Rissa tridactyla (black-legged kittiwake): 128904150
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Entry
128904150 CDS
T09443
Symbol
SCAF4
Name
(RefSeq) SR-related and CTD-associated factor 4 isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtd03021
]
128904150 (SCAF4)
03041 Spliceosome [BR:
rtd03041
]
128904150 (SCAF4)
Transcription machinery [BR:
rtd03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
128904150 (SCAF4)
Spliceosome [BR:
rtd03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
128904150 (SCAF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
128904150
NCBI-ProteinID:
XP_054044067
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All DBs
Position
1:104620328..104665999
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AA seq
1103 aa
AA seq
DB search
MEAVNAFNQELFSLMEMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKV
PGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKN
GVFKIEIIQPLLDMAAGTSATAPMTENATNNEGSPPPPAKVSSEPPQVTANSVPTVPQLP
SSDAFAAVAQLFQTTQGQQLQQILQTFQQPQKPQSPVIDNTVMAQVQAITAQLKTTAAQP
QEQKAAFPPPEQKTSFDKKLLDRFDYDDEPEAVEDSKKEDSAPSPSVSQPALTSLSFSAQ
AGWCSIPGGFPGEGMQQPVFPQLPNMDPFQQRMMGIQQDPMRHQVPLPPNGQMPGFGLLP
TPQFPPMAQPVIPPAAPVQQTFQSPFPVQSESHMQKPHQQVRTPCSKQTNDMEVEQPPIQ
EGKRHVSDSRKSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPKSRSQERR
ERERERERRSKGLPQIKSETVSVCSTTLWVGQLDKRTTQQDVGSLLEEFGPIESINMIPP
RGCAYIVMVHRQDAYRALQKLSRGNFKVNQKSIKIAWALNKGIKPDYKQYWDVELGVTYI
PWDKVKPEDLESFCEGGMLDNETLSPEWKGIPKKSENEVAQNGGAEAAHNEPVSPIPKAL
PVPIPVPMPAPITVPPPQVPPHPSGPPVVGALQPPAFTAPLGIPPPGFAPGVPPPPPPPF
LRPGFNPMHLPPGFLPPGPPPPITPPVSVPHTPAVNIPNSTATGVNEDTTKDSSVGNPIP
TVVSGSRGSAETTDSSKIYGTVPPPVAPTNVPAPVTQTIPLLGTQGVAPPPPAPVVGLQT
PSTGLLGARPGLIPLQRPPGMPPPPLQRFPLMPPRHMPPHMMHRGPPPGPGGFGMPPPHG
MKTPFPPPGHFVRPGGMPGSGGPGGPEDNRDGRQFNRNDRQTFTPNRDQERYGRRSFGNR
VENDRERYGNRNDDRDHERLSNRDRRDWGRRSPERDRHRDLEDRNRRSSGHRDRERDSRD
RESRRDKEENRGKEKAELTDRADGDKNHESHSGKMEDADIVSDLPAGESEPTGVKPVEEL
PSEATSSVEQAEKEMGSVAEAPR
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtgaacgccttcaaccaggagctcttttcactgatggagatgaaacctcct
atttcccgagcaaaaatgattctcatcacaaaagctgccattaaagctattaagctctac
aagcatgtcgtccagattgtagagaagtttatcaaaaagtgcaaaccggaatataaagtc
cctggattgtacgttattgactctattgttcgtcaatctcgtcaccaatttggaacggac
aaagatgtttttgggccaagattctctaaaaatattactgccacattccagtatttgtat
ctctgtccatctgaagacaagagtaaaatagtccgtgtcctgaacctttggcagaaaaat
ggagtatttaaaattgaaataattcaaccccttctggatatggcagcaggaactagtgcc
actgcaccaatgacagaaaatgctactaataatgaaggttcaccgccccctccagcaaag
gtttcttcggagccccctcaagttactgctaactcagtacctactgtgccacagttgccc
agttctgatgcctttgcagctgtagctcagttgtttcaaacaacgcaaggacaacagctt
cagcaaattcttcagacttttcaacagcctcaaaaaccccagtcaccggtcatagataac
actgtgatggctcaggttcaagctattactgctcagttgaaaactacagcagcacaacca
caggaacaaaaagctgctttccctccgcctgagcaaaaaacgtcatttgacaaaaagctg
ctagatcggtttgactatgatgatgaaccagaagcagtggaagattcaaagaaagaagat
tcagctccttctccttcagtttctcagccagctttgacctctctctcattcagtgcacag
gctggatggtgctcaatacctggtggatttccaggagaaggtatgcaacagccagtattt
cctcaactcccaaatatggatccttttcagcagcgaatgatgggaatacaacaggatcca
atgcgtcaccaggttccgcttcctcctaatgggcaaatgccaggttttggtcttctgcct
accccgcagtttccacccatggctcagcctgtgattccaccagcagcacctgtgcagcaa
acttttcagtctccttttccagtacagagtgaatcacacatgcaaaaaccacatcagcag
gtgaggaccccttgcagtaaacaaactaacgatatggaagtggaacagccacctattcaa
gaggggaagcggcatgtttctgacagcagaaagtcaagatctagatctgcatcaaggtca
cctaaaaggagacgttcaagatcaggctcccgatctcgaagatcacgtcatcgtcgatct
cgatctcggtccagggatagacgccgacactctcctaagtctcggtcacaagaaagacgt
gaacgtgagagggagagggaacgcaggtcaaaaggtcttcctcagatcaagtcagaaacc
gttagtgtttgtagtactacgctttgggtaggacaacttgacaaaaggacaactcaacag
gatgttggaagtcttttggaggagtttggcccaattgaatcaataaatatgataccgcct
agaggatgtgcctatattgttatggttcacagacaagatgcttaccgtgccctgcaaaaa
ctgagccgaggaaacttcaaagtcaatcagaaatctataaagattgcatgggctttgaat
aaaggaataaagccagattacaagcagtattgggatgtagaattaggtgttacttacata
ccatgggacaaagtaaaacctgaagatcttgaaagtttctgtgaaggaggaatgttggac
aacgaaactcttagtccagagtggaaggggattcccaagaagtctgaaaatgaagtagct
caaaatggaggtgcagaagctgcgcataatgaaccagtgtcacctatacctaaagcttta
cctgttccaattcccgttcccatgcctgcaccaataacagtacctcctccacaggttcca
ccacatccctcaggtcctcctgtggttggtgcactccaaccacctgctttcacagcacct
ttaggaatcccacctcctggatttgctcctggagtgccaccgccgccgccacctccgttt
ttacgacctggtttcaacccaatgcatttacccccaggcttccttcctcctgggccacca
ccacctataactcctccagtatctgttcctcacactccggcagtaaacatcccaaactct
acagcaactggcgtgaatgaagacactacgaaagattcatccgtaggaaatcccatccca
acagtggtttctggatccagagggagtgctgaaactaccgatagttccaaaatatatggg
actgttccacctcctgtagcacctactaatgtacctgctcctgtcacccaaactattcca
cttcttggcactcaaggagttgcgcccccgccgccagcccccgttgttggtttgcagact
ccatccaccggcctcttgggtgcccggcctggtttgataccgctccagcgaccgccggga
atgccgccccctcccctgcagcgctttcccctgatgccaccgcgacacatgcctccccac
atgatgcacagagggcccccgccgggaccggggggctttgggatgcctcccccccacgga
atgaaaacccccttcccaccgccgggtcactttgtgagacccggggggatgccgggaagc
ggggggccgggcggacctgaggataacagagatgggaggcagtttaacaggaacgacagg
cagacgttcacgcctaacagagaccaggaaaggtacggaaggagatctttcggaaatcgg
gtagaaaatgatcgcgagcgctacggtaaccgcaacgacgacagagatcacgaacgactc
agtaatcgtgacaggcgagactggggacgaagaagccccgagcgtgaccgacacagagac
ttggaggacagaaacaggcggtccagtggccatcgagaccgagagagagattcgcgagac
agggagtctcgtagggacaaggaagaaaaccgaggcaaggaaaaagcggagctgacagac
agggcagatggcgacaaaaaccatgaatcgcacagcggcaaaatggaggacgcagacatt
gtttcagaccttcctgccggagagtctgaaccaacaggtgtgaaacctgtggaagagtta
ccatccgaggctacctcatctgtggaacaggcggaaaaggagatgggctcagtggcggag
gctcctcgctag
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