Rissa tridactyla (black-legged kittiwake): 128905012
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Entry
128905012 CDS
T09443
Symbol
SMARCC1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
128905012 (SMARCC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtd03021
]
128905012 (SMARCC1)
03036 Chromosome and associated proteins [BR:
rtd03036
]
128905012 (SMARCC1)
Transcription machinery [BR:
rtd03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
128905012 (SMARCC1)
Chromosome and associated proteins [BR:
rtd03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
128905012 (SMARCC1)
PBAF complex
128905012 (SMARCC1)
GBAF(ncBAF) complex
128905012 (SMARCC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
BRCT_2
DUF919
SpeFL
Motif
Other DBs
NCBI-GeneID:
128905012
NCBI-ProteinID:
XP_054046288
LinkDB
All DBs
Position
2:complement(167220638..167317908)
Genome browser
AA seq
1133 aa
AA seq
DB search
MRGVRRVGGAGPRWRRSARVTMAAAVAAAGGGTGAGPGGAAAAAAAAAGAVAVSGGAGCA
ALSVSRRKDGGPTGKFWESPETVSQLDSVRVWLGKHYKKYVQADAPTNKTLAGLVVQLLQ
FQEDAFGKHVTNPAFTKLPAKCFMDFKAGGTLCHILGAAYKYKNEQGWRRFDLQNPSRMD
RNVEMFMNIEKTLVQNNCLSRPTIYLIPDIELKLANKLKDIVKRHQGTVTEEKSKATHHV
YPSPTSMDDDEWLRPVMKKDKQVLVHWGYFPDSYDTWVHANEIDAEIEDPPIPEKPWKVH
AKWILDTDVFNEWMNEEDYEVDENRKTVSFRQRISMKNEEPVRSPERRDRKAAASTRKRK
HSPSPPPTPVESRKKTGKKGQAALYGKRRGQKEEDEQEDLTKDMEDPTPVPNIEEVVLPK
NVNPKKDSENTPVKGGTVADLDEQDEETVATGGKEDEDPNKGDQSRSVDPGEDNVTEQTN
HIIIPSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLT
STACRRNLTGDVCAVMRVHAFLEQWGLINYQVDPESRPMAMGPPPTPHFNVLADTPSGLM
PLHIRTPQVPAAQQMLSFPEKNKEKPTDLQNFGLRTDIYSKKTLAKSKGASAGREWTEQE
TLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSDASLGPLAYQPVP
FSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFSRVREEVPLELVEAHVKKVQEAARA
SGKVDPTYGLESSCIAGTGPDEPEKIDGAEEEKMETETDGQQSEKVENKAESEIEEGDKV
QEGENERNPEKEQDSEVTAEPKPEEKEAEENKENVDASKDKENEAGKKKVEHEISEGNVA
TAAAAALASAATKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEA
LEQQRQQLLTERQNFHMEQLKYAELRARQQMEQQHSQNPQQSHQHSSGPGMNPLGAPAHP
GLLPHQQPPPYPMMHHQMPPPHPPQPGQMPGPGSMIPGQPMPGRMMPSVSANIHPASGGP
PPPGMSPMSGNLIGPRVPLAAPNGMYPPPAQPPPPAEGVTPPPAGAPPASAAP
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atgcgcggcgtgaggcgggtgggaggtgcagggccgcggtggcggcgctcggcgagggta
acaatggcggcggcggtggcggcggcgggcggtgggaccggggccgggcccggcggcgca
gctgcggcagcggcggcagcagcgggggctgtggcggtgagcggaggcgcaggctgcgcg
gccctgtcggtgtcgcggcggaaggacggcggcccgacggggaagttctgggagagcccg
gagacggtgtcccagctcgactcggtccgcgtctggctggggaagcactacaagaagtat
gttcaagcagatgctcctaccaataaaacactggctgggctggtggtgcagctgctgcaa
ttccaggaagatgcctttggaaaacatgtcaccaatcctgccttcacaaagcttcctgca
aagtgcttcatggatttcaaagctggaggtacattatgtcacattcttggtgctgcttac
aaatataagaatgaacagggctggcggaggtttgacctgcagaatccatcccgtatggat
cgaaatgtggagatgttcatgaacattgagaaaacactagtgcagaacaattgtctgagc
agaccgaccatctacctcattccagatatagaattgaagttggctaataaattgaaggat
atcgtcaaacgtcaccagggtacagtaaccgaagagaaatcgaaggctacacaccatgtt
tatccaagtcctacctcaatggatgatgatgaatggttgagacctgtgatgaaaaaggac
aagcaggtgctggtacactggggctattttccagacagctacgacacttgggttcatgcc
aatgagatagacgccgaaattgaggatcctccaattcctgaaaagccatggaaggttcat
gccaagtggattttggacacagatgtattcaatgaatggatgaatgaagaggattacgag
gtagatgagaacaggaaaacagtgagttttcggcagagaatctccatgaaaaatgaagag
cctgtacgtagtcccgagaggagagacaggaaagcagcagcaagtacaaggaagaggaag
cattctccttctccgccccccactcctgtggagtcgagaaaaaagacagggaagaaagga
caagcagccttatatgggaaaaggagagggcagaaagaagaagatgagcaagaagatctt
acaaaggacatggaggatcccaccccagtacctaatatagaagaagtggtgcttcccaaa
aatgtgaacccaaagaaagacagtgaaaacacgcctgtgaaaggaggaacggtagcagac
ctcgatgaacaggatgaggagactgtggcaaccggaggaaaggaagatgaagatcctaac
aaaggcgatcaaagtcggtcggttgatccaggtgaagataatgtcaccgaacaaaccaac
cacatcattattccaagctatgcatcctggtttgactacaactgtattcacgtgatcgaa
cgtcgggctcttcctgaattcttcaatggaaaaaacaagtccaagactccagaaatatac
ctggcttaccgcaacttcatgattgacacctatcgcttaaaccctcaagagtacttgacc
agcactgcctgcagaaggaacctgaccggagatgtgtgcgctgtcatgagagtacatgct
ttcctggagcagtggggtctcattaattaccaagtggatccagaaagccgtcccatggca
atggggcctcctcctacccctcacttcaatgtgctggctgatacaccctcgggacttatg
cctctccatatccgcactccgcaggttccagctgctcagcagatgttgagttttcctgag
aaaaacaaagagaagcctactgatctgcagaacttcggacttcgcacagacatttactca
aagaagactttagcaaagagtaaaggtgcaagtgctggaagagaatggacagaacaagag
acattgctgctattagaagctctggagatgtacaaagatgactggaacaaagtctcggag
cacgttgggagccgtacccaggatgagtgcattctccattttctgagactccccattgaa
gacccctacttagagaactcggatgcgtccctgggcccgctggcgtaccaacccgtccct
ttcagccagtctggcaatccggtcatgagtaccgtcgccttcctggcatccgtggtggat
ccccgggtggcgtctgccgcggcgaaggctgcgttagaggaattttctcgagtcagagaa
gaggttccactggagctcgttgaagctcatgtaaagaaagtacaggaggcagcaagagcc
tctgggaaggtggatccaacatacgggctggagagcagctgcattgccggaacaggtcca
gatgagccagagaaaatcgatggagctgaagaagaaaagatggaaacggagacagatggg
caacagtctgagaaggttgaaaacaaagcggagagtgaaattgaggaaggcgataaagta
caagaaggggaaaatgagagaaatccagaaaaagagcaagacagtgaagtgactgcagag
cccaagccagaagaaaaggaggcagaagagaacaaggagaacgttgatgccagcaaagac
aaagagaacgaggctgggaagaagaaagtggaacatgaaatctcggaaggaaacgtagct
acagctgcagctgctgcccttgcctcagctgccaccaaagcaaagcacctagcagcagtg
gaagaaagaaagatcaagtccctggttgcccttctggtggaaacgcagatgaagaagctg
gagataaaacttcgccattttgaggagctggaaaccattatggacagagagaaagaggca
ttagagcagcagagacaacagttgctgacagaacgccagaatttccacatggaacagctg
aaatacgctgaattaagggctcgtcagcaaatggagcagcagcacagccaaaacccccag
cagtctcaccagcactctagtgggcctggcatgaaccccctgggggcaccagcacatcca
ggcttactgccccaccagcagcccccgccgtaccccatgatgcaccaccaaatgccacca
cctcacccgccacagccaggtcagatgccaggacccggatcgatgatacctggacagccc
atgcctggccggatgatgccgagtgtgtcggccaacatccatccagccagcggtggtccc
cccccgcccggcatgtcacccatgtcaggaaacctaattggacctcgtgttcctctggca
gctccaaatggcatgtatccccctcctgcgcagccgcctccaccagcggaaggggtgacc
ccacctccggcaggagcccccccggcctcagccgctccctaa
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