Rissa tridactyla (black-legged kittiwake): 128908697
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Entry
128908697 CDS
T09443
Symbol
HIF1A
Name
(RefSeq) hypoxia-inducible factor 1-alpha
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd04137
Mitophagy - animal
rtd04140
Autophagy - animal
rtd04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
128908697 (HIF1A)
04137 Mitophagy - animal
128908697 (HIF1A)
04148 Efferocytosis
128908697 (HIF1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rtd03000
]
128908697 (HIF1A)
Transcription factors [BR:
rtd03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
128908697 (HIF1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
PAS
HIF-1
PAS_9
PAS_4
HLH
DUF4350
Motif
Other DBs
NCBI-GeneID:
128908697
NCBI-ProteinID:
XP_054055379
LinkDB
All DBs
Position
4:complement(65201513..65236022)
Genome browser
AA seq
811 aa
AA seq
DB search
MESPGGVTDKKRISSERRKEKSRDAARCRRSKESEVFYELAHQLPLPHTVSAHLDKASIM
RLTISYLRMRKLLDAGELETEAKMEKELNCFYLKALDGFVMVLSEDGDMIYMSENVNKCM
GLTQFELTGHSVFDFTHPCDHEELREMLTHRNGPVKKGKEQNTERSFFLRMKCTLTSRGR
TVNIKSATWKVLHCTGHIRVYDTCGNQTHCGYKKPPMTCLVLICEPIPHPSNIEVPLDSK
TFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQV
TTGQYRMLAKQGGYVWVETQATVIYNTKNSQPQCIVCVNYVLSGIVQKDLIFSLGQTECM
LKPVESPDMKMTKIFSKDDLDDTNSLFEKLKQEPDALTVLAPAAGDTIISLDFSSNESDE
QQCDEVPLYNDVMLPSSSEKLQNINMAMSPLPASETTKPLRSNADPALNREVVSKLEPNT
EPLELSFTMPQVQEQPTSPSDASTSQSSPEPSSPNNYCFDVDNDMANEFKLELVEKLFAI
DTEAKNPFSTQETDLDLEMLAPYIPMDDDFQLRSFDQLSPLESSSSGSQSAATVTIFQQT
QTPSSTADEIKPVTERVDDVKTLIVPSSPVHIINETSSAPASPYSGNRSRTASPVRAGKG
TLDQTEKSCPGAPSLLTVTLNKRSTAVDEELNPKMLALHNAQRKRKMEHDGSLFQAVGIG
SLFQQTGDRGGNASLAWKRVKGCKTNGHNGVEQKTIILLSTDIASKLLGQSMDESGLPQL
TSYDCEVNAPIQGNRNLLQGEELLRALDQVN
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atggagagccccggcggcgtcaccgacaagaagaggattagctcggaacgcagaaaagag
aagtcaagggatgcagcccggtgccgaaggagcaaggaatcagaagtattctatgagctt
gctcatcagctgccgctgccccataccgtgagcgcacacctggacaaggcgtccattatg
agactgactatcagctacttgcgcatgagaaagctgctagatgctggtgagctggagacc
gaagccaaaatggagaaggaactgaactgtttctacttgaaagctcttgatggatttgtc
atggttctgtccgaagatggagacatgatttacatgtctgaaaacgtgaacaagtgtatg
ggactcactcagtttgagttgacggggcacagtgtatttgatttcactcatccatgtgac
catgaagagctgcgagaaatgcttacacacagaaatggtcctgtgaaaaagggcaaagag
caaaacacggagcgcagcttttttctcagaatgaagtgtacactgactagcaggggaaga
acagtgaatataaagtctgctacgtggaaggtactccactgcactggacacattcgtgta
tatgacacatgcggtaatcaaactcactgtggctacaaaaagcctcccatgacgtgtctg
gtgttgatctgtgaacctattcctcatccatcaaacattgaggtccccttggacagtaaa
acgttcctcagtcgtcacagtcttgatatgaaattttcctattgtgatgaaagaattaca
gagttgatggggtatgagccagaggaactcctgggtcgctcaatctatgagtactatcat
gcgctggattctgatcatctgaccaaaacacaccatgacatgttcacaaaagggcaggtg
acaacaggacagtacagaatgcttgctaaacaaggtggctatgtctgggttgaaactcaa
gcaactgttatatacaacactaagaattctcagccacagtgcatagtgtgtgtaaactat
gtgttgagtggaattgttcagaaggacttgattttttcccttggacaaactgagtgtatg
ctgaaaccggtggagtctcctgatatgaaaatgaccaaaatattcagcaaagatgacctg
gatgataccaacagcctatttgaaaaacttaaacaggaaccagatgctttaactgtgctg
gctccagcggctggagacacaattatctctctagatttcagcagtaatgagtctgatgaa
caacaatgtgatgaagttcctttgtataacgatgtaatgctcccctcatccagtgagaaa
ttgcagaatataaatatggcaatgtccccactacctgcctctgaaactacaaagccactt
cgtagcaatgctgatcctgcactcaatagagaagttgtatcaaagctggagccaaacaca
gagccactcgaactttcttttaccatgcctcaggtgcaagagcaaccaaccagtccttct
gatgcaagtaccagccaaagttcacctgagcccagtagtcccaacaactactgctttgat
gtggataatgatatggctaatgaattcaaactggaattagtggagaaactctttgcgata
gatacagaagcaaaaaatccgttctctactcaggaaactgatttagatttggagatgttg
gctccttacatcccaatggatgatgacttccagctgcgatcctttgatcagctatctccg
ctggaaagcagttcttccggctctcaaagtgcagccaccgttaccatatttcagcagact
caaacaccatcaagtactgctgatgaaataaaaccagtgacagaacgtgtggatgacgtg
aagacgttaattgttccttcatctcctgtccacataatcaatgaaacgagtagtgcccca
gcatcaccttacagcgggaacaggagtcgaactgcgtctccagtcagagcaggaaaaggg
acattggatcagacggaaaaatcttgtccgggagcacccagtttgctaacagtcactctg
aataaaagatctactgcagtggatgaagaactaaatccaaagatgctagctttgcataat
gctcagagaaaacgaaaaatggaacatgatggttcactttttcaggcagttggaattggg
tctttattccagcagacaggtgaccgtggaggaaatgcatcacttgcttggaaacgtgta
aagggatgcaaaacaaatggtcataatggagtggagcaaaagacaatcattctactatca
actgacatagcaagtaaacttctagggcagtcgatggatgaaagtggactaccccaactc
acgagttacgattgcgaagtaaatgctcccatacaaggcaacagaaacctgctacagggt
gaagaactgctcagagctctggatcaagttaactga
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