Rissa tridactyla (black-legged kittiwake): 128906294
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Entry
128906294 CDS
T09443
Symbol
SOX17
Name
(RefSeq) transcription factor SOX-17
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
128906294 (SOX17)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rtd03000
]
128906294 (SOX17)
Transcription factors [BR:
rtd03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
128906294 (SOX17)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
Sox17_18_mid
HMG_box_2
HMG_WDHD1
HTH_24
Motif
Other DBs
NCBI-GeneID:
128906294
NCBI-ProteinID:
XP_054049347
LinkDB
All DBs
Position
2:complement(43430758..43432432)
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AA seq
406 aa
AA seq
DB search
MSSPDAGYASSDDQAQGRCSLPIMMPAVGPCPWAESLSPLGEAKAKGEAAPSGAAGGRSK
SEARIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALSLSEKRPFVEEAER
LRVQHMQDHPNYKYRPRRRKQVKRLKRVESGFLQHGLAEAAGPGLGSEAGGGGRMCVEGL
GLPYAEQGYAAAGAGHYRDCPPLGAGFDGYSLPTPDPSPLDAAESEAPFFAAGLQEECSL
VPYGYAPHPAAEYPPAAAAAASESPAGAALRRHLPPGEALVPGGSLQGLLGCPAPLHAYY
GQACQPPGPGRGPPPLPPGAVGQPSPPPEAAPCREQLEHLPQEELLGEVDRTEFEQYLRF
ACKPELGLPFAGHEASGLAAPEGAGPISSAVSDASTAVYYCGYPDV
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgagcagccccgatgcgggctatgccagcagcgacgaccaggcgcaggggcggtgctcg
ctgcccatcatgatgccggccgtgggtccctgcccctgggcagagtcgctgagcccgctg
ggcgaggcgaaggcgaagggcgaggcggcgccgtcgggggcggcgggcggccggagcaag
agcgaggcgcggatccggaggcccatgaacgccttcatggtgtgggcgaaggacgagcgc
aagcggctggcgcagcagaacccggacctgcacaacgccgagctcagcaagatgctgggt
aaatcgtggaaggcgctgtcgctgtcggagaagcgtccgttcgtggaggaggcggagcgg
ctgcgggtgcagcacatgcaggaccaccccaactacaagtaccggccgcggcggcggaag
caggtgaagcgcctgaagcgggtggagagcggcttcctgcagcacggcctggcggaggcg
gcggggcccgggctgggcagcgaggccggcggcggcggcaggatgtgcgtggagggcctg
ggcctgccctacgcggagcagggctacgcggcggcgggcgcgggccactaccgggactgt
ccgccgctgggcgccgggttcgacggctacagcctgccgacgccggacccgtcgccgctg
gacgcggcggagagcgaggcgccgttcttcgcggcggggctgcaggaggagtgctcgctg
gtgccctacggctacgccccgcacccggcggccgagtacccgccggcggcggcggcggcg
gcgtccgagagcccggcgggcgcggcgctgcggcggcacctgccgcccggcgaggcgctg
gtcccgggcgggtcgctgcagggtctgctgggctgcccggcgccgctgcacgcctactac
ggtcaggcgtgccagccgccgggcccggggcgcgggccgccgccgctgccgccgggggcg
gtggggcagccgtcgccgccgcccgaggcggcgccgtgccgggagcagctggagcacttg
ccgcaggaggagctgctgggcgaggtggaccgcaccgagttcgagcagtacctgcgcttc
gcctgcaagcccgagctggggctgcccttcgcgggccacgaggcgtccgggctggcggcg
cccgagggcgcggggcccatctcctcggccgtgtcggacgccagcacggccgtctactac
tgcggctaccccgacgtgtga
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