccacttcctggaaccttcccagttcccttccgaagccgaattcctcaaggattttgggg
acctcaagacggaggagcaggtgcagaagctccaggccatcttgaagcccatgatgctcc
gtcggttgaaggaagacgtggagaagaacttggcccccaagcaggagaccatcatcgagg
tggagttgaccaacatccagaagaaatattaccgggccatcttggagaagaacttctcct
tcctttccaaaggagctggtcacaccaacatgcccaaccttctcaacaccatgatggaac
ttcgcaagtgttgcaaccacccctacctcatcaacggcgcggaggagaagatcctggcgg
aattccgcgagtcctgccaccaccacgtcccccccgacttccacctgcaggccatggtcc
gctcggccggcaaactggtcctcatcgacaagctcctgcccaaactcaaagccggcggcc
acaaggtcctcatcttctcccagatggtgcggtgcctcgacatcttggaggactacctca
tccagaagaggtacctctacgagcgcatcgacgggagggtgcggggcaacctgcggcagg
cggccatcgaccgcttcagcaaacccgactccgaccgtttcgtcttcctcctctgcaccc
gggccggcgggttgggcatcaacctcaccgccgccgacacctgcatcatcttcgactccg
actggaacccccaaaacgatctccaggctcaggcgcggtgtcaccgcatcgggcagagca
aagcggtgaaggtctaccgcctcatcacccgcaactcctacgagagggagatgttcgaca
aggccagcctcaagttgggcttggacaaggccgtcctgcagtccatgagcggccgggagg
gcaacatcgcggggatccaacagttctccaagaaggagatcgaggacctgctgcgcaaag
gggcctacgccgccatcatggaagaggacgacgaaggttccaagttctgcgaggaggaca
tcgaccagatcctcctgcgccgcaccaccaccatcaccatcgagagcgagggcaagggct
ccaccttcgccaaggccagtttcgtggcttcggaaaaccgcacggacatcgctttggacg
accccaacttttggcagaaatgggccaaaaaagccgacttggacctggagctcctcaaca
gcaagaacaacctagtgatcgacacgccgcgggtgaggaagcagacgaggcacttcagca
ccctccgggacgacgacctggtggagttttccgacctggagagcgaagacgaggagaaac
ccaggtcccggcgccacgagaggcaccaccaccaccccccccaccaccaccaccagcccc
accaccaccaccacccccaccagcagcagccccaccagcagagcctgcaccacccttacg
ggcggaccgactgcttccgggtggagaaacatctcctggtctacgggtggggccgttggc
gggagatcttgacccacggccgtttcaaacgccgcctttcggaacgggacgtggagacca
tctgccggaccatcttggtgtattgtcttctccattaccggggcgacgagaacatcaaga
gcttcatctgggacctcatcagccctacggaaaacggcaagaccaaggagctccagaacc
actccgggctttccatcccggttcctcgaggccggaaggggaagaaagtgaaagcgcaga
attccttcgatctccaaaaagccgagtggatccggagatacgaccccgacgccctcttcc
aggacgagagctacaagaagcacctcaaacaccagtgcaacaaggtcctgctgagggtgc
ggatgctctactacctgcggcaggaggtcatcggggaacaggcggagaaggtcctggcgg
ggggcggtggccaggtgagcgagatcgacatctggttccccttggtggaacagctggagg
tccccacctcctggtgggacgccgaagccgacaaatccctcctcatcggggtcttcaaac
acggctacgagaagtacaacaccatgagggccgaccccgcgctctgcttcctggagaagg
ccggtcgccccgacgacaaggccgtggccgccgagcagcgcccggacgccggcgaggggg
tggatttcgaaaaagagtgcgaggaccccgaataccggcccctgccgggggggggcaaag
acgtggacgaagagggcgaccccttgatgctgctggacgaggagatttcggtggtggacg
gggacgaagcccggccaacagccctcctggccccggcctcggtgctgacctcccgcctgc
gtcgcctggtggccgcttgccagaggtcctgccgccgccggcccccgcccccggaacccg
ccgagccccggggcgagaggcgccggcgccgctgcgaggccacctgcaagctgaaggaga
tggcccgcagggagaaacagcagcggtggacccgtcgagagcaagcggatttctatcgcg
tggcttcgactttcggggtggaattcgatcccgacgccggaaggttccgttggggtcggt
tccggactttggccaggttggagaagaagacggacgagaacctcaccaagttcttccacg
gtttcgtcgccatgtgccggcaggtttgccgcctgccccccgccccgggagacgagcccc
ccgacccgtcgctggcggtggcccccgtctctccggcccgggcctcgcggggtttgcgtc
gcctctcgctgctgcgcctgctgcgggagcaggtcctgcgtcacccgctgctgctgccgc
gcctggccctgtgtcccccgccggggcccgacctgccgccctggtggcagcggggtcacc
acgacgccgagctgctgcggggggcggcgcggcacggcctggggcccccccccggcgccc
tcctggccgaccccgacttctccttcgccgccgcccgatggaggtacctgaggggtcgcc
acgccgaggccgccgccgctcccggcgcccggaacgtcgtcctcggcacggaggaggagg
aggaggaggaggaggacgaggaggaggaggacgaggaggaagaggaggaggaggaggagg
aggagaagacgtcgggcagcgagtcctcgtcctgccggaggagagcgaggaggagagggg
tgcggccccgccctgcggggagggggaggagtcgcgggaggagtcgccccccccatccgt
gggggggggggggggtcgcggggggggggtcgccccccgccgccccccccctcccccccc
cggcccccccccacctgcacgagtggcccaaggagcgggccctgatccgtcggctggacc
tggtgtgccgagccgtgctgtcgggagagtggcccccggaagatttcgggggggggacaa
cgacaacgggggggggcggcggcgggggggggacaccccccgccgccgtcctcgtccccc
ccccggcgggggggggccgtcggaaaagccccccccgtacccccgagccctgccccgaga
aagaattcaccgtccagattaaagacgaggagggcttgaagctgaccttccagaagcagc
ggctggtggccaacggggcccccccgaaaaaaaacagcaagaaattggtggag
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integrated database retrieval system
