Rissa tridactyla (black-legged kittiwake): 128908584
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Entry
128908584 CDS
T09443
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128908584 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtd03019
]
128908584 (EDC4)
Messenger RNA biogenesis [BR:
rtd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128908584 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
128908584 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
Beta-prop_EDC4L
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_HPS5
WD40_Prp19
WDR55
NBCH_WD40
Uteroglobin
Motif
Other DBs
NCBI-GeneID:
128908584
NCBI-ProteinID:
XP_054055096
LinkDB
All DBs
Position
4:72257756..72296604
Genome browser
AA seq
1402 aa
AA seq
DB search
MASSSSIDIEDATQHLRDILKLDRPGGSVNENQRPSNSYNGDLNGLLVPDPIVAGDGPSL
AKPVHRSISLGALQEKQVICLSGDDSSTCVVISAKDVEIVASSDSSITSKARGSNKVKIQ
PVARYDWEQKYYYGNLIAVSNSYLAYAIRVASNGSAMVRVLSVSTAERTLLKGFTGGVAD
LAFAHLNSNQLACLDEAGNLFVWRLAMDKEKIQEEILVNIKRPDNTPLNTSRRIIWCPFI
PDDNEESGEEGSQTLALLHEDRAEVWDLDIIRTNNSSWPVEVPSIKEGFIVVKGHSTCLS
EGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQD
PEVPFWRFLITGADQNRELKMWCTVSWTCLQTVRFSPDIFSSMSILPSLKVCLDLSAEYL
ILSDVQRKVLYVMELMQNQEEGKAYFSSISEFLLTHPVLSFGIQAVSRCRLRHTEVLPAE
EENDNLSVEGAQGAGAVESAAGVLIKLFCVHTKALQDVQIRFQPLHSPDMSASMPSHSSH
EEFAFPDHMADLSTEGLGSEKGSVHGSQPDLRRIADLPVPADFLSLSNDAKPKLMTPDAF
MTPSTSLQQIAVSPGSSVSSLTAVTAMSSTSVTDASMPRPSEDLTVSPKMQLDTSLTLSS
SSSSLQTSPRSHSVLIPGLPDKLTPKAPVPVTPGNPSLALELQEVEPLVVPQASPTRERS
PDVISSASTAMSQDIPEIASETLQRSFAAAPSGLPAEVLEPSHHADSMASAASALHLLSP
RNRHNSEHSHHSLDMPPVEVDRLNAPSLLETALTQENASSDSVVSQPWPAAPDITRETRN
SMADSPRDEVEEKHKSSSYHRHSYHLLQHDSQDASAEQSDHDDEVASLASTSGGFGAKAS
TQRLPVKDWKAKASPRASPKLKRKGKKDDGDMNQSPRSSNNQVTPEFQDELMCILRSQQR
ELSELRQNQMELLQRLTDHLDAIQSSLMGHVERVIDSQQEQEQRRLDRALTEGQQRNGQL
QEHLSQQLSQSLSTAVCNRLERTVREEMKKTVPQCISKSVDPIAGQLSNTIAAKLTAVEG
TLKESITKLVKSKNLTDAVVRATADTLQGPIQAAYREAFQSVVLPAFEKSCQSMFQQIND
TFKQGTQEYVQQLETHLKNKKVREQEARDPLLNQLRQLISTFQSSTEQLAATVAASVHAE
VQHQLHIIVGNMQESILAQVQRVIKGEVSLAMKEQQAAVTSSIVQAMRSAAGTPIPSAHL
DFQSQQTHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDTQQVFGQHPCPLSQPVLL
SLIQQLSSDLGTRTELKLNYLEEAVMHLDHSDPITRDHMGSVMNQVRQKLFQFLQVEPHN
NLSKPARRLMIMLQGLVTPGMT
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctcctccagcatcgacatcgaggacgcgacccagcacctgcgggacatcctc
aagctggaccgaccgggaggttcagtgaatgagaaccagagaccgtcaaattcgtataat
ggagacctgaatggactgctggtgccagatcccatcgtggccggagatggaccttctttg
gctaagccagtgcatcgcagcatttctctgggagccctgcaggagaagcaagtcatctgc
ctttctggtgatgacagctccacttgcgtagtgatatcagcaaaagatgtggagatagtg
gccagcagtgattccagcatcaccagtaaggccagagggagtaacaaggtgaaaatacag
cctgtggctagatatgactgggagcagaaatactattatggcaatctgatagctgtttca
aactcttacctggcttatgccattagagttgccagcaacggctccgctatggtgcgggtg
ttgagtgtcagcactgctgagcggaccttgctgaaaggattcacaggcggtgtggcagac
ctggcttttgctcatctcaactccaaccagctggcgtgcctggatgaggctggcaacctt
tttgtctggcgcctggctatggataaagaaaaaatccaagaggagatcttggttaacatc
aagcgacctgacaataccccgttgaacacctctcgaagaatcatctggtgccctttcatc
ccagatgataacgaggagagcggtgaagagggaagtcagacgttggcgttgttgcatgag
gatagggcagaggtgtgggatttggacattatccgaacaaacaacagctcctggccggtg
gaagtgcctagcatcaaagaaggcttcatcgtagtgaaaggccacagcacgtgcctgagc
gagggagcactttctccagatggaactgtgttggctacagcaagccatgatggttttgtc
aaattctggcagatctatattgaggggcaagatgagccaaggtgtcttcatgagtggaaa
ccccatgatgggaggcctctttcctgcctgctcttctgtgacaaccataaaaagcaagac
ccagaggttcccttctggagatttctcatcacaggagcagatcagaatagagaactgaag
atgtggtgcactgtgtcttggacttgtctacaaactgtccgcttttctcctgacatcttc
agctccatgagtattcttcccagcctgaaagtctgcctggacctctcagctgaatatctg
atactgagcgatgtgcagagaaaagtcttgtatgtgatggagctgatgcagaaccaagag
gagggcaaagcttacttcagctccatctcagagttcctcctcacccacccagtcctaagc
tttggcatccaggcagtgagccgctgtcggttaaggcacaccgaagtgcttccagcagaa
gaggaaaacgacaacttgagtgtagaaggtgctcagggagctggggctgtggaatcagca
gcaggcgtgctgataaaactcttctgtgtgcacaccaaggccctacaggatgtgcagatt
agattccagcctcttcatagccctgacatgagtgcatccatgccttctcacagctctcat
gaagaatttgcctttccagaccacatggctgatctaagcacagaagggctgggatctgaa
aaaggctcggtgcacggctctcaaccagatctgcggcgtattgctgatctgcccgtacca
gcagacttcctttctctctcaaatgatgctaagcccaagctgatgactccagatgcgttc
atgacaccgagtacatctcttcaacagatcgctgtgtctccgggcagcagcgtcagttcc
ctgacggcagtcacagccatgagcagcacttctgtcacggatgcctctatgcccaggccg
tcggaagacttgactgtgagcccaaagatgcagctggacaccagcctgacactgagcagc
agtagcagcagtctccagactagccctaggagccattcggttcttatcccaggcctccct
gacaagctaacgccaaaggcacctgttccagtcacgccaggaaacccctctctagcactg
gaactgcaggaggtggagcccttggtggtgccccaggcttctcccacccgcgagcgctcg
ccagacgtcatttcctctgcctccacagccatgtcccaggatatcccagagattgcttcc
gagactttgcaacgcagctttgcggcagctccgtctgggctccctgcggaggtgctggag
cccagtcatcacgcagacagtatggcatccgctgcctcagctttgcatttgctgtctccg
aggaaccggcacaattccgagcacagccaccactctttggacatgcctccagtggaggtg
gacagactgaatgctccatcgttactggagactgctttaactcaggaaaatgcatcttct
gacagtgtcgtgagtcagccgtggccagcagctcctgacataaccagagaaaccaggaac
agcatggcagacagcccaagggatgaggttgaagaaaagcacaagagctcttcctatcat
cggcacagctaccacctgctgcagcatgacagccaggatgctagtgcagaacaaagtgac
catgatgatgaagttgcaagcttggcttctacgtcaggtggatttggtgccaaagcgtct
acgcagaggctgcctgtgaaggactggaaagccaaggcgtccccccgggcttccccaaag
ctaaagcggaagggcaagaaagatgacggggatatgaaccagtcgccaagatcctctaac
aaccaggtgacaccggagttccaggatgagctgatgtgcatactgaggagccaacagcgg
gagctctccgagctgcgtcagaaccagatggagctgctgcagagactcacggatcacctt
gatgccattcagagctcccttatgggccatgtggagagggtgattgactcccagcaggag
caggaacagagaagactagaccgagcactgacggaaggacagcagcgcaatgggcagctc
caggagcatctgtctcagcagctctcccagtccctttccactgctgtgtgtaaccgtctg
gagaggaccgttcgcgaggagatgaagaagaccgtaccccagtgcatttccaagagtgtg
gaccctattgctggccagctaagtaacactattgctgccaagctgactgctgttgagggg
acgctgaaggagagtatcaccaagctagtgaaatcaaagaaccttacagatgctgtcgtg
agggcaacggctgataccctgcaggggccgatccaggcagcctacagggaagcgtttcag
agcgtcgtgctgccagccttcgagaagagctgccagtccatgttccagcaaatcaatgac
accttcaagcagggcacacaggaatatgtccagcagctcgagactcacttgaagaacaag
aaagtacgagaacaggaggcccgggacccgctgctgaaccagcttcgacagctcataagc
accttccagagcagcaccgagcagctggctgccactgtcgcagccagcgtccatgctgag
gtgcagcatcagctgcatattatcgtgggcaacatgcaggagtctattttggcccaggtg
cagagggtcattaaaggagaagtgagcctggctatgaaggaacagcaagcagctgtcacc
tcgagcatcgtccaggcaatgcgctcggcggccgggactcccatcccctctgctcacttg
gatttccagtctcagcaaactcacatccttcagctgctccagcagggacacctcaaccaa
gctttccagcaggctctaacagcagctgatctcaacctggtcctgtacgtctgcgagacc
gtggatactcagcaagtattcggccagcatccgtgcccgctgtcccagcctgtgctgctc
tctctcattcagcagctctcctccgatttgggtactcgcacggaactgaagctgaattac
ttggaggaagcggtgatgcacctggaccacagtgaccccatcacccgagaccacatgggg
tcagtcatgaaccaggtgcggcagaagctcttccagtttctccaggtggaaccccacaac
aatctgagcaagcctgcccgtcgcctcatgatcatgctccagggcctggtcacccctggc
atgacctag
DBGET
integrated database retrieval system
