KEGG   Rissa tridactyla (black-legged kittiwake): 128906511
Entry
128906511         CDS       T09443                                 
Symbol
FDFT1
Name
(RefSeq) squalene synthase isoform X1
  KO
K00801  farnesyl-diphosphate farnesyltransferase [EC:2.5.1.21]
Organism
rtd  Rissa tridactyla (black-legged kittiwake)
Pathway
rtd00100  Steroid biosynthesis
rtd01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:rtd00001]
 09100 Metabolism
  09103 Lipid metabolism
   00100 Steroid biosynthesis
    128906511 (FDFT1)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01006 Prenyltransferases [BR:rtd01006]
    128906511 (FDFT1)
Enzymes [BR:rtd01000]
 2. Transferases
  2.5  Transferring alkyl or aryl groups, other than methyl groups
   2.5.1  Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
    2.5.1.21  squalene synthase
     128906511 (FDFT1)
Prenyltransferases [BR:rtd01006]
 Terpene biosynthesis
  Squalene/phytoene synthase
   128906511 (FDFT1)
SSDB
Motif
Pfam: SQS_PSY SCC3_C HAUS4
Other DBs
NCBI-GeneID: 128906511
NCBI-ProteinID: XP_054049735
LinkDB
Position
3:complement(123476165..123490738)
AA seq 423 aa
MSAAPMELLRKWLGHPEDIYNLLRFKMGGYRAVMPRMDPDSLGRGLRTCYRYLNQTSRSF
AAVIQALDGELRHAVCIFYLVLRALDTIEDDMSISLDVKVPMLHEFHSYLYQPEWKYMES
KEKDRQVLEDFPTISMEFRNLSKVYQEVISDICHKMGVGMAEFLEKKVDSQHEWDKYCHY
VAGLVGIGLSRLFSASELEDPIIGQDTELANSMGLFLQKTNIIRDYLEDQLEGREFWPRE
VWSRYAKKLSDLAKPENIDMAVQCLNELITNALHHVPDVLTYLSRLKNQSVFNFCAIPQV
MAIATLAACYNNKQVFRGVVKIRKGQAVTLMMDATNIQAVKAIMYQYVEEIYQKIPSTDP
SSNKTQQVIASIRAMSLPGSPMASRHHYSPIYLSCAMLLAALSWQYLSTITKATEEYVQA
GEN
NT seq 1272 nt   +upstreamnt  +downstreamnt
atgagcgcggcccccatggagctgctgaggaaatggctgggccaccccgaggacatctac
aacctgctgcgcttcaaaatgggcggctaccgggccgtcatgccgcggatggacccggac
tcgctgggacgcggcctccggacctgctaccgctacctcaaccagacgagccgcagcttc
gccgccgttatccaggccctggacggagagctgcgacacgccgtctgtatattctaccta
gttctccgtgccctggacactatagaggatgacatgtccatcagcttagatgtgaaggtc
ccgatgctgcacgagtttcactcctatctttatcaacctgagtggaaatacatggagagc
aaggagaaggaccggcaggtgcttgaagacttcccaacgatctccatggagttcaggaac
ttgtcaaaggtttaccaggaggtgatttcagatatttgccacaagatgggcgtcgggatg
gcagagttcttggagaagaaggttgactctcagcatgagtgggataagtattgtcactac
gttgctgggctggtggggatcggcctttcccgtctcttctctgcatcagagctagaagat
cctatcatcgggcaggacacggagctggccaactccatgggcctcttcctgcagaaaacc
aacatcatccgtgactatctggaggaccagctggagggaagggagttctggcccagagag
gtttggagcagatacgcaaagaagctctcggatcttgccaaaccagagaacatcgatatg
gctgtccagtgtctgaatgagctcatcaccaatgccctccaccatgtccctgatgtcctc
acatacttatcccgcctgaaaaaccaaagcgtcttcaacttctgtgctatcccccaggtg
atggctattgccacgttggctgcctgctataacaacaagcaggtgttcaggggtgttgtg
aagatccggaagggacaagccgtcactctaatgatggatgccacaaacatacaagctgtc
aaagccattatgtaccagtatgtggaagagatctaccagaagatcccaagcacagacccg
tcatccaacaagacgcagcaggttatcgcctccatccgcgccatgagcttgcctggcagc
cccatggcatcgcgccaccactactcccccatctacctgtcgtgcgccatgctcctggct
gccctgagctggcagtacctgagcaccatcaccaaggccactgaggagtacgtccaggcg
ggcgagaactga

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