Rissa tridactyla (black-legged kittiwake): 128905513
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Entry
128905513 CDS
T09443
Symbol
SHH
Name
(RefSeq) sonic hedgehog protein
KO
K11988
sonic hedgehog
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
128905513 (SHH)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rtd01002
]
128905513 (SHH)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
rtd00536
]
128905513 (SHH)
Peptidases and inhibitors [BR:
rtd01002
]
Cysteine peptidases
Family C46: hedgehog family
128905513 (SHH)
Glycosaminoglycan binding proteins [BR:
rtd00536
]
Heparan sulfate / Heparin
Morphogens
128905513 (SHH)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HH_signal
Hint
Peptidase_M15_3
Ribosomal_S6e
Motif
Other DBs
NCBI-GeneID:
128905513
NCBI-ProteinID:
XP_054047689
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Position
2:158558766..158569360
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AA seq
425 aa
AA seq
DB search
MDEMLLLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLG
ASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQW
PGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYES
KAHIHCSVKAENSVAAKSGGCFPGSATVHLEQGGTKLVKDLSPGDRVLAADAEGRLLYSD
FLTFLDREDGSHKLFYVIETRQPRARLLLTAAHLLFVAPQHNQSQEGTPSSQALFASRVR
PGQRVYVLGEGGRQLLPAAVHSVSLREEASGAYAPLTAQGTILINRVLASCYAVIEEHSW
AHWAFAPFRLLQGMLAALCPSAGGAPEGAPASPGIHWYSRLLYRIGSWVLDSDSLHPLGM
VVPSS
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaatgctgctgttgacaagaattctcttggtgggcttcatctgcgctctttta
gtctcctctgggctgacttgtggaccaggcaggggcattggaaaaaggagacaccccaaa
aagctgacccctttagcctataagcagtttattcccaatgtggcagagaagaccctaggg
gccagtggaagatatgaagggaagatcacaagaaactccgagagatttaaagaactaacc
ccaaattacaaccctgacattatttttaaggatgaagagaacacgggagctgacagactg
atgactcagcgctgcaaggacaagctgaacgccctggcgatctcggtgatgaaccagtgg
cccggggtgaagctgcgggtgaccgagggctgggacgaggacggccaccactccgaggag
tccctgcactacgagggccgcgccgtggacatcaccacctcggaccgggaccgcagcaag
tacggcatgctggcccgcctggccgtcgaggccggcttcgactgggtctactacgaatcc
aaggcgcacatccactgctccgtcaaagcagaaaactcggtggcggccaaatcggggggt
tgcttccctggctcggccacggtgcacctggagcaaggcggcaccaagctggtgaaggac
ctgagccccggggaccgggtgctggcggccgacgcagagggccggctgctctacagcgac
ttcctcaccttcctcgaccgggaggacggctcccacaagctcttctatgtcatcgagaca
cggcagccccgggcccggctgttgctgacagccgcccacctcctcttcgtggccccccaa
cacaaccagtcgcaggaggggacccccagcagccaggcgctcttcgccagccgcgtacgg
ccgggccaacgggtctacgtgttgggcgagggcgggcggcagctgctgccggcggccgtg
cacagcgtctcgctgcgggaggaggcttcgggggcgtacgccccgctcaccgcccagggc
accatcctcatcaaccgggtgctggcctcctgctacgccgtcatcgaggagcacagctgg
gcgcactgggcgttcgctcccttccgcctgctccaggggatgctggccgccctctgcccc
tccgcagggggggctccggagggtgcccccgcctcccccggcatccactggtactctcgt
ctcctctaccgcatcggcagctgggtgctggatagtgactctctgcacccgctgggcatg
gtggtgccatccagctga
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