Rissa tridactyla (black-legged kittiwake): 128906852
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Entry
128906852 CDS
T09443
Symbol
CDC40
Name
(RefSeq) pre-mRNA-processing factor 17
KO
K12816
pre-mRNA-processing factor 17
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128906852 (CDC40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rtd03041
]
128906852 (CDC40)
Spliceosome [BR:
rtd03041
]
Complex C
Other components
Step II factors
128906852 (CDC40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WDR55
EIF3I
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_TEP1_C
WD40_RFWD3
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_SPT8
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_NWD2_C
WD_LRWD1
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
128906852
NCBI-ProteinID:
XP_054050828
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Position
3:complement(76317921..76360385)
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AA seq
580 aa
AA seq
DB search
MSAAIAALASYGGSDSEPDSEPEAEGGSQRAAVLASRDAVLHLRPPPAAPPALAVDAAPE
VAVKEDVETGVHLDPAIKEVQYNPTYDTMFAPEFGPENPFRTQQMAAPRNMLSGYAEPAH
INDFMFEQQRRTFATYGYALDPSIDNPEVATKYIGSVEEAEKNQGLTVFETGQRKIEKRK
KFKENDASNIDGFLGPWAKYVDEKEVAKPSEEEQKELDEITAKRQKRGKVEDDKPGEEKT
ILHVKEMYDYQGRSYLHVPQDVGVNLRSTVPPDKCYLPKKQIHVWSGHTKGVSAVRLFPL
SGHILLSCSMDCKIKLWEVYGDRRCLRTFIGHSKAVRDICFNNAGTRFLSAAYDRYLKLW
DTETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLG
AVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQ
SMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDADGKLNIWDWKT
TKLYSRLKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcggcgatcgcagccctcgcctcctacggcggttccgactcggagcccgactcg
gagcccgaggccgagggcggctcccagcgcgccgccgtgctcgccagccgcgacgccgtg
ctgcacctccggccgccgcccgccgcccccccggctctggccgtcgacgcggccccggaa
gtagccgtgaaggaagatgtggaaacaggagtacaccttgatcctgctatcaaggaagtt
caatacaatcccacttatgataccatgtttgcacctgagtttggaccagaaaacccattt
agaactcaacagatggctgcacctagaaatatgctttctggatatgcagaaccagctcac
atcaatgatttcatgtttgaacaacaaagaagaacatttgcaacctatggttatgcatta
gatccctcaatagataaccctgaagttgctaccaaatatattggttcagtagaagaagct
gaaaaaaatcaaggtttaacagtgtttgaaacaggacaaaggaaaattgaaaaaaggaag
aaattcaaggagaatgatgcatctaatattgatggttttctgggaccatgggcaaagtat
gttgatgaaaaagaagtagccaaaccatcggaagaagaacagaaagagttggatgaaata
acagctaagaggcagaagagaggaaaagtagaagatgataaacctggagaggagaagact
atattacatgttaaggaaatgtatgactatcaggggagatcttatcttcatgtccctcaa
gatgttggagttaatctccgttctacagtgccacctgacaagtgctatcttccaaagaaa
caaatccatgtgtggtctggacatacaaagggtgtcagtgcagttagattgtttcctctc
tctgggcatatactgttgtcttgctctatggattgcaaaattaagctatgggaagtatat
ggcgatcgaagatgtctacgaacatttattggacacagtaaagctgttcgagacatctgt
tttaataatgctggcactcggtttcttagtgctgcatatgaccgctatcttaaactctgg
gacactgaaacagggcaatgtatttcaagatttacaaacaggaaggttccttactgtgtc
aagttcaatcctgatgaagataaacaaaatctctttgttgcaggaatgtcagataagaaa
atagtgcagtgggatattcgaagtggtgagattgtgcaggaatacgataggcatttggga
gctgtcaacaccattgtttttgtggatgaaaatagaaggtttgtgagtacatctgatgac
aagagtttaagagtctgggaatgggacattcctgtagacttcaagtacatagctgagcca
agtatgcattcgatgccagccgtgactttgtctccaaatgggaagtggttggcttgccag
tcgatggataaccaaattctgatttttggagcacagaacagattcagattaaacaaaaag
aagattttcaaaggtcacatggtagccggctacgcttgtcaagtggatttttcacctgac
atgagctacgtgatatctggagatgcagatggaaaacttaacatctgggactggaagaca
acaaaactctacagcagattaaaagcacatgataaagtctgtatcggtgcggtgtggcat
ccacacgaaacatctaaagtcattacatgcggctgggatggtcttattaaactatgggac
taa
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