Rissa tridactyla (black-legged kittiwake): 128907601
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Entry
128907601 CDS
T09443
Symbol
PRDM1
Name
(RefSeq) PR domain zinc finger protein 1 isoform X1
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rtd03000
]
128907601 (PRDM1)
Transcription factors [BR:
rtd03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
128907601 (PRDM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
SET
zf-C2H2_4
C2CH-3rd_BIRD-IDD
Zf-C2H2_ZNF451_C
zf-C2H2_jaz
zf-C2H2_6
zf-C2HE
zf-met
B129_C2H2-zf
Motif
Other DBs
NCBI-GeneID:
128907601
NCBI-ProteinID:
XP_054052616
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Position
3:complement(78280246..78563728)
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AA seq
822 aa
AA seq
DB search
MRIKGCFLIFQAATQCSSDAVSFKNLVKGREWTMKMDMEDADMTLWTEADFEEKCTYIVN
DHPLDPSADGGTLTQAEASLPRNLTFKYASNCKEVTGVISKEYIPKGTRFGPLVGEIYTS
DTVPKNANRKYFWRIYSSGELHHFIDGFNEDKSNWMRYVNPGYSVQEQNLAACQNGMNIY
FYTIKPIPANQELLVWYCRDFAERLHYPSSRELTMMNLTQTHVNPKQHSADKDELCQKSI
PKKEHSVKEILKMESNPPKGKDFFQTNISPVTPEKDLDDLRKNYSPERCFFPRVVYPIRP
HIPEDYLKASLAYGMDRPSYMTHSPIQTSTTPSPSGRSSPDQSLKSSSPHSSPGVTVSPL
APTSQEHREPYSYLNGSYGSEGLGSYPGYAPPGHLPPAFLPSYNPHYPKFLLPPFNMSCN
NLSALNNINGINNFNLFPRMYPLYGNLLSGGSLSHHMLNPATLPSSLPSEGGRRLLQPDH
PRDFLIPAPNSAFSITGAAASMKDKPCSPTSGSPTAGTAASSEHIMQPKPTSVVLAATGG
EEAMNLIKSKRNVTGYKTLPYPLKKQNGKIKYECNVCSKTFGQLSNLKVHLRVHSGERPF
KCQTCNKGFTQLAHLQKHYLVHTGEKPHECQVCHKRFSSTSNLKTHLRLHSGEKPYQCKL
CPAKFTQFVHLKLHKRLHTRERPHKCIHCHKSYIHLCSLQVHLKGNCPVAPASGLSMEDL
NRINEEIEKFDISDNADKLEEVEDNIDLTSIVEKDILTMLRREMEGANLKVSLQRNLGNG
LISSGCNLYESSDMSVMKLPHGHPLPLLPVKVKQETVEPMDP
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgaggattaaaggctgttttcttattttccaggctgctacacagtgtagctcggacgct
gtgagtttcaagaatctggtgaaagggagagagtggacaatgaaaatggacatggaggat
gcagacatgactctgtggacggaagccgattttgaagagaagtgcacatacattgtaaac
gatcacccgttggatcccagtgccgatggaggcaccctaactcaggcagaggcttccttg
ccaaggaacttgactttcaaatatgcatctaactgcaaagaggtcactggagttataagc
aaagagtacatcccaaaaggaacgcgctttggacccctggtaggagagatctataccagc
gatacggttcccaagaatgcgaacagaaaatacttttggcggatctattcaagtggtgag
cttcaccatttcattgacggatttaacgaggacaagagcaactggatgcgttatgtaaac
cctggctactccgttcaggaacagaacttggctgcttgtcagaatggaatgaacatttac
ttctacaccatcaagcccatccctgccaaccaagagctgcttgtgtggtattgccgggac
tttgcagagaggctgcactatccctcctccagagagctgacaatgatgaacctcacacaa
acccacgttaatccaaagcagcacagtgctgataaagatgagctctgtcagaaaagcatc
ccaaagaaggagcacagtgtgaaagaaatcctgaaaatggaatccaatcctccaaaagga
aaagacttcttccagaccaacatttcaccagttactccagaaaaagacttggatgatttg
cgtaagaactatagcccggagaggtgtttcttccctcgagttgtctacccgatccgacct
cacattccagaagactatctgaaagcttccttagcgtatgggatggacagacccagctac
atgactcactcgcccatccagacgtctacgacaccgagtccttctgggaggagcagccca
gaccaaagtttaaaaagttcaagccctcacagcagtccaggggtcacggtttcacctctg
gcacctacttcccaagagcacagagagccatactcttacttgaatggatcatatggctca
gaaggattggggtcttatcctggatacgcaccccctggccacctcccacctgcctttcta
ccgtcctataacccccactaccccaaattcctgttacctccgttcaatatgagctgtaat
aacctgagcgctttgaacaatatcaatggcatcaacaatttcaatctcttcccaaggatg
tatcctctttatggcaacctgctcagcggaggtagcctttcccaccacatgttgaacccc
gccacgctccccagttcactgcccagtgaaggaggccgtcgcttgctgcagcctgatcat
ccgagagacttcctcataccagcacctaacagtgccttctctatcacgggcgctgctgcc
agcatgaaggacaagccatgcagccccaccagcgggtcacccacagctggtacagcagcc
agttcagaacacataatgcaacctaaacctacctcagtggtgttggctgccaccggcggt
gaagaagccatgaatctcattaaaagtaagaggaatgtgaccggttacaaaaccctccca
tacccactgaagaagcagaacgggaagatcaagtatgaatgcaacgtctgctccaagacc
tttggccagctctccaacctgaaggtgcacctccgagtacacagcggagagagacccttt
aaatgccagacttgcaataaaggcttcacgcagctggctcacctccagaagcactatctg
gtacacacgggagagaaaccccacgagtgtcaggtttgtcacaagcggttcagcagcacc
agcaatctcaaaacccacctgcggctccactctggagagaagccttaccagtgcaagctc
tgccccgccaaattcacccagtttgtgcacctgaagctgcacaagcgtctccacacccgg
gaacgtccccataaatgcatccactgccacaagagctacattcacctctgcagcctccag
gtccacctgaagggcaactgccccgtcgcccctgcctccggcctctccatggaggacctg
aatcgaatcaacgaggagatcgagaagttcgacatcagcgacaatgctgacaagttggaa
gaagtggaggacaatatcgacttgacatcgatcgtggagaaggatatactgaccatgctc
aggagggaaatggaaggagctaatctgaaagtgtctctacagaggaacctgggaaacgga
cttatctcctcaggatgcaacctttacgagtcgtcagatatgtcagttatgaagttgcct
cacggtcacccactacctctgttacctgtaaaggtcaagcaagaaacagttgaaccgatg
gacccttaa
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