Rissa tridactyla (black-legged kittiwake): 128907793
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Entry
128907793 CDS
T09443
Symbol
TRIM54
Name
(RefSeq) tripartite motif-containing protein 54 isoform X1
KO
K10653
tripartite motif-containing protein 54
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
128907793 (TRIM54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rtd04121
]
128907793 (TRIM54)
Ubiquitin system [BR:
rtd04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
128907793 (TRIM54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_2
RING_XB3-XBAT31
zf-C3HC4
zf-RING_5
zf-B_box
zf-RING_2
zf-C3HC4_4
zf-RING_6
zf-C3HC4_3
TRIM_CC
Sina_RING
CYP38_PsbQ-like
DUF5799
Prok-RING_4
Zn_ribbon_FGT1_2
RHH_9
CoiA_N
CagA
FlgN
Motif
Other DBs
NCBI-GeneID:
128907793
NCBI-ProteinID:
XP_054053019
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All DBs
Position
3:complement(127334867..127338286)
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AA seq
413 aa
AA seq
DB search
MNFAVGLKPLLAEARSMESLEKQLICPICLEMFTKPVVILPCQHNLCRKCANDVFQASNP
LWQSRGSSAVPSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESARPLHAKA
EQHLMCEEHEDERINIYCLRCEAPTCSLCKVFGAHKDCEVAPLPAVYQRQKVGALGGGMV
GPAGGSGVARPAGPHAPSCPPPAQSELSDGIAMLVAGNDRIQAIITQMEEICHTIEENGR
RQKQHLGLRFDSLYGILEERKKELLQSIAREQEEKVQRVRGLIRQYGDHLEASSKLVESA
IQAMEEPQMAVYLQHSKELLKKITDMSKVSMSSRPEPGYENMDHFSINVDYVAEMLRTIE
FQTEPLGEEEADGPGDGSEATADEDRLDSLEGPEAVEDVGPRQKPASSPHGQH
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcgcggtggggctgaagccgctgctggcggaggcgcggagcatggagagcctg
gagaagcagctcatctgccccatctgcctggagatgttcaccaagcccgtggtcatcctg
ccctgccagcacaacctctgccgcaagtgcgccaacgacgtcttccaggcctccaacccg
ctgtggcagtcgcggggctccagcgcggtgccgtcgggcggccggttccggtgcccgtcg
tgccgccacgaggtggtgctggaccggcacggggtgtacgggctgcagcggaacctgctg
gtggagaacatcatcgacatctacaagcaggagtcggccaggcccctgcacgccaaggcc
gagcagcacctcatgtgcgaggagcacgaggacgagcggatcaacatctactgcctgcgc
tgcgaggcgcccacctgctccctctgcaaggtctttggggcgcacaaggactgcgaggtg
gccccgctgcccgccgtctaccagcgacagaaggtgggcgccctggggggggggatggtg
gggccagcagggggctcgggggttgcccgtccagccggccctcatgccccgtcctgtcca
ccccccgcccagagcgagctcagcgatggcatcgccatgctggtggcggggaacgaccgc
atccaggccatcatcactcagatggaggagatctgccacaccatcgaggagaacggccgg
cggcagaagcagcacctggggctgcgctttgactcgctgtacggcatcctggaggagcgg
aagaaggagctgctgcagagcatcgcgcgggagcaggaggagaaggtgcagcgcgtgcgg
ggcctcatccgccagtacggcgaccacctggaggcctcctccaagctggtggagtcagcc
atccaggccatggaggagccgcagatggccgtgtacctgcagcactccaaggagctcctg
aaaaagatcacggacatgtccaaggtgtcgatgagcagccgcccggagcccggctacgag
aacatggaccacttctccatcaacgtggactatgtggcagagatgctgaggaccatcgag
ttccagacagagcccctgggcgaggaggaggcagacggacctggcgatggcagcgaagcc
acggcagacgaggaccggctggacagcctggaggggcccgaagctgtggaggatgtgggg
ccgaggcagaaaccggcgagttctccccatggtcagcactga
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