Rissa tridactyla (black-legged kittiwake): 128910011
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Entry
128910011 CDS
T09443
Symbol
DDX60
Name
(RefSeq) probable ATP-dependent RNA helicase DDX60 isoform X1
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtd03019
]
128910011 (DDX60)
Enzymes [BR:
rtd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128910011 (DDX60)
Messenger RNA biogenesis [BR:
rtd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
128910011 (DDX60)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PIN-like_DDX60
DEAD
ResIII
Helicase_C
RuBisCO_small
Motif
Other DBs
NCBI-GeneID:
128910011
NCBI-ProteinID:
XP_054058696
LinkDB
All DBs
Position
5:42523130..42572113
Genome browser
AA seq
1827 aa
AA seq
DB search
MPESRSMMYSADYFKKVIRNDANENASNDDKDSECSDSEKIRFIPTKEDEESESTSDSDE
EDETSDRVEAAVMKMLKEEEGRRKEAEDPDYRNAYSISSTEEVTQQASRTEDKDFRVLKH
ERDSRSPEIRKHLEFLKKLRLHSWASLSRAQYVSLLKDFVESEFFVIDGDSLLLMFLDSK
TQYLNFFYQIECFLQNFTEKGAKYVIVFFKDAEQMYLPYPHFLFLRTALIEHLRHNTGTT
VHTEFSNCLSSKWENFLKKNYPYFIIISDIGLTSLQTDYLSILIAHSLAKKINVVLASGQ
EYDILRVYGYHVQSVYKHRVFFQKHQDDLQYACENLVRYKEPLICLYEHLKLSLKSIQKE
VHQTVCLLRQLWPEGSDIQRVVCVLACAVGLKIYSNMLKNSNTSMGAKTKQSARGRSKPL
SPEEAADLCRMQCLTVAFLLHMPLSQRAQIRIMKSYWTKQVLPLIKMQQLCMHFSLTQLS
DTNGWKLDLTYLPDLNDDSLLRNIAHYYEVEYTRGLEFKKELGKEIENEYQCLWDTVTKL
AVKYSFGDAFPIRKTSQLFLEQEQTLFRDYAAEIPNIGLISVKSDLVEDYAGDVLKDLPV
LESNDPAITSLTRYREFDELHHWHSGRPLAEEYVRVRCNTDAKYKDPEERRRIQNLQNFQ
NFYGSTLEKFTSKVVVHQEDVSGNASTAVKKTQKKHKSKAETIIEENNRRLKTKEEKKEQ
EQWKALCIPIEKEIKANLTVGINKLEKFLKTLKSKSVKFNVEMAGLSVCLEVWKKHCREQ
GNKSKDLSKAVEVMRRIHILLEKYQDLLEKPHLQKLTRYLRLLGFENLACCLSGQTGESS
DHNVSTCAVEVGPARFQLQYMDYYLLREERNDPDPRVQHFIPDTWQRELFDAVDNNESAV
VVAPSSSGKTYASYYCMEKVLKTSNDGVVVYVAPTKALVNQVVGTICSRFTKELPYGLSV
CGVFTRDYRSDVMNSQILVTVPQCLEILMLSPRCQKWTKQIQYVIFDEVHCLGGEIGAEV
WEHLLVTIRCPFLALSSTVSNPEHLTEWLQSVKRYWQHAENRIERSSANSEKNFTRKCKV
KSKVQEQKKSYRVRLVLYEERYNDLENYVCSLKGSDFIIELCHPCAALTVNHIENYGIPS
YLSLSPRESIHLYDTMVKVWQEWPRAQELDPEEFVSFKNKVVIKRSDVRKYEQELKKELS
KWIVLGQRQKVNKLLEHLKPQPVDCSEEKMWKHFASFVDKLHEMDKLPAIFFIFNVDSVE
CAAKNVFLSLLKKQKSEQHPSTEKDEEHLRDELRKVNKQLTKLNPQDIKKLSPSEMDNMR
FLLTTKQQLENRLKRLTAIPSACAYTDPKAVDEDTLRKIFHQLNFEKRGYLQQMMALRGI
GYHHGSMATKERQVVEMLFRLGYIKVVTATSTLGLGINMPCKSVVFAEDSVFLDTLHYKQ
LSGRAGRRGQDMIGNVFFYDIPLHKIERLIKSNVPQLKGQFPLNVTLILRLMLLVAKADD
KADARAKALSVLKHSLMSFRKERYAEILKIYFIFSLQFLIKEGYLDQEGNPIGFAGLVTH
LYYHEPSNFVLASFLVKGLFHKLCQPIKGSTVFSEEVLEKLVLILANLFGRKHLPACSMK
YKQTSCQSKVFLEDLPKDFADAVNEYNTKVEKNFAHFLLTIAKLADMEQEYRLPLSKTDF
TSKNWHGSELASYLMDNTKSISAISPFACLSGVVDNDLFHGEIINKAVLRSLGINVTNCP
LFYLNKYDNQGRKRPLNAYALDFYKNGSLTDNWLNERDAYYALKDFSLLIKSIGTSLSEL
CDNPNDNVLLAFRQLGAIYEEKLKSVT
NT seq
5484 nt
NT seq
+upstream
nt +downstream
nt
atgccagaatcaagatctatgatgtattctgcggattatttcaagaaagtaattcgtaat
gatgcaaatgagaatgctagtaatgatgacaaggacagtgagtgtagtgacagtgagaaa
atacgcttcattccaacaaaggaagacgaagagagtgagagtacaagtgacagtgatgag
gaggatgagaccagtgacagagtggaagcagctgttatgaagatgcttaaagaagaggaa
ggcagaagaaaagaagctgaagacccagattaccgtaatgcttatagtatctcaagcact
gaagaagtgacacagcaggcatcacgaactgaagacaaggatttcagagttctcaagcac
gaacgtgattcccgaagccctgaaataagaaaacatcttgaatttctgaagaagttgagg
ctacacagctgggcatccctatcaagagctcagtatgtcagtctgttaaaagacttcgtt
gagtctgaattctttgtgatagatggggattccttactacttatgtttttagattcgaaa
acacaatatctaaacttcttctaccaaattgaatgcttcctgcaaaatttcactgaaaaa
ggagcaaaatatgtcattgttttcttcaaggatgcagaacagatgtatcttccatatcct
cattttcttttcttgcgtactgccttaatagaacacctgaggcataacacaggcacaact
gttcatacagaattttccaattgtttatcatccaaatgggagaatttcctgaagaaaaat
tatccttacttcatcatcatatctgacataggactgacctctctccaaacagactattta
tctattttaattgctcattcattggcaaagaaaatcaacgttgtgcttgcttcaggacag
gagtatgatattcttagagtttacggatatcatgttcagagtgtgtataaacacagagta
ttttttcaaaagcatcaagatgatctgcaatatgcctgtgaaaacctagtcaggtacaaa
gaaccgttgatatgtctatatgaacatctcaagctgagcctgaaaagcatacaaaaagag
gttcaccagactgtgtgtctgttgagacagctgtggcctgaaggatctgacattcagcgt
gtggtctgtgttcttgcttgtgctgtgggattaaaaatatacagcaacatgttgaaaaat
tcaaatacttccatgggagcaaagacaaagcaatcagcaagaggaagaagtaaaccccta
tctccagaagaagcagctgacctctgtagaatgcagtgtcttacagtcgcttttcttctt
catatgcctctttcacagagagctcagatcaggatcatgaaatcctactggactaagcaa
gttttaccattaataaaaatgcaacagctgtgtatgcatttttctctgacacagctaagt
gatacaaatggttggaaattggatttaacttacctgcctgacttaaatgatgattcactg
ctcagaaatattgcacattactatgaggtcgaatatactagagggttagagttcaaaaag
gaattggggaaagaaatagagaatgaataccagtgtttatgggacactgtaacaaaattg
gctgtgaaatacagttttggagatgccttcccaatacgaaagacttcccaactatttctt
gaacaggaacagacattatttagagactatgcagcagaaattcctaacattggacttatc
tcagtgaaatctgatcttgttgaagattatgctggagatgttttgaaagacctacctgtt
ttagaaagcaatgatcctgcaattacttcacttactagatacagggaatttgatgagctt
catcactggcattctggcaggcctttggctgaggaatatgtgcgagtacggtgtaatact
gatgcaaaatacaaagatccagaagaaagaagacgaatacaaaatttacagaattttcaa
aatttttacggaagcactttggaaaagttcacttcaaaagttgttgtacatcaggaggat
gtgtcagggaatgctagtactgctgttaaaaagacacaaaaaaagcataaaagtaaagcg
gagacaattatagaggaaaacaacagacgactaaaaactaaagaagaaaagaaagaacag
gagcaatggaaagccttgtgtataccaattgaaaaggaaataaaagcaaatctgactgtt
ggaataaataaattggagaagtttctcaagacccttaaaagtaaatctgtgaagttcaac
gtagaaatggcaggactgtctgtctgtttagaagtgtggaagaaacactgcagagagcaa
ggtaacaaatctaaagatttaagcaaagctgttgaagtcatgaggaggattcatatcctc
cttgaaaaatatcaagatctcttggagaaaccacatctacaaaagctgaccagatatcta
agacttcttggatttgagaatttggcatgctgtctgtctggccagacaggagaaagtagc
gatcacaatgtaagcacctgtgctgtcgaagtgggtccagctcgctttcagctacaatat
atggattattacttgctcagagaagagagaaatgatccagatccccgagtgcaacatttc
ataccagacacatggcagcgagaactttttgatgctgtagataataatgagtctgcagtg
gttgttgctcccagttcatcaggaaaaacatatgcatcatactattgcatggaaaaagtt
ctgaaaacaagcaatgatggagtggttgtgtatgttgctcctacaaaggcccttgtaaac
caagtggtgggaactatatgcagtcgattcaccaaggagcttccgtatggattgtcagtg
tgtggagtcttcacacgagattatcgcagtgacgtcatgaattctcagatactagtgacc
gtgcctcagtgtttagaaatcttgatgctgtctcctcgttgccagaaatggaccaaacag
atacaatatgttatatttgatgaggtccattgtcttggcggtgaaattggagcagaggtt
tgggagcatcttctggtaacaattcggtgtccgtttttggcgctctcttctactgtcagc
aacccagaacacctaactgagtggttacaatctgtgaaaaggtattggcaacatgctgag
aatagaatagaaagaagctctgcaaactctgaaaagaactttacaagaaaatgtaaagtg
aaatctaaagtacaagaacaaaagaaatcatatcgtgttagactagtcttgtatgaagaa
agatacaatgatttggaaaattatgtgtgttctctgaagggcagtgattttatcatagaa
ctttgtcatccatgtgctgcattaacagtcaatcacattgagaactatggaattccttca
tatctttctctgtctccacgagagagcattcacctttatgacacaatggtgaaagtctgg
caagagtggccaagggcacaggagctagatcctgaggagtttgtctctttcaagaataaa
gtagtaataaaaaggtcagatgtgaggaaatatgaacaggaactaaagaaagaactaagc
aaatggattgtgcttggccaaagacagaaggtgaataagctattggagcaccttaagcca
caacctgtggattgctcggaagagaaaatgtggaagcattttgcaagctttgttgataaa
ttacatgagatggataagttgcctgccatattttttatatttaatgtggattcagtggaa
tgtgcagccaagaatgtatttctcagtttgctgaaaaaacaaaaaagtgaacaacaccct
agcactgagaaggacgaagaacatttaagggatgaactaagaaaagtgaataaacagcta
acaaaactgaaccctcaggatatcaagaagttgagccccagtgaaatggacaacatgaga
tttcttttgactacaaaacaacagttagaaaacagacttaaaaggctaactgctatccct
tctgcatgtgcttacactgatcctaaagcagtggatgaagatactttgaggaagattttt
catcaacttaattttgagaaaagaggctatctgcagcaaatgatggcactgaggggcatt
gggtatcatcatggatctatggctaccaaggaaagacaagtagtggaaatgcttttcagg
ctggggtatatcaaggtagtcacagctacttcaacacttggtctgggaatcaacatgcca
tgtaaatctgttgtctttgctgaagattctgtctttttagacaccctacattacaagcag
ttgtcaggacgagctggaagacggggacaagatatgattggaaatgtgttcttctatgat
atcccactgcacaaaattgaaaggcttatcaaatccaatgtacctcagttgaaaggccag
tttcctctgaatgttaccttaatattgagactcatgctgttggttgcgaaggctgatgac
aaagcagatgccagagcaaaggcattgtcagtgttgaagcactcactgatgtcattcaga
aaagaaagatatgctgaaatattaaaaatttattttatattttccttgcaatttcttatc
aaagagggctacttggatcaagaaggtaaccccataggatttgctggacttgtgacacat
ttgtactaccatgaaccttcaaattttgttttagcgagctttcttgtgaaaggtttattc
cacaaattgtgccagccaattaaaggctcaactgttttttcagaagaagtcctggaaaag
ctagtcctcattctagcaaacctatttgggagaaagcatcttccagcttgctcaatgaaa
tataaacaaacatcttgccagtcaaaggtctttctagaagatctgccaaaagactttgcg
gatgctgtaaatgagtacaacaccaaagtagagaaaaattttgctcattttcttctgaca
attgccaagctggcagatatggaacaagaatacagacttccactgtcaaagacagatttt
acatctaagaattggcatggctctgaactagcatcttatttgatggacaacaccaaaagc
atatctgccatctcaccttttgcatgcttatctggagtggttgataacgatctatttcat
ggggagataattaataaagctgttttacgttctcttggaattaatgtcacaaactgtccc
ctgttttatttgaacaagtatgataatcaaggaaggaagaggccactcaatgcatatgca
ctggacttttataagaatggttccttgactgataactggttaaatgaaagagatgcttac
tacgcactcaaggatttttcactcctcattaagtctattggaacatcactgagtgaactg
tgtgataatccaaatgataatgttctactggcatttcggcaactgggtgcaatctatgaa
gagaaactgaagtctgttacctga
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