Rissa tridactyla (black-legged kittiwake): 128906240
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Entry
128906240 CDS
T09443
Symbol
COL22A1
Name
(RefSeq) collagen alpha-1(XXII) chain
KO
K16630
collagen type XXII alpha
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
128906240
NCBI-ProteinID:
XP_054049227
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All DBs
Position
2:6096142..6348970
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AA seq
1614 aa
AA seq
DB search
MSVPGRCRVPHLLVLLMFVFGGKRIEAQRAGCKNVHYDLVFILDASSSVGKEDFEKVRQW
VSNLVETFEIGPAKTRVGVVRYSDHPTTEFDLGKYKTREEIKEAARKIRYYGGNTNTGDA
LRYINTYSFSKEAGGRLSDPTVKKVAILLTDGRSQDYVLDPATAAHRAGIRIFAVGVGEA
LKEELDEIASEPKSAHVFHVSDYNAIDKIRGKLRRRLCENVLCPNVHVEGDRFKHTNGGT
DEIPGFDLMDSFSVKQIFGMKENGIQSAYVRLGSFPVVQKTEDVFPQGLPDEYAFVTTFK
FRKASRKEDWYIWQIIDKYGIPQVSIRLDGENKAVEYNAVGLTKDAVRVVFRNARVSDLF
DRSWHKIALSIQSKAVSLYIDCRLVQMLPIEDRENIDIQGKTVIGKRLYDSVPIDFDLQR
MVIYCDSRHAELETCCDIPSGPCQVTVLTEPPPLEVRPTVGNEQVGHLKTFNCSCPAGQK
GERGPTGPEGPKGQKGESGSPGFPGLRGEKGEPGRAYGRGEKGEKGEEGPPGFPGLKGDK
GEKGSLGSPGPPGKDGAKGEAGQPGQPGAFGLPGPAGPKGSEGKQGPPGIKGYVGAPGLQ
GERGEKGTRGDKGERGLDGFPGKPGVEGKQGPAGSPGPPGASGTKGEKGEPGLPGLPGFS
VPTEGLKGEQGEPGPRGPQGQPGLPGPPGEAGLEGKPGVPGLPGQRGKKGEPGFPGINGL
IGPQGPPGPPGIAGPPGPPGAPGLPGEIGVSGKTGPPGPAGPPGKDGFSGLPGLPGQKGE
QGEKGEEGFPGKAGPKGETGSRGQPGEQGEAGLPGPQGLPGLRGDKGDRGEKGKDGLPGL
KGERGEKGDMGSPGPPGLPGTTSFFTPHPRIPGEPGPKGEKGDKGTSGEPGLPGIPGGQG
VPGPAGVQGTKGQKGAQGEAGAPGEAGVTGPAGPPGPRGLPGNVGVPGDPGLPGKEGAKG
EKGDPGKEGKVGLPGPAGEPGPAGEPGLPGKGKDGEKGQRGPPGLPGPFGHKGERGAPGL
PGQPGDRGVPGIGLAGPPGPMGPPGDKGSLGPRGVPGIPGPQGPPGQDGLPGNPGERGPP
GKPGSSPLLSPEDINLLVKDVCSECPPGPPGLPGIPGFKGDKGLRGPPGRDGQDGKMGNA
GPRGPAGPPGLDGPKGSKGDRGMTGDTGEKGEQGHPGMPGFSGAPGNPGPPGPDGAPGPI
GPAGNPGDIGKDGPPGPQGPPGLPGLPGIAGNDGKDGKPGSLGEPGKPGEPGLPGQEGAR
GLPGFKGQRGDTGPPGPRGEPGATGPAGREGPPGKDGETGPIGPQGPRGLRGQPGKNGLP
GSAGEPGPAGNPGPKGNKGENGSPGLPGFIGPRGPPGEPGEKGPPGREGAPGKPGEIGSK
GERGEPGIKGEKGPQGEKGPPGDPGIPGHKGHPGLMGPHGPPGDTGQVGPPGPPGQPGFP
GPRGEPPSLDTLRRLIQEELTKQLDAKLAYLLAEIQPAHVKASHGRPGPPGPPGKEGLPG
RTGPPGEPGQPGQIGSEGPPGPIGPKGERGAKGEKGDTGIGQRGEIGPPGIPGLPGEPGY
AKDGMPGPPGPQGEAGVPGLTGPQGPPGANGQCDPTQCAYYASLAARPANVKGP
NT seq
4845 nt
NT seq
+upstream
nt +downstream
nt
atgtctgttccgggaagatgccgcgtgccccatctcctggttcttctcatgttcgtgttc
ggtgggaagagaattgaggcacaaagagcaggttgcaagaatgttcactatgaccttgtc
ttcatcttggatgcatcctccagcgtcggaaaagaagattttgagaaagttcggcagtgg
gtgtctaatttagtggaaacttttgagattggcccagccaaaacccgtgtaggtgtggtg
cgatacagtgatcatccaaccacagagtttgacctgggaaaatacaaaacccgtgaggaa
atcaaagaggctgcacgaaaaattaggtattacgggggtaatacgaacactggagatgct
ctcaggtacatcaacacctacagtttttccaaagaagctggtggtagacttagtgatcca
actgttaaaaaagtggctatccttctgactgatggaaggagccaggattatgtcttggat
cctgccactgcagcccatcgggctgggattaggatctttgctgtgggtgttggcgaagcc
ttaaaagaggaactcgatgagattgcttcagaacccaagtctgctcacgtgtttcatgtc
tccgattacaatgccatcgacaaaattcgggggaagctgagaagacgtctctgtgaaaat
gtcctgtgtccaaatgtccacgtggaaggagatcgattcaaacacaccaatggggggact
gatgagattccaggatttgacctgatggattcattcagcgtgaaacagatttttggaatg
aaagaaaatggaattcagagcgcttatgtacgacttggaagcttccctgttgttcagaaa
actgaggatgtatttccacaaggtctgcctgatgaatatgcctttgtaactactttcaaa
ttccggaaggcttccaggaaagaagactggtatatttggcagattattgacaagtacggc
ataccacaggtctcaatccgactggacggagagaacaaagctgtggagtacaatgccgtt
gggctcaccaaggatgctgtgagagtggtcttccgaaatgcacgagtcagtgatcttttt
gaccgcagctggcacaaaattgccctcagcatccagtcaaaggctgtctcgctttacata
gactgcagactggtgcagatgctgcccattgaagacagggaaaatattgacattcaagga
aagactgtgattggcaaacgcttgtatgatagtgtccccattgattttgatcttcagcgg
atggttatttactgtgattctcggcatgctgagctggagacctgctgtgacattccctct
ggaccttgccaggtcacggtcctgacggaaccacctcccctggaagtgaggccaactgtt
ggcaacgagcaagttggccacctcaagactttcaactgctcctgtcctgctggacaaaag
ggggagagaggtccaactggtcctgaaggtcctaaaggtcaaaagggagaaagtggcagc
ccagggtttcctggactcagaggagaaaaaggagagccaggcagagcctatggcagagga
gaaaagggagaaaagggtgaagaaggtccccccggctttcctggactgaaaggggataaa
ggagagaaagggtccctgggctcacctggcccacctgggaaggatggagcaaaaggagaa
gccggtcaaccaggacagccaggagcatttggactgcctgggccagcaggtccaaaggga
tctgaaggaaaacagggtcctccaggaattaaaggctatgtaggcgcaccgggtctacaa
ggagaaagaggagaaaagggaacacgaggagacaagggagaacgaggcctagatgggttc
cctggaaagccaggtgtggaggggaaacagggtcctgctggcagcccgggccctccaggg
gccagtgggaccaaaggagaaaagggtgaaccaggacttccaggattgcctggcttttca
gtgcctactgaaggcctaaaaggagagcagggagagcctgggccacgaggaccacaaggc
caacctggacttcctggacctccgggagaggctggtctggaaggcaagcctggagtccct
ggtttaccaggtcaaaggggtaaaaagggagaaccgggattcccaggaatcaatggtctg
attggccctcagggacctccagggcccccaggcattgctggaccccccggaccacctgga
gccccagggctgccaggagagattggagtttctggtaaaaccggaccaccgggaccagct
gggccgccaggcaaagatggattcagtgggcttcctgggcttcctggtcaaaagggagaa
caaggggaaaaaggtgaggaaggctttcctggaaaagctggccctaagggtgaaacgggg
agccgtggccaacctggtgagcagggtgaagcaggtcttcctggtcctcagggtttacct
ggactgagaggagataaaggagaccggggagaaaaaggaaaggatggtctcccaggactg
aaaggtgaaagaggagaaaagggtgacatgggttcccctggaccaccaggcttgcctgga
acaacatcattcttcaccccacaccctaggattcctggtgaacctggaccaaaaggagag
aaaggagataaaggaacaagtggagaacctggattacctgggatcccaggtggacaaggt
gtcccaggacctgcaggagtacagggcacaaaggggcagaaaggagcccaaggagaagcc
ggagcccctggagaggctggtgttactggaccagcagggcccccaggtccaagaggcttg
cctggaaatgtgggtgtgcctggagaccctggactgccgggaaaggagggagcaaaggga
gaaaaaggtgatcctggaaaagaaggaaaagtgggtttacctgggccagctggtgagcca
gggcctgctggagagccgggtttgcctggtaagggtaaagatggagaaaaggggcaaagg
ggcccaccaggcttgccaggaccctttggacataagggtgagagaggagctcccggcctc
cctggacagccaggagacagaggcgtgccaggaattgggctggctggaccccctggcccc
atgggacccccaggagacaaagggtcattgggtccccgtggtgtacctggtatccctgga
ccacaggggcctcctggccaggacggtctacctggaaatccaggggagagaggacctcct
ggaaaaccaggttcctcacccctgctctctccagaggacataaacctcttagtaaaggat
gtgtgcagtgaatgccctcctggccctccaggactgccaggcattccaggtttcaaaggt
gataaaggtctccgaggaccaccaggtagagatggccaggatgggaaaatggggaatgct
ggtcctagaggtcctgcaggcccacctgggctggatggcccaaagggttctaaaggagac
cgtggtatgactggggatacaggagaaaaaggtgaacagggccaccctggaatgcctggc
ttctcaggggctcctggaaaccctggtccacctgggccagatggggcaccaggaccaata
ggaccagcaggaaacccaggagacataggtaaagatggccctccgggtccacagggccca
ccagggttgcctggacttccaggcattgctgggaatgacggcaaagatggcaagccagga
tctcttggggaaccgggaaagcctggagaaccagggctcccaggccaggagggtgccaga
ggcttaccgggtttcaaaggacagagaggtgatacaggtcccccaggcccccggggggag
ccaggagcaacaggtcctgctgggcgtgaggggccaccagggaaggatggtgaaacaggt
cccataggaccgcagggccctcgaggactcagagggcagccgggcaagaatggattgcct
ggatctgcaggagaacctggcccagcaggtaacccaggtcctaaaggaaataaaggagaa
aatggcagcccaggactccctggcttcataggaccccgaggaccacctggggaaccagga
gagaaaggtcctcccggaagagagggtgcaccagggaaaccaggtgaaattggctccaaa
ggagagaggggggagcctggcatcaaaggcgaaaaaggcccccaaggagaaaagggccct
ccaggtgatcctgggatacctggtcataaaggccatccaggactgatgggtccccatgga
cccccaggagacactgggcaagttggacctcccggtcctccaggacagccaggatttcca
ggaccaaggggggaacccccatctctagacactttgagaaggctcatccaagaggagttg
accaagcagctagatgcaaagttagcttatctcctggctgagatacagcctgcgcatgta
aaagcgtcccatggcagaccaggacctcctggtccccctgggaaggaaggactcccagga
agaactggccctccaggagagcctggacagcctggacagattgggtctgaagggccacct
ggaccgattggtcccaaaggagaaagaggagcaaagggtgagaaaggagacactggcatt
ggccaacgaggggaaataggtcctccaggaattccaggcctcccaggggagcctggctat
gccaaagatgggatgccaggaccacccggccctcaaggtgaagctggggtacctggtctc
acgggcccacagggacctccaggagccaacgggcagtgtgaccccactcagtgcgcttac
tatgcaagcctggctgccagacctgccaacgtcaaagggccctag
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