Rissa tridactyla (black-legged kittiwake): 128909986
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Entry
128909986 CDS
T09443
Symbol
ALMS1
Name
(RefSeq) centrosome-associated protein ALMS1 isoform X1
KO
K16741
alstrom syndrome protein 1
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rtd03036
]
128909986 (ALMS1)
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
rtd03037
]
128909986 (ALMS1)
Chromosome and associated proteins [BR:
rtd03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
128909986 (ALMS1)
Cilium and associated proteins [BR:
rtd03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
128909986 (ALMS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ALMS_motif
DDE_1
Motif
Other DBs
NCBI-GeneID:
128909986
NCBI-ProteinID:
XP_054058622
LinkDB
All DBs
Position
5:complement(39658245..39735474)
Genome browser
AA seq
2914 aa
AA seq
DB search
MEPPEEEVGEEEEERVSPIATTPPHCGRKEESLSRSSSETQASVTSGISLGEAIRQKTAI
NWGIESWYQLPAEVDASHLTAASETKLGLTCGRNDLTEFPTLEEGVLPSAEASRKQSPGD
TAHGLLLDIQDSQFSPCLPLLMYSTQGQRFSDETLLQQSEMDFIPLRGVPDVSGASEEHT
KPLHIHEAMSLTDAESPSNAPGDCLTLSQHPLSFRHVEPCDAGCSGWLSQQTSFSGQLLV
NKGANEDCKNYTNEKAFIPQTSDDLANSASKVMLTKADRLNQMETSLAKQTCSTSIKDER
FSRNGNIPATVFELSEEDKGLLRHDELSSSENSSCKTALTKNSEKREREMPKEKVKMSES
ESEGCLRQLEKLEKEKKVHELDLSHNLPDDLRKDFLQKNCKNSDAQDVFSAKASEIAELL
KEQGEDLNGSESLKLVQAVAEEIQGAFLDHQQKQLSPAVRFEKEEFIPIVTSTSDCAPKQ
LVVTDMEAPSSCREDAAVEVEPGVSRSELTSSDFSIERGHKITGISPSFNLVGDGSFSVH
FTHPNYQSTPGILLKKNVKAEELGVLVIKSDIQASPSCLNEETSGKSSASTPVSPEKQHS
LQCAQKENNECFESLQFKFPHTGRIQSLPSLSFTEKVGAWNMSQPEEISDALTSCAPGGV
SPERKAYSALASSSNNILSIQKSGRDPKDYVAASSRATGSLGSLHFHNKNILLMHLLNRS
QSDNTVNVSSRNTSLVEVILPANSTEAVQPLEEKSNVLGVSENSLRGSMIQKFTAEIVSG
SSAEDAESNSTGQSSDPNIFVSVEGVTQLLPEDANSPTDDQKYCDALENHSYNLNVPTGH
VSMGNFNDISPDSLNLPVSSGESIQGDLGSSGCSSVVSRHFFTSAKDNFSTVGATCLETP
EKEELNIEERIPIYLRNLGIDQSPGTILTPFIPRGPIREVEFSPSELRTLKDSTDTLTRT
APQPQALWETWQLKQLCNWYRGGVLLSRGELPPAVEITQTSFNSDTSTLSISISMNSEVG
ADILSPCELSPRFSRSFGDKSLSQCKTSCHQLEITAPLPTQREAKCSAVSRLAEPNQQQQ
TAGSPGCCSDRESPMLVAKRVQDLLAQNESKDVISSLQRWTAGSLAGVKNEMEVYRGSRT
SSVGSKRNKGQESDSLIGSGALREIHKLLAEDIAVTRCDPVLSTASSRETGKSSPAPIRK
EDGPEGSTLVKDSVPHFQKICSWDETMTQRSKQEEGVVIKPLKYSTCDLRWENSYEVDLR
NSEEMMKEMTKEFRTGKSVGRSEPEGCSSVTTDRNQPGFVGLAQSNGSSEVSTGRTSELR
NSSSSEHLGSVTNVPAGFQGMLSKASVAGSKAGGLQESDDSSSGDSLAARIRNLLGHPFS
SEPLGSVTDVAGGFQSILSKAGAARGKAGGMQESDGSSSGGSLAASVKKQKNGSPVIHAT
QILKSADEEETKARAWVKLKLASRSQESLSDWNEEDQQRLEEIKAELLLSAKKSALAKDL
WGCSLEAASQYSHNQEEDMEHFKSSSDKRFQTDRQTQAVKTKALLESSLRQFVPLCRDGP
SDCCLLKDTQFKSLSTIQTPICSKHQTVATSHSDALVELHPPLQMERDTYAMRSAAREVV
RLPAQKKLSMEMDSEEMAKQITSITFSSRKRLQSPLTSTVLSSSLTRDGLHGIMPLEVDS
ASTEEQSHDKQQSERCKTCPPSSPVLSGSASNEIAFTAEKDRFHHVSADSNRVGAYQETD
GLSDEYSVSIHADKRQTLSAKNSHVLPQDVTELGRHSARLVGLDCNKTFSQETNRFNEAH
SISCYQQDKSSPPGHIQLYESLERSDPAVQTDLLKGRIKLFEEEKKSLSDEVPLVQKEDV
GEQISMSHHSSADEILSTTSVSPLSPTKKVLSCVHITLSSKCNNSDLHGDLNTENEMRSW
DKPEVNTQPVSLKTPETLIEAVSTLSPANLIPEDQRPSSFPRPVSSADPCLVLSTVTSTA
GQELPLQSSERSEVTVLGSGGCSLKNIFNSVVPAKTEKSTSDATTQITTEGPEKITFSAE
IYVNSQDSENAVHQSSLQKAHELPNNTTSSRNKISSFPRQNDQPLLLPYKPSGSTGMYYV
PYLKAGSKISPVVSEASVESSHSGSNDALPPRFSTSVLGLEDDNAPGSTAIEHKEGIYSK
RAKPKVAWAEEQMVPLEASSEHTHHSKSVKTTHSVFKSAQFYLHHPMPMCESYFLSNSEL
SEDSSGIGHARPSSRAILQNRKKVHCHRRVFSVCHKKDSENEFFPLTAEADYSKNEDLNV
STSLGNETSGKDLLQHGRREAEQKAARNYPLPCSQTTCLNETVEKDLSPRNRTHSSGSLD
ELWVKFLECQKRHQHHDFRSNGELSLVERLDRLARVLQNPIKHTLITTKSEKNISEREIK
GRGQKKIRLPEKSMSESTLEPNATHVEERPRITHDKNSLVELRKNRPGEKIVCHMNKILE
HQQYLETPSDTSSETRLSGDHGTTISSTTSESDAVTQTEMETATQTEVSSSISTIDTARL
IRAFGHERVRVSPRLSQLYCTINHQKIRSEKWNKGSGKAVGVEYPKVTSERHRKRKEIQK
AISLSLDSASASSSSWGPSSALSNKRRTRMLNKGIQAGDLEIVNSATKKNTRDVGVTFPT
PRSSQPNQWPQEPWHCVDGIFGESDGTVTDHQAAGSKDKQKGQPGNFSVEKRVKRNRLHL
PQGMSWFVQAEDLKSESRKENHSNSFSGPGPSWFEPLTSTKPWREPLREKNWQEQQHINV
IQPAVLERDAENRSLRPFVKLTLQEALAVHRPDFISRSRERVKHLKLVMEERRVQSVLQS
EREELFNPPEKRKGYRNASHMLSDRGFLIREKRRTIPKSEMVQRSKRIYEQLPEVQKKRE
EEKRKMEYNSYRLKAQLYKTKITNRVLGRKVPWN
NT seq
8745 nt
NT seq
+upstream
nt +downstream
nt
atggagcccccagaagaggaggtgggggaagaggaagaggagcgggtttctcctattgca
acaactccaccacattgtggccggaaggaggaatccttaagccgcagcagtagcgaaacc
caggcatccgttaccagtgggatctccctaggagaagcaatacgtcagaaaactgccatt
aattggggtatcgagtcatggtatcaacttccagcagaagtggatgccagccatttaact
gctgcctcggagacaaagcttggcctgacttgtggtagaaatgacctgacagagttccct
actctggaggaaggagtgttgccttcagcagaagcatctagaaagcagtctcctggagat
acagcacacggcttactgctggatattcaggacagtcagttctctccctgtcttccactg
ctgatgtattcaacacaaggtcaaagattttcagatgagacgcttctccagcagtcagaa
atggattttattcccttaagaggagtccctgatgtttctggtgcatctgaggagcacaca
aagcctttgcacatccacgaagctatgtcactgacagatgcagaatctccctccaatgca
cccggtgactgcttgactttgtcccagcatcctctttcattcagacatgtggaaccttgt
gatgccggctgtagtgggtggttgtctcagcaaacttctttttctggacaactactggtg
aacaagggggcaaatgaagactgtaagaattataccaatgagaaggcatttattccccaa
acaagtgacgatttagcaaactctgcttcaaaggtgatgctaaccaaggcagatagactg
aaccaaatggaaacttctcttgcaaagcagacctgtagtacgtctataaaagacgaacgt
ttctcccgcaacggcaacataccagctactgtttttgagctttcagaggaagacaaaggg
ttactgaggcatgatgagctctcatcttcagaaaactcctcttgtaaaacagcactgact
aagaattcagaaaaaagggaaagagagatgccaaaggaaaaggtaaaaatgtctgagagt
gagtcagaagggtgcttgaggcagctggagaagctggaaaaagaaaagaaggttcatgag
cttgatttgtctcataacttacctgatgatttgaggaaagactttttacaaaagaattgt
aaaaattcagatgcacaagatgttttttctgcaaaggcttctgaaatagctgaactgttg
aaggaacagggagaggatttaaatggctctgaaagcttgaagttggttcaagctgttgct
gaggaaatccagggagctttcctggatcatcagcagaaacaactgtctcctgcagtgaga
tttgagaaagaggagtttatccctattgtgacaagcaccagtgattgtgcacctaaacaa
ctggttgtgactgacatggaagctccttcttcatgccgtgaggatgccgcagtggaagta
gaacctggagtaagcaggagtgaattaactagttcagatttttccatagaaaggggacat
aaaattacaggcatttccccttcctttaatcttgtaggtgatggctcattctctgtacac
ttcactcatccaaactatcagtctactccagggatactactaaagaaaaatgttaaggca
gaagaacttggtgtccttgtcatcaaatcagatattcaggcctctccttcatgcttaaat
gaagaaacttcagggaagtcatctgcaagtacacctgtatctcctgagaaacaacattca
ctccaatgtgctcagaaagaaaacaatgaatgttttgagtccttgcaattcaaatttccc
cacactggaagaattcagtcactcccatcgcttagtttcacggagaaggtaggggcttgg
aatatgagccagccagaggagatatctgatgcattgacttcatgtgccccaggtggagtt
tctcctgaaaggaaagcctacagtgctcttgccagttcttcaaacaatattttgtcaata
caaaaaagtggtagagaccccaaagattatgttgctgcttcctctagagcgacaggttcc
ctgggaagtttgcattttcataataaaaacatactgcttatgcaccttcttaatagatct
cagtctgacaacacagttaatgtttccagtaggaacacgtccttggttgaagttattctg
ccagcaaactcaacagaggcagtgcagcctctagaagaaaaaagtaatgttttaggagtg
tctgaaaatagtttacgaggctccatgatacaaaaatttacagctgagattgtttctggt
tctagtgctgaagatgccgaaagtaatagtacaggacaaagttcagacccaaatattttt
gtttctgttgaaggagtgactcagctccttccagaggatgcaaactctccaactgatgac
cagaagtattgtgatgctcttgaaaatcactcttacaacctaaatgttcctactggccat
gttagcatgggcaattttaatgatatttccccagatagtttgaatcttcctgttagttct
ggggaaagtatccagggggacttgggctcttctgggtgctcttcagtggtttccaggcac
ttcttcaccagtgcaaaagataacttcagcaccgttggagcaacttgtttagaaactcca
gagaaagaagagcttaatattgaagaaaggatcccaatatatcttcgcaaccttggcatt
gatcagtcacctggaactatactgacaccgtttataccccgaggaccgatcagggaagtt
gaattttccccttcagagcttagaacgctgaaggactccactgacacgctaacgaggact
gctccacagccacaagcattgtgggagacttggcaactgaaacaactttgcaattggtac
aggggtggagttcttctcagcagaggtgaattgccaccagcagttgaaattacacaaaca
agttttaattcggacacttccactctcagtatatctatatcaatgaattcagaagttggc
gctgatattctgtcaccctgtgaactctctccccgcttttcaagatcttttggagacaaa
tcattgagtcagtgcaaaacgtcatgccaccaactggagataactgctccacttcccaca
caacgggaggcaaagtgttcagctgtctccagactagctgaaccaaaccagcagcagcag
actgctggttcacctggctgctgttctgacagagagagtcccatgcttgttgcaaaacgt
gttcaggatctgctagctcaaaatgagtcaaaagatgtaattagcagcctgcagagatgg
actgctggctctttggctggagttaaaaatgaaatggaagtttacagaggatcacgaact
tcaagtgtaggtagtaagagaaataagggtcaagaaagtgattctttgattggatctggt
gcattgcgagaaatacataagcttttggcagaggatatagctgtcactcggtgtgatcct
gtcctttccactgcttcttctagagaaactggtaagtcttccccagcgccgataagaaag
gaggatggccccgaaggttccacgttagtgaaagacagtgtcccccactttcagaagata
tgttcatgggatgagactatgactcaaagaagtaagcaagaagagggggtggtaataaag
cctctgaagtacagcacatgcgatttaagatgggaaaattcttatgaagtcgatttgcgt
aatagtgaagagatgatgaaggaaatgaccaaagagtttaggacaggaaaatctgtagga
aggtctgagccagaagggtgtagcagcgtaactacagacagaaatcaacctggttttgtg
ggtcttgcacaaagcaatggaagtagtgaagtcagcactggaagaacttcagagttgaga
aattcttcttcatcagagcatctaggcagtgtcaccaatgtcccagcaggcttccagggc
atgttgtctaaagctagtgtagctggaagcaaggcaggaggtttgcaagagagtgatgac
agtagcagtggagattcactagctgcccgtatcagaaaccttctggggcatccattttcc
tcagagcctctaggcagtgtcaccgatgtcgcaggaggcttccagagcatattgtctaaa
gctggtgcagccagaggcaaggcaggaggtatgcaagagagcgatggcagtagcagtgga
ggttcactagctgccagtgtcaaaaaacagaaaaatggctcgcctgtgatacatgcaaca
caaattctgaagagtgcagatgaagaggagacgaaagcacgagcatgggtgaagctaaaa
ctggccagccgatctcaggaatctctgtcagactggaatgaagaggaccaacaaagacta
gaggaaataaaggcagaactgcttctgagtgccaagaaatctgcactagccaaggatttg
tggggatgcagtttggaagctgcttctcaatatagccataatcaggaagaggacatggag
catttcaaatcttcaagtgacaaaagatttcaaactgacagacaaacacaagcagtcaag
actaaggcacttttagagtcaagtttacgacaattcgtgccattatgtagagatggtcca
tctgattgttgcctgctgaaggatacacagtttaaatctttgagtacgattcaaacacct
atttgcagcaagcatcagacagttgcaactagtcattctgatgcacttgttgaacttcat
ccaccattgcagatggagagagacacatatgcaatgaggtctgcagcaagagaagtagtc
cgtttaccagctcagaagaagctgtctatggaaatggattctgaggaaatggctaagcaa
attacttctatcactttttcatcccgaaaacgtttgcagtcacctttgacttccacggta
ctcagcagcagtctcactagagacggtcttcatgggataatgcctttggaggttgactct
gctagcactgaggaacagagccatgacaaacaacaatcggaaagatgtaagacctgtcct
ccttcaagtccagtgctttctggctcagcatctaatgagattgcttttactgctgagaaa
gacaggtttcatcatgtctctgctgacagtaacagagttggagcttatcaagaaacagac
ggtttgtcagatgagtattctgtaagcatccatgctgataaaagacagacccttagtgca
aaaaattctcatgttctgcctcaagatgtgactgaattgggcaggcatagtgccagactt
gtggggcttgactgcaataaaacattcagtcaagaaacgaatagatttaatgaagcccat
tctataagctgttaccagcaggacaaaagtagcccacctggccacatccagttgtatgag
agcttagaacgttcagatccagccgtacaaactgatttgctgaagggccgtattaagtta
tttgaagaagagaagaaaagtctttctgatgaagtacctcttgttcagaaagaggatgtg
ggagagcaaatcagtatgtctcatcattcatctgcggacgagattttatccaccacgtct
gtatctcctttgtcaccaactaagaaagtactgtcttgtgtccacataactctttcctca
aagtgtaacaactcagacctgcatggtgacttgaatactgaaaatgagatgagatcatgg
gataaacctgaagttaatactcaaccagtgtctttaaaaactccagaaactttaatagaa
gctgtttccacattatcacctgctaaccttattccagaagatcaaagaccttcatctttc
ccaaggccagtgtcttcagcagatccctgtctagtgctttccactgttacaagcacagca
gggcaagagctacctctgcaaagcagtgagagatcagaagtcactgttctgggttcaggg
gggtgtagtctgaagaatatcttcaactctgtagttcctgcaaagactgagaaaagtact
tctgatgctaccactcagataacaacagaaggtcctgaaaaaataaccttttcagcagaa
atttatgttaattcacaagacagtgaaaatgctgtccaccaatcatctctccagaaagca
catgaacttcccaacaatacaacttcatctcggaacaagatttcctctttcccaaggcag
aatgatcagcccttattgttgccatacaaaccttctggaagtactgggatgtattatgtt
ccgtatctaaaagcaggatccaaaatttctccagttgtgtcagaagctagcgttgagagc
tctcactcagggtcaaatgatgctcttcctccaaggttttcaacaagcgtgcttggttta
gaggatgataatgctccaggcagtacagctatcgagcataaagaaggaatctacagtaag
agggccaagcccaaggtagcctgggctgaggagcaaatggtaccactggaagcttcctca
gaacacacacatcattcgaagtctgtaaaaaccactcattcggtcttcaaatctgcacag
ttctaccttcatcatccaatgcccatgtgtgagagctacttcctgtctaacagcgagctg
tcagaagacagttctggtattggacatgctagaccttcctcaagggctatcttgcagaat
cggaagaaagtacattgtcatcgacgtgttttctctgtttgtcataaaaaagatagtgaa
aatgaattctttccactcactgcagaagcagattacagcaagaatgaggatctaaatgtt
agcacatctttggggaatgaaacgtcagggaaggacctacttcaacatggcagaagagaa
gcagaacaaaaggcagctagaaattatcctttgccgtgtagccaaacaacttgcctcaat
gagactgtggagaaagacctgtcaccgagaaacagaacccactccagtggtagcttagat
gaactctgggttaagtttttggaatgccagaagagacaccagcaccatgattttaggagt
aatggtgagctgtcccttgttgaacgcctcgatagattggccagggtcctccagaatccc
attaagcatacactaataacaacaaaatctgaaaagaacatttctgaaagggaaattaag
ggaagagggcagaagaaaataagactgccagaaaagagcatgtctgaaagtacattagag
cctaatgcaacacatgttgaagaaagaccacgtatcacccatgataaaaatagccttgtt
gagctcaggaaaaataggccaggagagaaaattgtctgccacatgaataaaattttggag
caccagcagtacttggaaactcctagtgacacttcctcagagacaaggcttagtggagat
catggtaccacgatcagttctaccacctcagaatcagatgctgtgacccaaacagagatg
gaaactgctactcagactgaggtgagcagttccatttccaccattgacacagccaggctg
atcagggcttttgggcatgaaagagtgcgggtgtcaccaagactctcccagctttattgt
accatcaaccaccagaaaattcgctctgaaaagtggaacaagggaagtggcaaagcagtg
ggtgtagaatatccaaaggttacttctgagagacacaggaaaaggaaagagatccagaag
gcaatctccctttcattggattcagcttctgcaagcagcagttcttggggaccaagctct
gctcttagtaacaagcgacggacacgtatgctaaacaaaggtatccaagcaggagacttg
gagattgtgaacagcgcaactaagaaaaacactcgagatgttggtgtgacttttcctacc
ccaagatctagtcagccaaatcagtggccccaggaaccctggcattgtgttgatggtatt
tttggagagtcagatggcacggtcacagatcatcaggcagcaggaagcaaggataagcag
aagggacagccaggcaatttttctgtggagaaaagggtgaaaaggaacaggctgcattta
ccacaaggaatgtcatggtttgtccaagcagaagacttgaaatctgaatctaggaaggaa
aaccattccaattccttttctggtcctggtccctcttggtttgaaccattgaccagcaca
aagccttggagagagcctctccgagagaagaactggcaagagcagcagcacatcaacgtg
attcagccagcagttctggaaagagatgctgagaacaggtccttacgaccgtttgtgaag
cttacgctacaggaggctcttgcggtgcatcgccctgatttcatctcccgctctagagag
cgtgtgaagcatctgaagcttgtaatggaggaaaggagggtacagagcgtactgcagtcc
gaacgagaagagctatttaatcctccggagaagagaaagggctacaggaatgcaagtcac
atgctgtctgacagaggttttctgattagagaaaagagaagaacaattccaaagagtgaa
atggttcaaagatctaaacggatctatgagcagcttccagaagtgcagaagaagcgagag
gaagagaagagaaaaatggaatacaactcatatcgcctgaaagcacagctttacaaaaca
aaaatcaccaaccgtgtcttagggaggaaagtgccttggaactga
DBGET
integrated database retrieval system
