Rissa tridactyla (black-legged kittiwake): 128908978
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Entry
128908978 CDS
T09443
Symbol
PRPF39
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rtd03041
]
128908978 (PRPF39)
Spliceosome [BR:
rtd03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
128908978 (PRPF39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_16
TPR_12
Mad3_BUB1_I
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
128908978
NCBI-ProteinID:
XP_054055998
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All DBs
Position
4:67847541..67862631
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AA seq
669 aa
AA seq
DB search
MENAENTEEEKPTVSNDSIDNGTETATEEQHMDFSTEIMSVTEMEQSPDSSPDLNEENTQ
ESEIPNIESLQTTDIEACFPPDFDKFWKVVEDNPQDFTGWVYLLQYVEQENHLPAARKAF
DRFFTHYPYCYGYWKKYADLEKRHDNVKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLD
PADPETNSTIRGAYEHAVLAAGTDFRSDRLWEMYINWENEQGNLREVTSIYDRILGIPTQ
LYSHHFQRFKEHIQNNLPRDLLTTEQFVQLRRELASVNGHNGEDVQSGDDLPSGTEDITD
PAKLITEIENMRHRIIEIHQEMFNHNEHEVSKRWTFEEAIKRPYFHVKPLEKIQLKNWKE
YLEFEIENGTHERVVVLFERCVISCALYEDFWIKYAKYMENHSIEGVRHVYSRACTIHLP
KKPMVHMLWAAFEEQQGNIDEARRILKTFEECILGLAMIRLRRVSLERRHGNMEEAEHLL
EDAVRNAKSVSESSFYAIKLARHLFKVQKNLPKARKVLSEAIEIDKENTKLYLNLLEMEY
SGDLKQNEENILSCFDKAVNGALSIKMRITFSQRKVEFLEDFGSDVNKLLDAYDEHQALL
KEQDSLKRRAENGSEEPDEKKMLTDDPTLASAQMMDGDMQVNQAAYNYNAWYQYNYQNAW
NYGQYYHPT
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggagaacgcagaaaatacagaggaggagaagccgactgtaagcaatgacagcatagac
aatggcactgaaacggcaacagaagaacagcatatggacttcagtacagaaattatgagt
gtaactgagatggaacagtcgcctgatagttcccctgacttgaatgaagaaaacacgcag
gagagtgaaattccaaatattgaaagtttacagacaacagatattgaggcttgcttccct
ccagattttgacaagttttggaaagtagtagaggacaatccccaggatttcacaggatgg
gtatatctactacagtatgtagagcaggagaaccacctaccagctgccaggaaagcattt
gacaggtttttcacgcattatccatattgctatggatattggaaaaagtatgcagacctt
gaaaagcgacacgacaacgttaagcagtctgatgaggtttatcgcagagggcttcaggca
attcctcttagtgttgatctttggatacattatataaacttcttaaaggagaccttggac
cctgctgatcctgaaactaacagtactattcgaggagcatatgaacatgcagtgttagct
gctgggacagatttccgttctgacagactatgggaaatgtatataaactgggaaaatgaa
cagggaaacctaagggaagttacatccatctatgaccgcatccttggaattccaacacaa
ctctacagtcatcacttccagaggtttaaagagcacatacagaacaacttgcctcgagat
cttctgactactgagcagtttgttcagctgcgcagagaactggcgtctgtgaacggccat
aacggggaggatgtgcaatctggagatgacctgccctctggtactgaagacataactgac
cctgccaagctaatcactgagatcgaaaacatgaggcacaggatcattgagattcatcaa
gaaatgtttaaccacaacgaacatgaagtcagtaagaggtggacatttgaagaagcgata
aagaggccttactttcatgtaaaacccctggagaaaattcagctgaaaaactggaaagag
tacttagaatttgagatagaaaatggcactcatgaacgagttgtggtcctctttgaaaga
tgtgttatttcatgtgccctctatgaggacttctggattaagtatgccaaatacatggag
aatcatagtattgaaggagtgaggcatgtctacagcagggcttgcacaatacaccttcct
aagaaaccaatggttcacatgctgtgggctgcctttgaggagcagcagggcaacattgat
gaagcaagaagaatcttgaaaacatttgaagagtgtattctagggctagcaatgattcgt
ttgcgaagagtaagcttagaacgcagacatggaaacatggaagaagctgaacacctgctt
gaagatgctgttaggaatgccaaatcagttagtgaatcgtcgttttatgccatcaaatta
gctcggcacctcttcaaagtacagaaaaatcttccaaaggcaagaaaagtgctgtcagaa
gccatagaaattgacaaagaaaatacgaaactctatctcaacttacttgaaatggagtac
agcggcgatctcaagcaaaatgaagaaaacatcctgagctgttttgataaagctgtcaac
ggcgcattatctataaaaatgagaattacgttttctcagcgaaaagtggaatttctggaa
gattttggttctgatgtaaacaagcttctggatgcctatgatgaacatcaagcccttctg
aaggagcaggattctttaaagaggagggcagagaacggatcagaggagccagatgaaaag
aaaatgctcacagacgacccaactttggcatcagcacagatgatggacggagacatgcaa
gtcaaccaggccgcgtataactacaacgcctggtaccagtacaattaccagaatgcctgg
aattacggacagtattatcatccaacttga
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