Rissa tridactyla (black-legged kittiwake): 128909612
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Entry
128909612 CDS
T09443
Symbol
DDB1
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd03420
Nucleotide excision repair
rtd04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
128909612 (DDB1)
09124 Replication and repair
03420 Nucleotide excision repair
128909612 (DDB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rtd04121
]
128909612 (DDB1)
03400 DNA repair and recombination proteins [BR:
rtd03400
]
128909612 (DDB1)
Ubiquitin system [BR:
rtd04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
128909612 (DDB1)
DNA repair and recombination proteins [BR:
rtd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
128909612 (DDB1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
128909612 (DDB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
128909612
NCBI-ProteinID:
XP_054057493
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All DBs
Position
4:2158005..2176123
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AA seq
1140 aa
AA seq
DB search
MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
TAVMELFRPKGESKDLLFILTAKYNACILEYKQNGDSIDIITRAHGNVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLDRENKELKAFNIRLEELQVIDVKFLYGCQAPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDSHRE
TDNTLVLSFVGQTRVLMLNGEEVEETELTGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
QEPKALVSEWKEPNGKNISVASCNSNQVVVAVGRALYYLEIRPQELRQISCTEMEHEVAC
LDITPLGDTNGMSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLSLETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDASGGTTALRPSASTQALSSSVSTSKLFSSSTAPHET
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
AEPKQGRIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLSHLGEFVNVFCHGSLVMQNLGET
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER
KTEPATGFIDGDLIESFLDISRPKMQEVVANLQIDDGSGMKREATVDDLIKIVEELTRIH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcctacaactacgttgtgacggcgcagaagccgacggccgtgaacggctgtgtcacc
ggacacttcacctcggcagaggatttgaacctgctgatcgccaagaacacgcgactggag
atctatgtggtgacagcggaggggctgcggcccgtcaaggaggtggggatgtacggcaag
accgccgtcatggagctcttccgccccaagggggagagcaaggatttgttgttcatcctg
acagccaagtataacgcctgcatcctggagtacaagcagaacggggacagcattgatatc
ataacccgtgctcacggcaacgtgcaggatcgcatcggccgtccttcagagaccggcatc
attggcatcatcgacccagagtgccggatgatcggcctgcggctctatgatggcctcttc
aaggtcattcccctggaccgggagaacaaggagttaaaggcttttaacatccgcctggaa
gagctccaagtcattgacgtgaagtttctctatggctgtcaggctcccaccatctgcttc
gtctaccaggaccctcagggtcgccacgtcaagacgtacgaggtgtccctgcgcgagaag
gagtttaacaaaggcccttggaaacaggagaacgtagaggctgaagcctccatggtcatt
gcagtgccagaaccttttggaggcgcgatcatcattgggcaggagtctatcacctaccac
aatggagataaatatctagctatagctccacctatcatcaagcaaagtacgattgtgtgc
cacaaccgtgtggatcccaatgggtcccgttacctgctgggagacatggaaggacgcctc
ttcatgctgcttctggagaaggaggaacagatggatggcactgtcaccttgaaggacctg
cgtgtggaattgctcggcgagacatccattgcggagtgcttgacctacctggacaatgga
gttgtgtttgtcggctctcggcttggggattcccagcttgtgaagctcaacgtggacagc
aacgagcagggctcctacgtagtggctatggagaccttcactaatctcggtcccatcgtt
gacatgtgcgtggtggacctggaaagacaaggccaagggcagctggtcacgtgctcgggc
gcatttaaagagggatcactgcgcattatccggaatggcattgggattcacgagcacgcc
agcattgacttgccggggattaaaggcctgtggcccctgaggtcggactctcatcgtgaa
accgacaatacgttggtgctatcctttgttggccagaccagggtccttatgttaaatgga
gaggaggtagaagagacagagctcacagggtttgtggatgatcagcagactttcttctgc
ggcaatgtggcacatcagcaactgatccagatcacctctgcctctgtgagactggttagt
caggagcccaaagccctggtgagcgagtggaaagagcccaacggaaagaacatcagcgtg
gcttcctgtaacagtaaccaggtggtggtggctgtgggacgagccctgtactacctggag
atccgaccccaggagctcaggcagatcagctgcacggaaatggagcatgaagttgcctgc
ctggacatcacccctttgggggacactaacggcatgtccccgctgtgtgcaatcgggctc
tggaccgacatctctgcccgcatcctaaagctgccttcgtttgagctgctgcacaaagag
atgctgggaggagaaattatccctcgctccatcctgatgacgaccttcgagagcagccat
taccttctgtgtgccctgggggacggagctctcttctactttgggctcagcctggagaca
ggcttgctgagtgaccgaaagaaggtgacgcttgggacccagcccaccgtcctgaggact
ttccgctctctctccaccaccaacgtgtttgcctgctctgaccgccccaccgtcatctac
agcagcaaccacaagctggtcttctccaacgtcaacctgaaagaggtgaactacatgtgc
cccctcaactcggatggctatcctgacagcttggcgttggccaataacagcaccctgaca
attggcaccatcgacgagatccagaagctgcacatccgcacagttcccctctatgaatcg
cccaggaagatctgctaccaagaggtatcgcagtgtttcggcgtgctctcgagtcggatc
gaggtgcaggatgccagtggaggcaccactgcgctcagacccagcgccagcacccaggcc
ttgtccagcagcgtgagcaccagcaagctgttctccagcagcacggcgccgcatgagacg
tccttcggagaggaggtggaggtgcacaacctgctcatcatagatcagcacaccttcgaa
gtgcttcatgcccaccagttcctgcaaaacgagtacgccctcagcctggtctcctgcaag
cttggcaaggatccgaacacctacttcatcgtgggcactgccatggtctatcccgaggag
gcagagcccaagcagggccgcattgttgtcttccactactctgacgggaagctgcagagc
ctggctgagaaggaggtgaagggggccgtgtattccatggtggaattcaatggaaagctg
ttagccagcatcaacagcacggtgcgcctgtatgagtggacagcagagaaagagctgcgc
acggagtgcaaccattacaacaacatcatggcgctctacctgaagaccaagggagacttc
atccttgtgggagacctgatgcggtctgtcctcctccttgcctacaagcccatggaagga
aacttcgaggagattgcccgggacttcaatccaaactggatgagtgccgtggagatcctg
gacgacgacaatttcttgggagcagagaacgctttcaatctgttcgtgtgccagaaggac
agtgcggccacgaccgatgaggagcgccagcacttgcaggaggtggggctgtcccacctg
ggagagtttgtcaacgtattctgtcatgggtctctggtcatgcagaacctgggcgagacg
tccacaccgacacagggctcggttctcttcggcacagtcaacggcatgattggactggtg
acctcgctgtcggagagctggtacaacctcctcctggacatgcagaacaggctgaataaa
gtcatcaagagcgtgggcaagatcgagcattccttctggagatcgttccacaccgaacgc
aagacggaaccggcgacgggattcattgacggcgacctgattgaaagcttcctggacatc
agcaggcccaagatgcaggaggtggtggcaaacttgcagatcgatgacggcagcggcatg
aagagggaggccactgtagacgacctgataaagatcgtggaggagctgacccggatccat
tag
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integrated database retrieval system
