Rissa tridactyla (black-legged kittiwake): 128910205
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Entry
128910205 CDS
T09443
Symbol
COL25A1
Name
(RefSeq) collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
rtd00536
]
128910205 (COL25A1)
Glycosaminoglycan binding proteins [BR:
rtd00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128910205 (COL25A1)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
128910205
NCBI-ProteinID:
XP_054059135
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Position
5:complement(57500467..57634160)
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AA seq
561 aa
AA seq
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MDGKLGQPGPQGPPGPKGEKGDQGDQGPRMVFPKINHGFLSADQQLIKRRLIKGDQGQAG
PPGPPGPPGPRGPPGDTGKDGPRGMPGIPGEPGKPGEQGLSGPQGPPGQKGSVGVPGVPG
RDGQVGEPGLPGIAGEKGAAGLKGDPGERGEKGDTGENGPKGDTGEKGDPGSSAAGIKGE
PGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGTKGDRGEAGPIGKGER
GEPGVPGPKGKTGEPGSRGPKGSKGDTGDRGDTGSAGPRGPPGQKGDQGATEIIDYNGNI
REALQRIATLTVTGPPGPPGPQGLQGPKGESGSPGTPGVDGEQGPKGSKGDTGDPGMPGE
KGGIGLPGLPGANGMKGEKGDVGLPGAQGPSMIGPPGPPGPHGPPGPMGPHGLPGPKGEP
GLNGLKGLKGEPGQKGDRGPLGLPGASGLDGKPGPRGVDGPVGPHGPAGPKGDRGEKGTV
GEPGPRGPYGLPGKDGEPGLDGFPGPRGEKGDIGEKGEKGEKGKKGKKGPKGEKGEQGAP
GLDAPCPLGPDGLPMPGCWQK
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atggatggaaagctgggtcagcctggtcctcaaggccctcctggtccaaaaggcgagaag
ggagatcaaggtgatcagggccctcggatggtgttccctaaaatcaatcatgggtttctc
tctgctgatcagcagctcattaaacgccgcctcattaagggggaccaaggacaagctggc
ccccctgggcctccagggccaccaggacccagaggtcccccaggagatactggcaaagat
ggtcctcgtgggatgcctggcattccgggcgagccaggaaaaccaggagaacaaggattg
tcaggacctcaggggccgccaggacaaaagggttctgttggagtgcctggtgttccaggg
agagacggacaagtgggggagcctggtttgcctggcatagcgggagagaagggagcagca
gggcttaagggtgaccctggagaaagaggagaaaagggggataccggagaaaatggaccg
aagggtgacacaggagaaaagggtgaccctggttcttctgctgcaggaattaagggtgaa
cccggtgaatctggacggcctggacaaaagggtgaaccaggtcttcctgggcttcctgga
ctccctgggataaagggtgaaccaggtttcattggtccacaaggagaacctgggttgcca
gggctgccaggaacaaagggtgacagaggagaggcaggccctattgggaagggcgagcga
ggtgaacctggagttcctggaccaaaggggaaaacaggtgaacctggatctagaggcccc
aaagggtcaaagggcgatacaggtgacagaggtgacacaggatctgcaggtccacgggga
ccacctggacagaaaggtgatcaaggtgcaacagagataattgattataatggcaatatc
cgtgaagctctgcagaggattgccaccctgactgtcacggggccaccaggaccaccagga
ccccaagggctgcaagggccaaagggtgaatcaggatccccgggaactccaggagttgac
ggggagcagggtcctaaaggctcaaaaggagatacaggtgatcctggaatgcctggggaa
aagggaggaattggactgcctggcctgccaggagccaatggtatgaaaggcgaaaaagga
gacgttggtttgcctggtgcccaaggtccttcaatgataggaccacctggaccaccaggg
ccacatggtcctccaggccctatgggacctcatggactgcctggcccaaagggtgaacca
gggttaaatggtcttaaaggattgaagggtgaaccaggtcaaaagggtgacagagggccc
cttggtcttccaggagcatctggcttagacggaaagccaggaccccggggtgtagatggc
ccagttggtccccatggtcctgcaggtcctaaaggagacagaggtgaaaagggaactgtg
ggtgaacctggacccagaggaccatacggcttgcctggcaaagatggcgagcctggcctt
gatggtttccctggtcctcgaggagaaaagggtgatataggagaaaagggagaaaagggg
gaaaagggaaagaaaggcaaaaaggggcctaaaggggagaaaggagaacagggtgctcct
ggattagatgcaccttgcccgttgggtcccgatggattaccaatgcctggctgttggcaa
aagtga
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