Rissa tridactyla (black-legged kittiwake): 128905489
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Entry
128905489 CDS
T09443
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd03013
Nucleocytoplasmic transport
rtd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128905489 (UPF2)
03015 mRNA surveillance pathway
128905489 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtd03019
]
128905489 (UPF2)
Messenger RNA biogenesis [BR:
rtd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
128905489 (UPF2)
mRNA cycle factors
P-body specific factors
128905489 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
128905489
NCBI-ProteinID:
XP_054047651
LinkDB
All DBs
Position
1:212254832..212324738
Genome browser
AA seq
1271 aa
AA seq
DB search
MPAERKKPANMEEKESLLNNKEKEFSERRPVSTREKPKEDVKVGMKRETLKIPEDKKKKL
EEDKRKKDDKERKKKEEDKVKAEEEQKKKEEEEKKKLEEEEKKKLEEEEKKKQEEAAAQL
KEKEEAHQLHQEAWERHQARKELRSKNQNAPDNRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNSLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QAWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRES
HTHVSVVISFCRHCGDDIAGLVPRKVKTVAEKFNLSFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNIERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLD
ENMPDLPQEKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKCSQNKDSSKDESRDSKDAKDNKEAPGSEDLELELENLDINDDPLELDCGDEAE
DLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANR
RKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLKGDFRFHVRKKDQINIE
TKNKTVRFIGELTKFKMFSKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESH
LRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYIRKLLYK
DLSKVTTEKVLRQMRKLPWQDAEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDV
GIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGV
NPDGSPSPLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLDV
WTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEEAIRQVQDLEREFLIKLGIVNDKDSKD
SITEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDNEEEEGEEEEEENTDYLTD
SNKENETDEENTEVMIKGGGLKHVPCAEDEDFIQALDKMMLENLQQRSGESVKVHQLDVA
IPLHLKSQLKKGPPLGGGEGESESGDTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQ
QQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNA
DLIFKTGGRRR
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgcaaaaagccagcaaatatggaagaaaaagaatctctcttaaataat
aaagaaaaagaatttagtgaaaggcgaccagtgagcaccagggagaagccaaaagaagat
gtcaaggttggcatgaagagagagacgttaaagattcctgaagataaaaagaaaaaactg
gaagaggataaaagaaaaaaagatgacaaggagcggaagaaaaaagaagaggataaagta
aaggcagaagaagagcaaaagaagaaagaagaggaagaaaaaaagaaacttgaagaagag
gagaaaaagaaactagaggaggaagagaaaaagaaacaagaagaagcggctgcccaattg
aaagaaaaagaggaagcacatcagctccaccaggaagcttgggagcgccatcaggcaaga
aaagagctccgcagcaaaaaccagaatgcaccagacaatcgccctgaggaaaacttcttc
agcagactagattccagtctgaagaagaacacagcttttgttaagaagctgaaaaccatt
acagagcaacaaagggactccttgtcccatgactttaatagcctgaacttaagcaaatac
attgcagaagcagtcgcttctattgtggaagccaaactgaaaatatcagatgtgaactgc
gctgtgcacttgtgttccctctttcaccagcgctatgctgattttgctccttcgttactt
caggcttggaaaaaacattttgaagcaaggaaggaagagaagactcctaacattaccaag
ttaagaactgatctgcgtttcattgcagaattgacaatagttgggattttcactgacaag
gaaggtctctctttaatctatgagcagcttaaaaatattattaatgctgatcgagaatcc
cacactcatgtttctgtggttatcagcttttgtcggcactgtggagatgacattgctggt
ttggtgccaaggaaagtaaaaactgttgcagagaagtttaacttgagctttcctcctagt
gagataattagcccagagaaacaacagcccttccagaatttgttgaaggaatactttacg
tctttgaccaaacacctgaaaagggaccacagggagctacaaaatattgaaagacaaaac
aggcgcattcttcactccaagggagagctgagtgaagatcgacacaagcaatatgaggaa
tttgcaatgtcgtatcagaagctgttggcaaattctcaatctctagctgatcttttggat
gaaaatatgccagaccttccccaagagaaaccaacacctgaggaacatggacccggtatt
gatatcttcacgccaggaaaacctggtgaatatgacctggaggggggtatctgggaagac
gaagatgctagaaacttctatgagaatctcatcgacttaaaggcttttgtgccagcaatt
ttgtttaaagataatgaaaaatgttcccagaacaaggattccagcaaagatgaatcaaga
gattcaaaagatgccaaagataataaggaagcacctgggagcgaggatttggagttggag
ctggagaacctggatattaatgatgatcctctggagctagactgtggagatgaggcagaa
gatcttacaaaaaagcttcttgatgagcaagaacaagaggatgaagaagccagtactgga
tctcatttgaaacttatagtagatgcttttctccagcagcttccgaattgtgtcaacaga
gacctcatagacaaggcagcaatggatttttgcatgaatatgaatacaaaagctaacaga
agaaaactagtacgggcgcttttcatagttcctagacaaaggttggatttactaccgttt
tatgcaagactggttgccacattgcatccctgtatgtctgatgtagcagaggatctttgt
tccatgctgaaaggagatttcagatttcatgtaagaaaaaaggaccagatcaacattgaa
acaaagaataaaacagtgagatttattggtgagcttaccaagtttaagatgttctccaaa
aatgatactctccactgtttaaagatgcttctgtcggacttttctcatcaccatattgaa
atggcatgtactctgctggaaacctgtggaagattcctcttcagatcaccagagtctcac
ttaagaaccagtgttcttttggaacaaatgatgagaaaaaaacaagcaatgcatctagat
gcacgctatgttacaatggtagaaaatgcctattactactgtaatcctcctccagctgaa
aaaactgtgaagaaaaaacgtcctcctttgcaggaatatattcgtaagcttctttacaag
gatctctccaaggttaccacagagaaggtcctgagacagatgcgcaagctgccttggcag
gatgcagaagtaaaagactatgttatatgctgtatgatcaacatctggaatgtgaaatat
aatagtattcactgtgtagccaacctcttagcagggttggtcctttaccaggaagatgtc
ggaatccatgttgtggatggagtgctagaggatattcgacttggaatggaggttaaccaa
ccgaagtttaaccagcggcggatcagcagtgccaagtttctgggggagctttacaattat
cgaatggtggagtcagctgtaatatttcgaactctgtattctttcacatcatttggcgtg
aaccctgatggtagtcctagtccactggatcctccagagcatctcttcaggatcagacta
gtctgtacaatcctcgatacctgtgggcagtattttgacagaggatccagcaaacgaaaa
cttgattgcttccttgtatattttcagcggtatgtttggtggaaaaaaagtctggatgtt
tggacaaaggaccacccgtttcctatagacatagactatatgatcagtgatacactggaa
ctgctgagaccaaagataaagctctgcaattctctggaagaagctatcagacaggtgcaa
gacttggaaagagaattcttaataaaattaggaattgtgaatgacaaagattccaaagat
tccattacggaaggagagaatctagaagaggatgaagaggaagaggaaggtggagcagag
acagaggaacaatctggaaatgaaagtgaagtaaatgagccagaagaagaggagggctct
gacaatgaggaagaagaaggtgaagaggaggaggaagaaaacacagattatcttacagac
tccaataaggaaaatgaaactgatgaggagaatacagaagtaatgattaaaggaggagga
cttaagcatgtcccttgtgcagaagatgaggacttcattcaggcattggataaaatgatg
ctggaaaatcttcagcaacggagtggcgaatctgttaaagtacaccagttggatgttgct
attcctctacatctcaaaagtcagctcaagaagggtcccccacttggaggtggggaagga
gagtcagagtctggagacacgatgccatttgtcatgttaacacgaaaaggcaacaaacag
cagtttaagatcctgaatgtaccaatgtcttcccaacttgctgcaaaccattggaaccaa
cagcaagctgaacaagaggaaagaatgaggatgaaaaagctgactttggatatcaatgaa
cggcaagaacaagaggactaccaggaaatgttgcagtctctggcacagcgtccggctcca
gcaaatactaatcgtgaacggcggccccggtaccagcatccgaagggagcacctaatgca
gatctaatctttaaaactggtgggaggagacgttga
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