Rissa tridactyla (black-legged kittiwake): 128905200
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Entry
128905200 CDS
T09443
Symbol
PDCD6IP
Name
(RefSeq) programmed cell death 6-interacting protein isoform X1
KO
K12200
programmed cell death 6-interacting protein
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd03250
Viral life cycle - HIV-1
rtd03272
Virion - Hepatitis viruses
rtd04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
128905200 (PDCD6IP)
03272 Virion - Hepatitis viruses
128905200 (PDCD6IP)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
128905200 (PDCD6IP)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rtd04131
]
128905200 (PDCD6IP)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rtd04147
]
128905200 (PDCD6IP)
Membrane trafficking [BR:
rtd04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT associated proteins
128905200 (PDCD6IP)
Exosome [BR:
rtd04147
]
Exosomal proteins
Proteins found in most exosomes
128905200 (PDCD6IP)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRO1
ALIX_LYPXL_bnd
Motif
Other DBs
NCBI-GeneID:
128905200
NCBI-ProteinID:
XP_054046870
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Position
2:complement(117528169..117562767)
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AA seq
885 aa
AA seq
DB search
MTNFISVQLKKASEVDLAKPLCKFIQQSYPGGDAQAEHCRAAEELSKLRKSALGRPLDKH
ESALETVLRYYDQLCAIEPKFPFSENQVCVTFTWKDAFDKGSLFGGSAKLALASLGYEKT
CVLFNCGALASQIAAEQNLDNDEGLKAAAKHYQFASGAFQHIKDTVLSALNREPTVDISP
DTVGTLSLIMLAQAQEVFFLKATRDKMKDGIIAKLANQAADYYGDAYKQCQYKDTLPKYF
YFQEVFPVLAAKHCIMQANAEYHQSILAKQQKKFGEEIGRLQHAADLVKTVASRYDEYIN
VKDLVDKINRALTAAKKDNDFIYHDRVPDLKDLESIGKASLVKSTPVVVPLSQKFTDLFE
KMVPLQVQQSVSVYNQRKADLVNRSIAQMREATNLANGVLASLNLPAAIEDVSGDTVPQS
ILNKSKSVIEQGGIQTVDQLIKDLPELLQRNKEILDESLRLLDEEETTDNDLRTKFKERW
QRTPSNELYKPLRAEGASYHNILSKAVQADGQVKERYQAHRDTIALLCKPESELNAAIPS
ANPAKTLQGSEVVNVLKTLLANLDEVKKEREQLENDLKSVNFDMTSKFLTALAQDGAINE
EAISVTELDRIYGSYTQKVQESLKKQEELLKNIQNAHQDFSKMKQSNNESNLREEVLKNL
AVANDNFVELVANLKEGTKFYNELTEFLLKFQNKCSDIVFARKTERDELLKDLQQSIARE
PSAPSIPLPTYQTTSAGGSKPAASSTPTPAPRTMVGTKPQPPARPPPPVISAASSSSSAS
APSGTAAAPAAAPAAAPTAAPAPGASAPAASTAPPQAQGPPYPTYPGYPGYCPMPMPLAY
NSYMYGQYNLPYAPAPVFQNPGQAPYPAPQQPGYPFPQQPFYPQQ
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgacgaacttcatctcggtgcagctgaagaaggcctcggaggtggacttggccaagccg
ctgtgcaagttcatccagcagagctacccgggcggcgacgctcaggccgagcactgccgc
gccgccgaggagcttagcaagctccgcaagagcgcgctcggccgcccgctcgacaagcac
gagagcgcgctcgaaaccgtcctcagatactatgatcagctgtgtgcaattgaaccaaag
tttccgttctctgaaaatcaggtctgtgtaacatttacatggaaggatgcttttgataaa
ggttcactttttggaggatctgccaaattggctctggcaagtttggggtatgagaagacc
tgtgttttgttcaactgtggagcgctggcaagccagattgcagcagaacagaatctagat
aacgatgaaggactgaaagctgcagctaagcactatcagtttgcaagtggtgctttccaa
cacattaaagacacggttttgtcagccttgaatcgagagcctacagtggacatctctcca
gacacagttggaactctcagtcttattatgttggctcaagcccaagaagtcttctttttg
aaagctacaagagataaaatgaaagatggtatcatagctaaactagctaatcaagctgct
gattactatggtgatgcatacaaacaatgtcagtataaagatactttgcccaagtatttt
tatttccaggaggtgtttcctgttctggctgcaaagcactgcattatgcaggccaatgca
gaatatcatcaatctatcctggcaaaacagcagaagaaatttggtgaagaaattgggagg
ttgcagcatgcagcagacttggtgaaaacagtggcatctcgttatgatgaatatataaat
gttaaagatctggttgacaaaatcaaccgtgcacttacagccgccaaaaaagacaatgac
ttcatttaccatgaccgggttcctgacctgaaagatttggagtccattggaaaagccagt
cttgtgaagtctactccagttgttgttcctctgagtcagaaattcactgacctgtttgag
aagatggttccattgcaagttcagcaatctgtgagtgtttataaccagagaaaggcagat
ctagtaaacaggtcaatagcccagatgagagaagccacaaatctggcaaatggtgtgttg
gcttccctcaatcttcctgctgctattgaagatgtgtctggtgatactgttcctcagtct
attttgaacaagtctaagtctgtgattgaacagggaggaattcagactgttgatcagctt
atcaaagatctgcctgagctgctacaaaggaacaaagaaattttagatgaatcactacgg
ttattagacgaagaagaaactacagacaatgacctgcgaacaaaattcaaagaacgctgg
cagagaacgccatccaacgaactctataagcctttaagagcagagggagccagttaccat
aacattttgagtaaagctgtgcaagcagatggccaagttaaagagcgctatcaggctcac
cgggatacgattgcacttctgtgtaagccagagtcagaactcaatgccgccattccttct
gccaacccagcaaaaacattacaaggaagtgaggttgttaatgtcttaaaaactttgttg
gccaatctggatgaagttaagaaggagagagaacagctggaaaatgacctgaaatctgta
aattttgacatgacaagcaaattcctgacagcacttgcacaggatggtgctataaatgag
gaggctatctctgtaaccgagttggacagaatttatggaagttacacacagaaagtgcaa
gagtccctaaaaaagcaggaagaacttctcaaaaacattcagaatgcacatcaggatttt
tcaaagatgaaacaatcaaacaatgaatctaatttaagagaagaagttttgaagaactta
gccgtagcaaatgacaacttcgtggaacttgtagccaatttaaaagaaggcacaaagttt
tataatgagctgacagaattcctgctgaaattccaaaacaaatgcagtgacattgtcttt
gctcgcaagactgaaagagatgaactgctcaaagatttgcagcaaagcattgctagggaa
cccagtgctccttctattcctctgcctacgtatcagaccacatcagccggaggaagtaag
cctgctgcatcctcgactcctactccagcacccagaaccatggtggggactaagccgcag
ccaccagcacggccaccaccaccagtgatttctgcagcaagcagttcctcttctgcatca
gcaccctctggaacagctgcagctcctgctgcagctcctgctgctgctcctactgctgct
cctgctccaggagccagtgcacctgcagcaagcactgcacctccacaggcacagggacct
ccttacccaacttatccaggttacccagggtattgcccgatgccaatgccattggcctat
aattcatacatgtatggtcaatataatctgccatatgcacccgcacctgtgtttcaaaac
cctggacaagcaccatatccggcacctcaacaacctggatacccttttcctcaacagcct
ttttatcctcagcaataa
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