Rissa tridactyla (black-legged kittiwake): 128905040
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Entry
128905040 CDS
T09443
Symbol
CDH20
Name
(RefSeq) cadherin-20
KO
K06807
cadherin 20, type 2
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
rtd04515
]
128905040 (CDH20)
Cell adhesion molecules [BR:
rtd04515
]
Cadherins
Major cadherins
128905040 (CDH20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_CELSR2_9th
Cadherin_4
Motif
Other DBs
NCBI-GeneID:
128905040
NCBI-ProteinID:
XP_054046399
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Position
2:89366286..89402763
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AA seq
798 aa
AA seq
DB search
MWTSGRMSNAKNLLGLGISLYFWGLMDLTTTVLSGSARPLTEGQEDNLSDKLHQRMKRSW
VWNQFFVLEEYTGTDPLYVGKLHSDMDRGDGSIKYILSGEGAGIVFTIDDTTGDIHAIQR
LDREERSQYTLRAQALDRRTGRPMEPESEFIIKIQDINDNEPKFLDGPYVASVPEMSPVG
TSVIQVTATDADDPTYGNSARVVYSILQGQPYFSVDSRTGLIRTALMNMDREAKEYYEVI
IQAKDMGGQLGGLAGTTTVNITLSDVNDNPPRFPQKHYQMSVLESAPISSTVGRVVAKDL
DEGINAEMKYSLVDGDGLDVFDINTDPNYQVGIITVRKPLSFESKKSYTLKVEGANPHLE
MRFLNLGPFRDTTTVHISVEDVDEPPVFDPSFYFVEVPEDVEIGTTIQIISAKDPDVTNN
SIRYSIDRSSDPGRFFYVDITSGALMTARPLDREDVSWHNITVLAVELNNPSQVGSVSVT
VKVLDVNDNAPEFARFYEAFVCENAKAGQLVQTVSAIDRDDPQEGQHFYYSLAPEAANNP
NFTLRDNQDNTAWILTRRSGFRQHEQNTFYLPILISDNGRPVLSSTGTLTVHVCSCDDDG
MVMSCNAEAYVLPVSLSRGALIAILACIFVLLVLVLLILSMRRQRKQPYIMDEEENIHEN
IVRYDDEGGGEEDTEAFDIAAMWNPREAQLVVKNRQDMLPEIESLSRYVPQACVMDNNVH
NYVLAKLYEADMDLWAPPFDSLQTYMFEGNGSVAESLSSLQSVTTDSDQSYDYLTDWGPR
FKKLAEMYGATDSSGVLW
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atgtggacttcaggtagaatgagcaatgcaaagaacttgcttggacttggcatctccttg
tatttttggggactgatggaccttactacaactgtgctgtcaggaagtgccaggcccctc
actgaagggcaagaagacaacctgtcagacaagctgcatcagcgtatgaagcggagctgg
gtgtggaaccagttctttgttctggaggagtacacaggaactgaccctctgtacgttggg
aagctccactccgacatggacaggggagatggttcgatcaaatacatcctctcaggagag
ggagctggcattgtgtttacaattgatgataccacgggggacatccatgccattcagcga
ctggaccgggaagaaaggtcgcagtacaccctgagggcacaggctctggacagacgaacg
ggccggccgatggaaccggagtcggagttcatcatcaaaatccaagacattaatgacaat
gaacccaagttcctggatgggccttacgtagcctctgttccagaaatgtcacctgtgggc
acctctgttatccaggtgacagcgacagatgctgatgacccaacctatgggaacagcgca
agagtagtgtacagtattctccaaggacaaccatatttctctgtggactctcggacaggc
ttaattagaacagctctaatgaacatggacagagaagcaaaagaatattatgaagtgatt
atccaggccaaggatatgggtggacagctgggaggattagctggaacaaccacagtcaac
atcaccctctctgatgtcaacgacaatccacccagatttccacagaagcattatcagatg
agcgtgctggagtccgctcccatcagctccaccgtgggccgcgtggttgctaaagacctg
gacgaaggcattaatgcggagatgaaatacagccttgtggacggagacggactggacgtc
tttgatattaacaccgatcctaattaccaagttggcatcataactgtgagaaagccttta
agttttgagagcaagaaaagctacaccttgaaagtagagggtgccaacccccacctggaa
atgcggttcctgaacctgggtcccttccgcgacaccaccacagtccacatcagtgtggag
gatgtggacgaacctcctgtgtttgaccccagcttctactttgtggaagtgcccgaggac
gtggagattggaaccaccatccagatcatttctgccaaggacccggatgtgaccaacaac
tcgatcagatactcgattgacaggagcagtgatccggggcggttcttttatgtcgacatt
acatcaggagcactgatgactgcaagacctcttgaccgggaggacgtttcttggcacaac
atcactgtgctggccgtggagctgaacaacccctcgcaggtgggcagcgtctccgtgaca
gtgaaagtcctggatgtgaacgacaatgcaccggagtttgcaaggttttatgaagctttt
gtctgtgaaaacgccaaagccggacagctggtccagacagtgagcgccatcgacagggat
gacccacaggagggacagcacttctactacagcctggctccggaggcagccaacaacccc
aactttactctaagggacaatcaagacaatacagcgtggattttgacaaggcgctctggc
ttcagacaacatgagcagaacaccttttacctccccatcctgattagcgacaacggccgc
cccgtgctgagcagcacgggcacgctgaccgtgcacgtgtgcagctgcgatgatgacggc
atggtgatgtcctgcaacgcggaggcttacgtcctccctgtcagcctgagcagaggagca
ctcatcgcgatcctcgcctgcatctttgtcctgctagtgctggtgctcctcatcctctcc
atgcggcgccagcggaagcagccgtacatcatggatgaggaggagaacatccatgagaac
atcgtcaggtacgatgacgagggtggtggggaggaggacacggaggccttcgatatcgcc
gccatgtggaacccacgggaggcccagctggtggtgaaaaaccgtcaggacatgctccct
gaaatagagagcctctcccgatacgtgcctcaggcgtgcgtcatggacaacaacgtccac
aactacgtgctcgccaagttgtacgaagctgacatggacctgtgggcacctcccttcgac
tccctccagacgtacatgtttgaagggaacggctcggtggcggagtcactcagctcccta
cagtcagtgacaacagactcagaccagagctacgactacctgacggactgggggccgcgc
ttcaaaaagctggccgagatgtacggtgccacagacagcagcggggttctgtggtaa
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