Rissa tridactyla (black-legged kittiwake): 128906531
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Entry
128906531 CDS
T09443
Symbol
HBS1L
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128906531 (HBS1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtd03019
]
128906531 (HBS1L)
Messenger RNA biogenesis [BR:
rtd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
128906531 (HBS1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
GIP1_N
DO-GTPase2
Motif
Other DBs
NCBI-GeneID:
128906531
NCBI-ProteinID:
XP_054049796
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All DBs
Position
3:64446170..64508771
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AA seq
687 aa
AA seq
DB search
MSRHRNVRGYNYDEDFEDDDVYGQSVEDDYCISPSTAAQFIYSRREKPATFAEPLEEEYG
YESTDDTADCFTSNHQLTEVDRARLNSCLDQMREVLAESVPEQTMVQAVLDSKFDVQKAL
DLVLSQGSKQNVKTKNEDAVIVGKTTKGKTRDSQSARMESEIVPKVTKMTVSGKKQSMGF
EVPCVIAEENGHANTPQKGPLTEDASVASGVLEAVSKSTLSSQVAQVSEEQNMVPSPVKK
SSKAKPQIDVKAELEKRQGGKQLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMHKYEQ
ESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETKTKVITLMDAPGHKDFIPNMIT
GAAQADVAILVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQER
FQEITSKLGQFLKQAGFKESDVAYIPTSGLGGENLVTRGQSSDLTQWYKGKCLLEQIDSF
KPPQRSVDKPFRLCVADVFKDQGSGFCVTGKIEAGYIQVGDRLLAMPPNETCTAKGITLH
DEPVDWAAAGDHVSLTLTGMDIIKINVGCVFCDPKEPIKVCTRFRARVLIFNIEVPITKG
FPVLLHYQTVSEPATIRRLLSVLHKSTGEVTKKKPKFLTKGQNALIELQTQRPVALELYK
DFKELGRFMLRYSGSTIAAGVVTEIKE
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggcacaggaacgtccgagggtataactacgacgaagattttgaagatgatgat
gtgtatggccaatcagtagaagatgattattgcatttctccttcaacagcagctcagttt
atctactccagacgagaaaaaccagcaacatttgctgagccactagaagaagaatatggc
tatgaaagtacagatgatactgctgattgttttacatccaaccatcagttgactgaagtt
gacagagcccgtcttaattcatgccttgatcaaatgagagaagttttggcagagtctgta
ccagagcaaacaatggtgcaagcagtactggatagtaaatttgatgtacagaaggctttg
gatcttgtgctttcacaaggcagtaagcaaaatgtgaagaccaagaatgaggatgctgtg
attgtaggaaagacgacaaaaggaaaaacaagggattcacagtcagccagaatggaatct
gaaattgtgccaaaggttaccaaaatgacagtgtctggaaagaaacaatctatgggattt
gaagttccatgtgtgattgctgaagaaaatggccatgctaacacacctcagaagggaccg
ttaactgaagatgccagtgtagcttctggggtacttgaggcagtctcaaaatctactctt
tcatcccaagtggcacaggtttcagaagagcagaatatggtgcctagtccagtaaaaaag
tcaagcaaggcaaaaccacaaatagatgtgaaagcagagttggagaagagacaaggagga
aagcaactgcttaatttggtggtaataggacatgttgatgcaggtaaaagtactttaatg
ggtcatctactctaccttttgggaaatgtgaacaaaagaactatgcacaaatatgaacag
gaatctaagaaggctggcaaagcttcgtttgcctatgcatgggtcttggatgaaactggt
gaagaaagagaaaggggagtgacgatggatgtgggtatgaccaaatttgagacaaagact
aaagtaattacactgatggatgctccaggccacaaagacttcattccaaatatgatcaca
ggagctgcacaggctgatgtggctattctggttgtggatgctagcagaggagagtttgaa
gcagggtttgagacaggtggacaaactcgagaacatggattattagtgcgctctcttgga
gtgacacagctagctgttgcagtcaataaaatggaccaggtcaattggcaacaggaaaga
tttcaggaaattacgagtaagctgggccagtttcttaaacaagctggctttaaggaatca
gatgtggcttatattccaacaagtggccttggtggtgaaaatttggtcacaaggggtcag
tcaagtgacctcacgcagtggtataaaggaaagtgtttgttagaacaaattgattccttc
aagccaccacagagatcagtggataaaccatttaggttgtgtgttgctgatgtttttaaa
gaccaaggatcaggattttgcgtgactggtaaaatagaagcaggctatattcaagttgga
gatcgacttctggcgatgcctcccaatgaaacttgcactgcaaaaggaatcacactgcat
gatgaaccagttgattgggctgcagcaggagatcacgttagtctcactttgaccggcatg
gatatcatcaaaatcaatgttggctgtgtattttgtgatcccaaggaaccgattaaagtt
tgcactcgtttcagagctcgggttctcatctttaacattgaggttccaatcaccaaagga
tttcctgtgcttttacactatcaaaccgtaagtgaacctgctactattagaagactgttg
agtgtcctgcacaaaagcactggtgaagtgacaaagaaaaaacctaagttcttgactaaa
ggacagaatgctctaatagaactacaaactcaaagacctgttgctctagagttgtataaa
gattttaaagagcttgggaggtttatgttacgctacagtggttctactattgctgcagga
gttgtcacagagattaaggaatga
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