Rissa tridactyla (black-legged kittiwake): 128909794
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Entry
128909794 CDS
T09443
Symbol
DCHS1
Name
(RefSeq) protocadherin-16
KO
K16507
protocadherin-16/23
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
rtd04515
]
128909794 (DCHS1)
Cell adhesion molecules [BR:
rtd04515
]
Cadherins
Cadherin related
128909794 (DCHS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_2
RET_CLD1
Cadherin_4
CADH_Y-type_LIR
Motif
Other DBs
NCBI-GeneID:
128909794
NCBI-ProteinID:
XP_054057979
LinkDB
All DBs
Position
1:complement(12253337..12329916)
Genome browser
AA seq
3266 aa
AA seq
DB search
MEQMKGSAVLLLELLILGGLRAGKGSAVLGTLDLQIDEEQPAGTIIGDISAGLPPGTSAY
MYFISAQEGSGVTTDLGIDENTGIIKTARVLDRETRDRYSFIAVTPEGITVEVNIQVNDI
NDHAPAFPKQHSTLQIPEHTPIGSRFPLDPAFDADSGLLNTQGYVIKGENVGQAFRLETR
RGPNGVLYLDLVVSNVLDRENRSSYSLLLEAYDGGSPPRSTQMTLDVSIQDINDNAPSFN
QSRYHTLISENLKPGSSILQVFASDADEGDNGDVIYEINRRQSDPDQYFTIDSRTGVIKL
NKGLDYEVRKVHELVVQARDKAVHPEVTTAFVTIHVRDYNDNQPTMTIIFLSEDGSPQIS
EGAQPGQYVARISVSDPDYGEYSNVNVTLEGGDGKFALTTKDNIIYLICVDQLLDREERD
SYDLRVTATDSGTPPLRAESAFVLQVVDINDNPPLFDQQEYKQSIPEVVYPGSFVLQVTA
RDKDQGPNGEVRYSIVHGRDTHSSWFAIDPATGIITTAAPLDYEKDPQPQLTVLATDRGT
PALSSSAVVHVSLQDVNDNEPVFRSNFYNVSLKENTPVGTCFLQVTATDADSGTFGSLSY
SIGSGIGSVVPTQFSIDKHSGQLCTVQPLDRDEGTSAYDFTITAVDGGGLNSMVYVKVFL
EDINDNRPVFYPLEYAASISTQSMPGTAVLRVTAHDKDEGLNGRVTYRIVLGNSPPLFSL
NKDTGVISLSWSLSGKANTLVQLVISAQDGGGLQAQPNARVNISVVEGTVSPPVFEQAQY
FFTVPEDVLQGASVGAVRAQNPPGHADDIFYSISSGDPHGYFSIDSASGQLRTSLPLDHE
SQAVLILDVQARSGSPPAYSNTRVKISVSDVNDNIPVFPAPSDSILLPEATEPGTTVYTL
QAEDRDSGANGQVNFELASGGDGTFSVDRSSGAVRLIGALQYEASAAYRLAIVARDSGVP
QLSSTFTLLVHVQAEHDNGPIFDTLTYRVEVQEGVPVSTRFLQVRALARDAESVTLTYHL
RADGDAASFGIMPESGWLYVKSALDRETRDLYVLTVLASAGGSGAGGEARKTGTSTVRIS
ITDENDNSPRLSEERYFFTVPENQAPGSSVGRVMASDRDAGQNSRLTYRLLQHDPNFLIH
AQTGELSTKHSLDREQQSSYQLLVIVQDGGAPPRSATGTIYVTVLDENDNAPAFLHVASG
QELPVQVLEEKPSGLLVASLQAKDPDEGENGTIIYSLIGAWAERFTLHMATGELRTATVL
RRSDRAEYIFTVTASDRGTVPRSTSAIIRIQVLPSSRVLPRPDATVLTLHPLEGVKPGSV
IGSVAPPDAPARGQLTYTVVGGGGDGTFVVDSVTGEIYAARELDYEAGARHVLQVSAEDT
QHGYPSSRLVLVHIHVQDCNDQAPTFPEDPITIVVPENAQAGSSVFTFQALDGDGVGPNS
QVRYALLHQEPPEAPFQLDSRSGLLTLRHGLDREAAASFLLVVEATDQARNVSQRRSAAV
TARVFVTDENDNVPVFLSPAAVSVMEDQPTGFVALHVVAQDNDLGENGRVSYSLRAGNSD
GRFHLNPSTGALSIVRALNREEVVQHNLTVVAMDHGFPRRSATQLLSVLVLDVNDEAPAF
EKPEYEAHIMENLPAGSPVLQVLATDRDLGANGQVSYGTLSGGPFSIHPQTGLIVTTRAL
DREEQEQHVLMVYARDGGLPPNLSKATVRITVGDENDHAPHLESESCSVEVPENQSRVAL
YTLRATDPDGGENGRLEYRVADGDPGQDFSLDPVSGVLSTARALDREQVASYSLTVVVQD
HGTPPRSATMAVNVRVLDLNDNAPGFAQASYVVEVPEDLPVGALVLQLVAEDPDEGTNGQ
VSYYLGNESLGMFQVEPQSGHIRSAQALDRERHPSYSFLAKAVDSAPWEPKSAAVRVTVT
VRDVNDHAPAFLHSPLTVNLSRHTPLKQVVATMRAEDRDAGANASILYRLATPNSAFAIN
SYTGDIQLLQPLSSLSQRQRTLFILATDLGQPALSSTGVVVIHLQEEPYQGLRFPRSTSD
VAIPENAAPGTAVANIQATHTGGSSGRITYSIVSGNEKNAFLIQPSSGAISVQDSSSLDF
EASPRLRLVVQAETAASFGFMAINLNLQDVNDNLPRFQLQNYVAFIWESQSYDSPVIQVL
ADDLDQGANGQVTYAINQSLPMTGLYHIDPQTGTITTAAILDREIWSQTRLVVTAMDRGT
PPLVGSATLTVVVMDVNDNSPTIPFPWEVRVPENTLLGTQIAQLTGNDVDSGPVLSYALM
LDGDAVGTFSVLRYGGRIALTGPLDYEQRSHYTLTLRASDTRHETEANLTVVVEDVNDNA
PTFSQGFYQVTLPEHTPAGSIILTVSATDPDSGSNGDVTFHLAVPSPDIAIDPSNGTLFT
IRRVEFDANQPTLDLVVEARDRGSPSLSSWATVQLQVLDVNDHSPSFHAPRYNASVPEDL
RPGTTVLTLEAGDADLSRENAGFDYTIVSGNGGNAFQVESRVAWAGGHLRTQGALVLVEH
LDFEAIPVYNLTVAASDRGLPQRSATVPVLITVQDVNDNPPVFTRAEYRTAVSESAPPGT
ELLRVVAHDADSGPRGHVHYTISSGDQHGLFQLHENTGALCLARPLDREAQALHALVVQA
TDVPGGHFALVPVAIEVKDVNDNKPYFPVEVLSASMRENLPPGTLVTTLRAIDADTGVFG
ELRYTVLEQPVGEPGMAEGRDAFAVNSSSGELRSRLTFDYERAKAFQLLVRATDAGNASA
TVTVRVLVTGEDEYNPIFLSPSFNFEVPEGARKGQSIGRVLATDEDEGADGVVLYSLAKP
SPYFAINQTTGTIYLRVDSQPQAGAGRAKREPREMSLEVQARSPLPASRSASAQVIIDVT
HTSFGLAPDLNLLLVAVAASLGVVVVLAAVAIVLALVRSRHRRGRKKPEGDGALGRVPSG
SLQKLGREEPALPGGEHIYHQALPGYGGEPAGPYTRGGSLDPSHSSGRGSAEAAEDDEIR
MINEYPRVASITASMQEHISARGPDSGIQQDADQLSDISCEPAALESAQWFKSKKGSGLL
LPGPPPQLYREDGGGSAFLGVRCGLSVSSQPQDYAFPEDGKPSVEGSLTAIVASDEELRG
SYNWDYLLNWCPQFQPLASVFTEIARLKDESSLRKPFPTKPKAEPKPRIDPPPLITSVAH
PGAKSVPPKPPPGRTFPHPSSLRRSPISHEGSISSSAMSPSFSPSLSPLAARSPVVSPFG
ISQGPSASAISAEHSLEPPEEAELRI
NT seq
9801 nt
NT seq
+upstream
nt +downstream
nt
atggagcagatgaaggggtcggccgtgcttctgctggagctgctaattcttgggggcctg
agagcagggaagggctctgctgtcctgggcaccctggacctacaaatagatgaggagcag
ccagctggcaccatcatcggggacatcagtgctggcctcccccctggaactagtgcctac
atgtatttcatctcagcacaggagggcagcggtgttaccaccgacttggggatagatgag
aacaccggtatcatcaaaacagctcgtgtcctggaccgagagactcgggaccgctacagc
ttcattgctgtaaccccggaaggcatcacagtagaagtgaacatccaagtgaatgacatc
aatgaccatgctccagcctttcccaaacaacacagcaccttacagatcccagagcacaca
cccatcggcagcagatttcccttggacccagcctttgatgctgacagtggcctgcttaat
actcaaggctatgtgattaagggggagaatgtggggcaggccttccgcctggaaacgcgt
cggggacccaatggggtcctgtatttggacctggtggtcagcaacgtcttggatcgggag
aaccgttcatcatactcactgctgttggaagcctatgatggtggctctcctccccggagt
acccagatgacactggatgtgtccatccaggacatcaatgacaacgctcctagtttcaac
cagagccgctatcacactctcatctcagagaatctgaaacctggcagcagcatcctgcag
gtctttgcctctgacgcagatgaaggtgacaatggggatgtgatttatgagatcaaccgg
cggcagagcgatcctgaccagtacttcaccatcgactcccggactggagtcatcaagctc
aacaagggtctggactatgaagtaaggaaggtgcatgagctggtggtgcaggcaagggat
aaggctgtccatcctgaggtcaccacagcctttgtcactattcatgtgcgtgactacaat
gacaaccagcccaccatgactatcatcttcctgagtgaagatggctcccctcagatctct
gagggagctcagcccggccagtatgtggcacgcatctctgtttccgacccagactatggc
gagtactccaatgtcaatgtcacactggagggaggagatggcaagtttgccctcactacc
aaggacaacatcatctacctgatctgtgtggaccagcttctggatagggaagaaagagac
tcctacgatttgcgagtgacagctactgactcaggaacacccccactccgggcagaatca
gcctttgtgctgcaagtggtggatatcaatgacaaccctccactcttcgaccagcaggag
tacaaacaaagcatccctgaggtggtgtacccaggcagctttgtcctgcaggtgacagct
cgtgataaggaccagggtcccaatggggaggtgcggtacagtatcgtgcatggccgtgac
acccactccagctggtttgccattgaccctgccacaggtatcatcaccaccgccgccccc
ctggattacgagaaggatcctcagcctcagctgactgtgctggccacagacaggggcacc
ccggccctctcctcttcagctgtggtacatgtgtccctgcaggacgtcaatgacaatgag
ccagtgttcaggagtaatttctacaatgtttccctgaaggagaacacccctgttgggacc
tgcttcttacaggtgacagccacagatgcagacagtggcacatttggctccctttcctac
tccattggttctggcatcggcagtgttgtccccacacagttcagcatcgacaagcactcg
gggcagctgtgcaccgtgcagcctctggaccgtgatgagggcacgtccgcctatgatttc
accatcactgctgttgacgggggtggcctgaactccatggtgtatgtgaaggtttttctg
gaggacataaatgacaaccggccagtgttttacccgctggagtatgctgctagcatcagc
acacagagcatgccaggtacagctgtgctgcgtgttactgcccacgacaaggacgagggg
ctgaacgggagagtgacctaccgcattgtcctgggaaactcaccccctctcttctccctc
aacaaggacacaggtgtcatctccctctcatggtccctgagtggtaaagccaacaccctg
gtgcagctggtgatctctgcacaagacggtgggggcctacaggcacagccaaatgcccgg
gtgaacatcagcgtcgtggagggcacagtctccccccctgtctttgagcaagctcagtac
ttcttcacagtgcctgaggacgtgctgcagggtgccagcgtgggggctgtccgggcccag
aaccctccaggtcatgcggatgacatcttttattccatctcctcgggggatcctcatggc
tacttttctattgactctgcctccgggcagctccgcaccagcctgcctctcgatcatgag
tcccaggcggttctcattctggatgtccaggcccgaagtggttcacctcctgcctacagc
aacacacgcgtgaaaatctctgtctcagatgtgaatgacaacattccggtgttcccagcc
ccctccgactccattctgctgccagaggccacagaacctgggactacagtgtacactttg
caggccgaggaccgtgacagcggtgccaacggtcaggtgaattttgagctggcatcagga
ggtgatggcaccttcagtgtggaccgctcatcgggggcggtgcgactgatcggggccctg
cagtatgaagccagcgcagcctacaggctggccattgtggctcgagacagcggcgttccc
cagctcagctccacgttcacgttgctggtgcatgtgcaagccgagcacgacaatgggccc
atcttcgacacgctcacctaccgcgtggaggtgcaggaaggtgtccctgtctccacccgc
ttcctgcaggtgcgggccctggcacgcgatgcagaatcggtgacccttacctaccacttg
cgtgcagacggggacgctgccagctttggcatcatgcccgagagtggctggctgtatgtg
aagagcgcactggaccgggagacgcgggacctgtacgtgctcacagtgctggcctcggca
ggaggcagtggtgcagggggggaagcccggaagacaggcaccagcactgtacggatcagc
atcactgatgagaatgacaacagcccccggctgagtgaggagcgttacttcttcactgtt
cccgagaaccaggcccctggtagcagtgtgggaagggtgatggcgagtgaccgggatgct
gggcagaacagccggctcacctaccgcctgctccagcatgatcccaacttcctcatccac
gcgcagacaggggagctcagcaccaagcatagcctggaccgggagcagcagtccagctac
cagctcttggtgatcgtgcaggatgggggagcaccaccccgcagtgccacaggaaccatc
tatgtgactgtgctggatgagaatgacaacgctccggctttcctccacgtggccagcggt
caggagctgcccgtgcaggtgctggaagagaagccatcgggacttctagtcgcctccctg
caagccaaggaccccgacgagggtgagaatgggaccatcatctactcgctgataggagcc
tgggcagagcgtttcacgctgcacatggctactggagagttgcggactgccacagttcta
cgccgctctgatcgtgccgaatacatcttcaccgtgacagccagtgaccggggcacggtg
cctcgcagtacctcagccatcattcgcattcaggtgctgccgtcctcccgggtgctgcca
cggcctgatgccactgtgctgaccctgcaccctctcgagggggtgaagccggggtctgtg
atcggctcggtggcacccccggatgcgcctgcgcgaggacagctgacctacacggtggta
ggaggtggtggggatggcacctttgtggttgacagtgtgacgggggagatttatgctgcc
cgggagttggactatgaagctggggcacggcacgtgcttcaggtgagtgccgaggacacg
cagcatggctacccctccagccgactggtgctggtacacatccacgtgcaggactgcaat
gaccaggcgcccaccttccctgaagaccccatcaccattgtggtgcccgagaatgcccag
gctggctcgtccgtcttcaccttccaggcgctggacggggatggtgtgggtcccaacagc
caggtgcgctacgccctgctgcaccaggagccccccgaggcccccttccagcttgacagc
cgctcggggctgctgaccctccgccacggcctcgaccgggaggctgctgcctccttcctc
ttggtggtggaggccacggaccaggcccgcaacgtcagccagcgccgctcggcagctgtc
acagcccgtgtgtttgtgactgatgagaatgacaacgtgcccgtgttcctctcacctgct
gccgtcagcgtcatggaggaccagccgacggggttcgtggcgctgcacgtggtggcccag
gacaacgatttgggagagaacgggcgtgtgagctactcgttgcgagcaggcaacagtgat
ggccgcttccaccttaaccccagcactggcgcgctctccatcgtgcgggccctcaaccgg
gaggaggtggtgcagcacaacctgaccgtggtggccatggatcacggtttcccgcgccgc
tccgccacgcagctactgtctgtgctggtgctggatgtcaacgatgaagctcccgctttt
gagaaacctgagtatgaagcacacatcatggagaacttaccagctggcagccctgtgctg
caggtgctggccacggaccgggacctgggtgccaatgggcaggtgtcctacgggactctc
tcgggggggccgttctccatccacccacagacggggcttattgtcaccacacgtgccctg
gaccgcgaggagcaggagcagcacgtgctgatggtctatgcgcgggatggtggcctgccc
cccaacctctccaaggcaactgtgcggataacagtaggggatgagaatgaccacgcgcca
cacctagagagtgagtcctgctctgtggaggtccccgagaaccagagccgtgtggcactc
tacaccctgcgggccaccgatcctgacggaggcgagaacgggcgcctggaataccgcgtg
gcagatggagaccctgggcaggatttcagcctagacccagtctccggtgtcctctccact
gcacgtgcccttgaccgggagcaagttgcttcctacagcctcacagtggtggtgcaagac
cacggcacccccccgcgcagcgccaccatggcagtgaacgtgcgggtgttggacctgaat
gacaacgcacctggttttgctcaagcctcgtatgtggtagaggtgccagaggacttgcct
gttggcgccctggtgctgcagctggtggctgaggaccctgatgaaggcaccaatgggcag
gtctcttactacctgggcaatgagtcacttggcatgttccaggtcgagccgcagagcggg
cacatcagaagtgcccaggcgctggaccgggaacgccaccccagttacagcttcctggcc
aaggctgtggattcagcaccgtgggagcccaagagcgcggctgtgcgcgtcactgtcacc
gtgcgagacgtcaatgaccatgcccctgctttcctgcacagcccactcactgtcaacttg
tcccgccacaccccgctcaagcaggtcgtggccaccatgagggcagaggacagggatgca
ggtgccaatgcctccatcctgtatcgcctcgccacccccaactccgcctttgcgatcaac
tcctacacaggggacatccagctgctgcagcccctgagctcgctcagccagcgccagcgg
acgctcttcatcctggccacagacctggggcagccggcgctctcctctaccggcgtggtg
gtgatccatttgcaggaagagccctaccaggggctgcgcttcccccggagcaccagtgat
gtggccataccagaaaatgctgccccaggcactgctgtggcaaacatccaagctacccac
acggggggctcttctgggcgcatcacctacagcatcgtcagcggcaacgagaagaatgcg
ttccttatccagcccagttcaggtgccatctcagttcaggactccagcagcctggacttc
gaggccagcccccggctgcgcctcgtggtccaggcagagacagcagcttccttcggcttt
atggccataaaccttaacctgcaagatgtgaacgacaacttgccacgcttccagctgcag
aactacgtggcgttcatctgggagtcacagagctatgactcaccagtcatccaggtcctg
gcagatgatctggaccagggagcgaatgggcaggtgacttacgccatcaaccagtccctg
ccaatgacaggcttgtaccacatcgatcctcagactggcaccatcactactgctgccatc
ctggacagggagatctggtcccagacgcgtttggtggtaacggcaatggacagagggact
ccgcctcttgtgggctctgccacgctgaccgttgtggtgatggacgtcaatgacaacagc
cccaccatcccgtttccctgggaggtgcgggtcccagagaacacgctgctgggcacccag
atagcccagctgaccgggaacgatgtggactcgggccccgtgctctcctacgcgctcatg
ttggatggtgatgccgtgggcacgttcagcgtgctgcggtatggaggacgcattgccctg
acggggccactggactatgagcagcgcagccactacaccctcaccctgcgtgcctccgac
acccgccatgagacggaggccaacctcaccgtcgttgtggaggacgtgaatgacaacgca
ccgactttcagccagggcttctaccaggtgacactgccggagcacacgcctgcgggcagc
atcattctcaccgtgagcgcaaccgacccggactcggggagcaacggggatgtcaccttc
cacttggccgtgcccagccctgacatcgccattgaccccagcaacgggaccctcttcacc
atccggcgggtggaatttgacgccaaccagcccaccctggacctggtggtggaggcccgc
gaccgtggctctcccagcctctcgtcctgggccacagtgcagctccaggtgctggatgtg
aatgaccacagccccagcttccatgcgccacgctacaatgccagcgtccccgaggacctg
cgcccaggaaccaccgtgctgacgctagaggcaggcgatgccgacctctcccgggagaat
gctggcttcgactacaccatcgtcagtggcaatggtggcaacgccttccaggtggagagc
cgggtggcctgggcaggggggcatctccgcacacagggtgccttggtgctcgtggaacac
ttggattttgaggccatccccgtctacaacctcactgtggcggcctcggaccggggcctg
ccgcagcgcagcgccacggtgcctgtgctcatcaccgtgcaggatgtcaacgacaaccca
cccgtgttcacccgagccgagtaccgcaccgccgtgagcgagagcgcaccccccggcaca
gagctgctgcgcgtggtggcccacgatgctgactcggggccccgcggccacgttcattac
accatcagctcaggagaccagcatgggctcttccagcttcacgagaacacgggggccctg
tgcctggcacggcccctggaccgggaggcccaggcactgcatgcgctcgtggtgcaggcc
acggatgtgccaggcgggcactttgcgctggtacctgtagccatcgaggtgaaggacgtc
aacgataacaagccgtacttcccagtggaggtgctgagcgccagcatgcgagagaacctg
cctcccggcacgctggtcaccacgctgcgtgccatcgacgcagacaccggtgtctttggg
gaactgcgatacacggtgctggagcagccagtgggggagcccggcatggcggagggccgg
gatgccttcgccgtcaacagcagctctggggagctgcgctcccgacttacctttgactat
gaacgagccaaagccttccagctactagtcagggccactgatgctggcaacgcctctgcc
acggtgacagtgcgggtgctggtgacaggggaggacgaatacaatcccatcttcctgagc
ccctccttcaactttgaggtccctgagggcgcccgcaaagggcagagcatcgggcgggtg
ctggcaacagatgaggacgaaggggctgacggcgtcgtactgtactccctggcaaagccc
tcgccgtattttgccatcaaccaaaccacaggcaccatctacctgcgtgtggacagccag
ccccaggccggggccgggcgtgccaagagggagccacgcgagatgagcctggaggtgcag
gcgcgcagccccctgcccgcctcccgctcggcctctgcgcaggtcatcattgacgtcacg
cacacctccttcggcctggcccccgacctcaatctgctgctggtggccgtggccgcctcg
ctgggggttgtggtggtgctggccgccgtggccattgtgctggccctggtccgctcccgt
caccggcggggccgcaagaagccggaaggggacggggcgctgggccgcgtgccgagtggc
tccctgcagaagctcggccgcgaggagccagcgcttcccgggggcgagcacatttaccac
caggccctgccggggtacgggggcgagccggcagggccctacacgcggggcggctcgctg
gacccctcgcactccagcggccgaggctccgccgaagccgctgaggacgacgagatccgg
atgatcaacgagtacccacgcgtggccagcatcacggcctccatgcaggagcacatctcc
gctcgcggccctgactccggcatccagcaagacgccgaccagctctccgacatctcctgc
gagccggctgccctggagagcgcccagtggttcaagagcaagaagggctccgggctgctg
ctgccggggccgcccccgcagctgtaccgcgaggatggaggaggcagcgccttcctcggc
gtgcgctgtggcctcagtgtctcctcccagcctcaggactatgccttcccggaggatggc
aagccctccgtggagggctcgcttaccgccatcgtagccagcgatgaggagctccgcggc
agctacaactgggattacctgctgaactggtgcccccagttccagccgctggccagtgtc
ttcacggagattgcccgcctcaaggatgagagctccctgcgcaagcccttcccgaccaag
cccaaggcagagcccaagccccgcatcgaccccccgcccctcatcacctcagtggcccac
ccgggtgccaagtctgtgccccccaagccgccgccgggcaggaccttcccgcacccgtcc
tccctgcgccgctcgcccatcagccacgagggctccatctcgtcctctgccatgtcgccc
agcttctccccctcgctgtccccgctggctgcccgctcccccgtggtctcgccctttggc
atctcacaggggccttctgcctccgccatcagtgctgagcactcgctggagccccccgag
gaggccgagctcaggatttag
DBGET
integrated database retrieval system
