Rissa tridactyla (black-legged kittiwake): 128907211
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Entry
128907211 CDS
T09443
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
128907211 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rtd03400
]
128907211 (MSH2)
DNA repair and recombination proteins [BR:
rtd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
128907211 (MSH2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_IV
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
128907211
NCBI-ProteinID:
XP_054051740
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Position
3:complement(14011361..14064958)
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AA seq
936 aa
AA seq
DB search
MAAEPPREVVWPEGAGAEAGFVRAVLSLPEKPDTTVRFFERGDYYTAHGADARLAARELF
RTRAVIRQLAGAPGTQKLESVVLSKMNFESFVRDLLLVRHYRVEVYKNKAGSKSVKENDW
YLAYKGSPGNLAQFEEVLFANNDMSTAIGVVGVKLSTADGQRVVGVGYVDTTLRKLSVCE
FPDNDQFSNLEALLVQLGPKECVLPGGETAGEMGKLRQVIQRGGILITDRKKADFTTKDI
VQDLNRLLKSKKEEQMNSAALPEMEKPVAVSSLSAIIKFLELLSDDSNFGQFELTTFDLS
QYMVLDNAAVQALNLFQSSVENANTAQSLAGLLNKCRTPQGQRLVNQWIKQPLMDKNRIE
ERLNLVEAFVGDPELRQCLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRMYQAINQLPNV
VQALEKHEGAHQMLLLAVFITPLNDIYSDFSKFLEMIETTLDMDKVENHEFLVKASFDPN
LTELREKMNELEEKMQSFLKSAAKELGLEAGKSIKLETNSQFGHHFRITCKEEKVLRNNS
KYGIVDTQKNGVKFTNSKLSSVNDEYIKNREEYEEAQDAIVKEIINIASGYAEPIQTMND
VIAQLDAIVSFAHVSNGAPVPYVRPVILEKGQGRIVLKGARHPCIEVQDEVAFIPNDITF
EKGKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCDSAEITIVDCILARVGAGDS
QLKGVSTFMAEMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAISEYIASKICAF
CMFATHFHELTALADQVPTVNNLHVTALTSDDTLTMLYRVKEGVCDQSFGIHVAELAAFP
KHVIESAREKALELEEFQNIGKSKESEGEPPAKKFYREREEGEKIIQDFLCQVKALPLTD
MSEDDIKIKLKQLRNDVLAKNNSFVNEIISRTKVTS
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggagccgccgcgggaggtggtgtggccggagggcgctggggctgaggcgggc
ttcgtgcgcgccgtgctgtcgctgcccgagaagcccgacaccaccgtgcgcttcttcgag
cgcggcgattactacacggcgcacggcgcggacgcgcggctggccgcccgcgagctcttc
cgcacccgcgccgtcatccgccagctggcgggggcaccgggaactcagaagcttgagagt
gttgtgcttagtaaaatgaattttgaatcttttgtgagagatctgcttctggttcgtcat
tacagagttgaagtttacaagaacaaagcagggagtaaatctgtcaaagagaatgactgg
tatttagcatacaagggttctccaggaaatcttgcccagtttgaggaagttctcttcgcc
aacaatgacatgtcaacggccattggggttgtgggggttaagctgtctactgctgatgga
caaagagtggtaggagtgggctatgtcgacacaaccctgagaaaactgagcgtctgtgag
tttccagataatgatcaattctcaaaccttgaagctctactggttcagctaggaccgaag
gagtgtgtgctaccaggaggagagactgcaggagagatgggaaaactacgacaagtcatt
cagaggggaggaatcctgattacagacagaaagaaggcagatttcacaacaaaagatatt
gttcaggatctcaatcgcctgttaaaatcaaaaaaagaagaacaaatgaacagcgcagca
ttgccggagatggaaaagccggttgctgtttcatccttgtcggccattatcaagttttta
gagttgttgtcagatgattctaactttggacaatttgaactgactacttttgatcttagt
caatatatggttctagataacgcagctgttcaagccctcaacctttttcagagttctgtg
gaaaatgctaatactgcacagtctctagctggtttactaaacaaatgcagaacccctcaa
ggacaaagactagttaatcagtggatcaaacaaccacttatggacaagaatagaattgaa
gaaaggctgaatttggttgaagcttttgtgggggatccagaactacgtcagtgccttcaa
gaagatctcttgcgtcgattcccagatcttaaccggctggcaaagaaatttcagagacaa
gcagcaaacttacaggactgttaccgaatgtatcaggctattaatcaactgcctaatgtt
gtacaagcactagaaaaacatgaaggagctcaccagatgttgttgttggcagtgtttata
acacctcttaatgatatctactctgacttctcaaagtttctggagatgatagaaacaaca
ttggacatggataaggtggagaatcatgaatttctcgtcaaggcttcttttgatcctaat
ttgacagaattaagagagaagatgaatgaactggaagaaaaaatgcagtcctttttaaag
agtgcagccaaagaactaggcttggaagctggcaaaagtataaaactggagacaaattca
cagtttggacatcactttcgaataacctgcaaggaggaaaaagttcttcgtaataattca
aaatatggaatagttgatacacagaagaatggtgtgaaatttacaaacagcaaactgagc
tccgtcaatgatgaatatataaagaacagagaagagtatgaagaggctcaggatgcaatt
gttaaggaaatcattaacattgcttcaggttatgcagaaccaatacagacgatgaatgat
gtaatagctcaattagatgcaattgtaagttttgctcatgtgtcaaacggagcaccagtg
ccgtatgtccgtcctgtcattctggaaaagggacaaggaaggatcgttctgaaaggtgcc
aggcatccctgcatcgaagtgcaagacgaggtggccttcatccccaatgacattacattt
gagaagggcaagcagatgttccacattattactggccctaacatggggggaaaatcaacg
tacatccggcaaacaggggtgattgttcttatggcccaaattgggtgttttgtaccatgc
gactctgcagaaataaccattgtggattgtatcctggctcgggtgggagctggagacagt
cagctgaaaggcgtgtctactttcatggcggaaatgttagaaactgcttcaatccttagg
acagcatctgaaaactccctgataatcattgatgagctgggaagaggaacttctacctac
gatggctttggcttagcatgggctatttcagaatacattgctagcaaaatctgtgctttc
tgtatgtttgctacacattttcatgaactgacagctcttgctgaccaagtgccaacagta
aataacctacatgttactgctctgaccagtgatgacacactgacgatgctttatcgtgtc
aaggaaggtgtttgtgaccagagttttggaatacatgtagcagagctggcggctttccca
aaacatgtgatagaaagtgcaagagagaaagcattggagctggaggagtttcaaaacatt
ggcaagtccaaggaatctgaaggagaaccaccagccaagaaattttacagagaaagagag
gaaggtgaaaagataattcaggattttctttgtcaagtgaaagcattgcccctgacagat
atgtcagaagacgacatcaaaatcaagctgaaacagctgagaaacgatgtgttggcaaag
aacaacagttttgtgaatgaaatcatttcccgaacgaaagttacatcgtga
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