Rissa tridactyla (black-legged kittiwake): 128909293
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Entry
128909293 CDS
T09443
Symbol
SOX6
Name
(RefSeq) transcription factor SOX-6 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rtd03000
]
128909293 (SOX6)
Transcription factors [BR:
rtd03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
128909293 (SOX6)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
128909293
NCBI-ProteinID:
XP_054056732
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All DBs
Position
4:complement(15232196..15610250)
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AA seq
817 aa
AA seq
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MPSNSEVLAGVVGESRTEEWKNSHYIRMSSKQATSPFACAADGEETMTQDLASRDKEEGN
SDQHATSHLPLHNVMHNKPHSEELPTLVTTIQQDPEWDGVISAQHRMESESNKLCSLYSF
RNTSTSPNKPDEGGRDRSELMTSVNFGTPERRKGSLADVVDTLKQKKLEEMTRTEQEDSS
CMEKLLSKDWKEKMEKLNTSDLLGEIKGTPESLAEKERQLSTMITQLISLREQLLAAHDE
QKKLAASQIEKQRQQMDLARQQQEQIARQQQQLLQQQHKINLLQQQIQQVQGHMPPLMIP
IFPHDQRTLAAAAAAQQGFLFPPGITYKPGDNYPVQFIPSTMAAAAASGLSPLQLQQLYA
AQLASMQVSPGAKMPSTPQPPNTTGALSPTGMKNEKRGTSPVTQVKDEAAQPLNLSARPK
TAEPVKSPTSPTQNLFPASKSSPVTVTNKSGIPSPLGGSLGRGSSLDILSSLNSPALFGD
QDTVMKAIQEARKMREQIQREQQQQQQPHGVDGKLPSMNNMGLNNCRNEKERTRFENLGP
QLTGKPNEDGKLGPGVIDLTRPEDAEGSKAMNGSAAKLQQYYCWPTGGATVAEARVYRDS
RGRASSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYY
EEQARLSKIHLEKYPNYKYKPRPKRTCIVDGKKLRIGEYKQLMRSRRQEMRQFFTVGQQP
QIPITTGTGVVYPGAITMATTTPSPQMTSDCSSTSASPEPSIPVIQSTYGMKTDSGSLAG
NEMINGEDEIEMYEDYEDDPKSDYSSENEAHEAVSAN
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgccatcaaactctgaagtgctggctggtgtggtaggagaaagcaggacagaagagtgg
aagaacagccattatataagaatgtcttccaagcaggctacctctccatttgcatgtgca
gctgatggagaggaaacaatgacccaggatttagcatcccgagacaaggaagagggcaac
agtgatcagcatgcgacctcccacctgcctctgcataatgtaatgcacaacaaacctcac
tctgaggagctaccaactctggtcacgaccatccaacaagacccggagtgggatggagtc
atctcagcccaacacagaatggagtcagagagtaataagttatgttccctatattccttc
cgaaatacctctacctcaccaaacaagcccgacgaaggaggtcgtgaccgcagtgagcta
atgaccagtgttaattttggaacgccagaacgccgcaaaggaagccttgcagatgtggtg
gacacactgaagcagaagaaactagaagaaatgaccaggactgagcaagaggattcatcc
tgcatggaaaagcttctttctaaagactggaaggagaagatggaaaaattaaacacaagt
gatctccttggagaaatcaaaggtacaccagaaagcctggcagaaaaagagcgacagctc
tctactatgatcacccagctgatcagcttacgggagcagctcctggctgcccatgacgaa
cagaaaaagctggcagcctcacaaattgaaaaacaacggcagcaaatggaccttgctcgc
caacagcaagaacagatcgcaagacaacagcagcaacttctgcaacagcagcacaaaatc
aatctactgcagcagcaaattcagcaggttcagggtcacatgcctccgctcatgatccca
atttttccacacgaccagcggacgctggcagcggctgctgcagcccagcagggattcctc
ttccccccaggaataacttacaagccaggtgataactaccctgtgcagttcattccatca
acaatggcagctgctgctgcttctggactcagccctttacagctccagcaactgtatgca
gctcagctggcaagcatgcaagtttctcctggagccaaaatgccatctactccacagcca
ccaaatacgacaggggcactctcacccactgggatgaaaaatgagaagagagggaccagc
ccggtaactcaagttaaggatgaagcagcccagccactgaatctttcagcccgacccaaa
acagctgaacctgtcaaatccccaacatctccaacacagaacctcttcccagctagtaaa
agcagtccagtgacagtgacaaacaagagtggcatccccagcccgctcggtggatctctg
ggaagaggatcctctttagatatcctttccagtcttaattcacctgccctatttggggac
caggacacagtaatgaaagccattcaggaggcacgaaaaatgagagagcagatccaaagg
gagcagcagcagcaacagcagccacatggtgttgatggaaaattgccctccatgaataac
atgggtctaaacaactgcaggaatgaaaaggaaagaacaaggtttgaaaatttaggccca
cagttaacggggaaacccaatgaagatggaaaactgggccctggtgtcatcgatcttaca
aggccagaagatgcagaaggaagtaaagcaatgaatggctctgcagctaaactacagcag
tattattgttggccaacaggaggtgccaccgtggctgaagctcgagtctaccgggattca
cggggccgagccagcagcgaaccgcacatcaaacgaccaatgaatgctttcatggtttgg
gcaaaggatgagcgtcgaaaaattctccaggccttccctgacatgcacaactccaacatt
agcaaaatcctaggatctcgctggaagtccatgtcaaatcaagagaaacaaccttattat
gaagagcaggcacggctaagtaaaatccacctagaaaagtatcctaattacaaatacaaa
cctcgaccaaaacgtacctgcattgttgacggaaagaaattgcgtattggtgaatacaaa
caactgatgaggtctcgaagacaggagatgaggcagttttttaccgtaggacaacagcct
caaattccaatcaccacaggaacgggggttgtctatcctggtgctattaccatggcgact
accacgccatcacctcagatgacatcagattgctccagcacctctgccagccctgagccc
agcatccccgtcattcagagcacttacggtatgaagacggacagcggaagccttgctgga
aatgaaatgataaatggagaggatgaaatagaaatgtacgaggactatgaggatgatccc
aaatcagactatagtagtgaaaatgaagcccatgaggcagtcagtgccaactga
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