Rissa tridactyla (black-legged kittiwake): 128904130
Help
Entry
128904130 CDS
T09443
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128904130 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtd03021
]
128904130 (PCF11)
03019 Messenger RNA biogenesis [BR:
rtd03019
]
128904130 (PCF11)
Transcription machinery [BR:
rtd03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
128904130 (PCF11)
Messenger RNA biogenesis [BR:
rtd03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
128904130 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
DNA_pol3_a_NI
DUF6980
Motif
Other DBs
NCBI-GeneID:
128904130
NCBI-ProteinID:
XP_054044008
LinkDB
All DBs
Position
1:1974753..1996626
Genome browser
AA seq
1707 aa
AA seq
DB search
MSAPEGSAGSSEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEAQ
IAKAPASEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRST
WDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESTAPTSAVT
SGASTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQ
GSSTIASVPAPSKQHMSPTPHMTVKPPHQTAVQSEKNKPSPSPPLHDMKIVNRDPRLNRM
AQHSSHAKDQSHRKEFPPNATSQSDTKANKTTQAEKQNSTKQEKLKASEKTQKKELDQSE
AKSKSPSPLKNKLPNTKDSKIQECESTKVSDISKRDPRLKRHLQDKSEGKEEEVKEKRRC
TEKKEKEEHKTSEHRPVGSRNKVINGAVQKQDATTEESEKQSGKQGRSSNRKRSRSRSPK
ARSPSTHSPKRRERRSPKRRLRSLSPTSSAPKIAKIRQTGPKQSHVEEGTQAARDERNSN
KRNAKQEVRDPRRVKKAQEDRPQETASQHSTKASPDPKENAENWQGSKSGKRWKSGWEEN
KNSQQNEEHQALGKSPHQRHRENWPAGKGILSPRAPKQQHRLSVDANLQIPKELTSASKR
ELLKKANERLTSGEITQDEFLMVAHQIRQLFQYQEGKHRCNVWDSPTEEKCGMKKKPLLS
DAELTYYEHKAKLKRTQVQHSLSRLDLLDPDDILDYHLPDSLLSGIECEQGKAKRGVQFD
RKEPFGERSRRHSPVSGTNRPFADNLSPLESRRRLEEQNATKGARGSKNFDPYDSWGESD
EFRDALRQQGKSTTEFQKIDGDAICRFDNREERQLLGQAGVREEPRSPFTERFKRARYED
PEKAPFPESPGSRFGGIEAKQRISALMEDRPLFDGSPRPAAARVGVDGQGSPFVDGPAAG
SSSRIDGPPGQAAMRFEGPLVGAGAAQFDGPLAGAGAAGALRFDGPPGQLAGALRFEGPP
GQVGGGGPLRFEGPLGQIGGPLRFDGPAGQPVGGPRFEGPGVGLRFEGPRGQPSGGLRFE
GPHGQPMGPRGQPGGGLRFEGPHGQPLGPHGQPGGGLRFEGPHLQPLGPHGQHGGGLRFE
GPHGQPMGPHGPSGGGLRFEGPHGPSGGGLRLEGPHGQPGVGPRLIDGPVHQGAGGLRFD
GPLGRAGPRFDGCHAAGFDGQPGQLSLLQRFDGIHGQPGPRFERAPGQQAQPRFDTAIPQ
RFDGPHQPASRFDLPLGLQGARFENVANHPASRLEMSPYGQGGPFVEQGYNGPSHGMQFQ
RPDLFDGSPGPNFNGPAGPGAQNFPLRAAGHYFDEKGLQGPQYGNFNNMPMGSNQVSLMS
AQPGPYGQGQQYLPNPGSFVQNPAGALPHSYPDNHLGQVDVNELFAKLLKTGILKLSKTD
ATSAQVNDTSAQPAAEEEDDDQNEDQNVPDLTNFTVEELRQRYDSVINRLYTGIQCYSCG
MRFTTSQTDVYADHLDWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERAKSQ
FFEKAHEEVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAI
RVDEKIYHPSCYEDYQNTSSFDCTPSPSKTPVENPLNIMLNIVKQETQESCDSPPKIKEE
PDDTPTACAEESAPASTDIKTEPDESV
NT seq
5124 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccccggagggcagcgctggtagcagcgaggcccgggaggacgcgtgccgcgat
taccagtcgtcgctggaggacctgacgttcaacagcaagccgcacatcaacatgctgacc
atcctggccgaggagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcgcaa
atcgccaaggctcctgcatcagagaagctccctgttatgtaccttatggattccattgtc
aagaatgtgggaagagaatatcttactgcatttactaaaaacctagttgcaacatttatt
tgtgtatttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctccaca
tgggatgatatttttcctttgaagaaactgtatgcacttgatgtcagagtcaactcatta
gatcctgcttggccaattaaacctctgcccccaaatgtgaatacttctagcatccatgtg
aatcctaaatttttaaataaatcgccagaggaatctactgcacctacctctgctgtcact
tctggtgcctctactcctccagctgttcctgaaatacaaaagaatttgacacaggagcaa
ctgataaggcagcaattacttgcaaagcaaaagcagttgttagaacttcagcaaaaaaaa
ttagagttggagctggagcagactaaagcacagttggccgtatctcttagtgttcagcaa
gggtcatctactatagcttcagttccagcaccttccaagcaacacatgtctcccacacct
cacatgacagttaaaccacctcatcagactgctgtgcaatccgaaaaaaacaaaccatcc
ccaagtcctccacttcatgatatgaaaatagtaaatagggatcctcgacttaatcggatg
gctcaacattcttcccatgctaaagatcaatctcataggaaagaatttccaccaaacgca
accagtcagtctgataccaaggcaaacaaaacaacacaggctgaaaagcaaaactcaaca
aagcaagaaaaattgaaagcaagtgaaaaaacacagaagaaagaacttgaccagtcagaa
gcaaaatctaaatcaccatcccctttgaaaaataagctacccaatactaaagatagtaaa
atccaggaatgtgaaagcacaaaagtgtctgacattagtaagcgggatccaagactgaaa
agacatcttcaagataagtcagagggcaaagaggaagaggtgaaagaaaagaggagatgt
acagagaaaaaagaaaaagaggaacataagacatctgaacatagaccagtaggcagcaga
aataaagtaatcaatggtgctgttcagaaacaagatgcgactacagaggagtcagagaaa
cagagtggaaaacaagggagatcaagtaatagaaaacggtcacgatcacgctctcctaag
gcacggtcgccatctacacattctccaaaaagacgagagaggagatcgcccaaaagaaga
cttaggagtttatctcccacttcatcagctcctaaaattgcaaagatacgtcagacaggc
cctaagcaatctcatgttgaagaaggcacacaagcagcaagagatgaaagaaattctaat
aagagaaatgctaaacaagaggtgcgagatccaaggagagtgaaaaaagcccaagaagac
agaccccaagaaacagcaagccagcattctacaaaagcttctcctgatccaaaggagaat
gcagaaaactggcaaggatccaaatcaggcaagaggtggaaatctggttgggaagaaaat
aaaaactcacagcagaacgaagaacaccaagcgcttggtaaatcccctcaccaaagacac
cgggaaaactggcctgctggtaaagggattttatcaccccgagcaccaaagcagcagcac
cggttaagtgtggatgctaatttacagattcccaaagaactgacatctgcaagcaagaga
gaattacttaagaaggccaatgaacgcttaacatctggtgaaataacacaagatgagttc
ctcatggtagctcatcagatacgacagctgttccagtatcaggaaggaaagcacagatgt
aatgtctgggatagccctacagaggaaaaatgtggtatgaaaaagaaacctcttctatcg
gatgcagaattaacatactatgaacataaggctaaactaaaaagaacacaagttcagcat
tcattgtcaaggcttgatctgttggatcctgatgatattttggattatcatttgcctgat
tcattgctttctggaatagaatgtgagcaaggaaaagccaaacgtggagtacagtttgac
agaaaagaaccatttggagaaagatctaggagacattctcctgtaagtggcactaacaga
ccttttgctgataacctctcaccacttgagagtcggcgaagacttgaggaacaaaatgct
accaaaggagcaagaggttctaagaacttcgatccttatgacagctggggagaatcagat
gaatttagagatgctctcagacaacaggggaaaagcacaacagagttccagaaaatagat
ggtgacgcaatctgcagatttgataatcgtgaagaaagacagcttcttgggcaagctggt
gttcgagaggaaccaagatcaccattcactgaacgtttcaaaagagctaggtatgaagat
ccggagaaagcaccgtttccggaaagcccaggatcaagatttggaggcattgaagcaaag
cagaggataagcgcactaatggaagacagacctctatttgatggctcacccagaccggct
gctgcaagggttggggtagatggacaaggaagtccttttgttgatggtcctgctgctggc
tcaagttcccgaattgatgggccacctggacaggctgcaatgagatttgaggggcctttg
gtgggggcgggtgcagctcagtttgatggaccgttggcaggagcaggggcagctggagcc
ctgagatttgatgggccaccagggcagctggcaggggccctgaggtttgaaggaccccca
ggacaggttggtggaggaggtccactgaggtttgagggacctcttgggcagataggtggg
cctctgcggtttgacgggcctgcagggcagcctgtaggtggtcctagatttgaaggacct
ggagttggtctcaggtttgagggtccccgtggtcagccttcaggtggtctcaggtttgag
ggacctcatggtcaacctatggggcctcgaggtcaaccagggggtggtctcaggtttgag
ggaccccatggtcagcccttggggcctcatggtcaaccagggggtggcctcaggtttgag
ggaccacatttacagccattggggccccatggtcaacatggaggtggcctcagatttgag
gggcctcatggtcagccaatggggccacatgggccatcaggtggtgggctcagatttgag
gggccacatggaccttcaggtggtgggctcagattggaaggaccgcatggtcagccaggt
gtaggtcctcggttgattgatggaccagtacaccagggagctggtggacttagatttgat
ggtcctctgggtcgggccggtccaagattcgatggttgtcatgcagctggatttgatggt
cagcctggacagctatctcttttgcaaagatttgatggaattcacggacagcctggtcca
agatttgaaagggcgcctggccaacaggcccaaccacgatttgatacagccatacctcaa
agatttgatggacctcaccagccagcctctagatttgacttgccccttggccttcaaggt
gcacgtttcgaaaatgtagctaaccatcctgcctcaagactagaaatgtcaccatacgga
caaggtggcccgtttgtcgaacagggctacaatggaccgtctcatgggatgcagttccag
aggcctgatctatttgatggttcacctggaccaaatttcaatgggccagctggcccagga
gcacagaatttcccactgagagcagctggacattactttgatgaaaaaggtcttcagggt
cctcaatatgggaacttcaataacatgccaatgggaagtaatcaggtttctctcatgtct
gctcaaccagggccttatggccaaggtcaacagtatttgccaaatcctggaagttttgtt
cagaaccctgcaggagcccttccacattcatatcctgataaccacctcgggcaggtcgat
gtcaatgagttgtttgctaaactgctgaaaacagggatcctcaaactgtcaaaaactgat
gccacttcagcacaagtgaatgacacatcagcccaaccagctgctgaagaggaagatgat
gaccagaatgaagatcaaaatgtcccagacctcactaacttcacagttgaagaactcaga
cagcgttatgatagtgtaataaatcgattgtacactggaattcagtgttactcatgtgga
atgagattcactacttcacagacagatgtttatgcggatcatttagattggcattatcgt
cagaaccggacagaaaaagatgttagcagaaaaattacacacagaagatggtactacagt
ttaacggactggattgaatttgaagaaatagccgacctagaggagcgtgcaaaaagccag
ttttttgaaaaagctcacgaagaggttgtgttgaagacacaagaggctgcaaaagagaag
gagtttcagagtgtccctgctggaccggctggagcagttgagagctgtgaaatttgccaa
gagcaatttgaacagtattgggatgaggaagaggaagagtggcacctgaagaatgctatc
agagtagatgaaaagatttaccatccatcttgctatgaagattaccaaaacacatcatca
tttgattgcacaccatctcccagcaagactcctgtggaaaatccactaaatataatgttg
aacattgttaaacaagaaacacaggagtcctgtgactcaccacctaaaatcaaagaagaa
cctgatgacacccctactgcctgtgcagaagagagcgcacctgcatctacagatattaaa
acagagcctgatgagtctgtttaa
DBGET
integrated database retrieval system
