Rissa tridactyla (black-legged kittiwake): 128911035
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Entry
128911035 CDS
T09443
Symbol
COL4A3
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-3(IV) chain
KO
K06237
collagen type IV alpha
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd04510
Focal adhesion
rtd04512
ECM-receptor interaction
rtd04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128911035 (COL4A3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128911035 (COL4A3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128911035 (COL4A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rtd04147
]
128911035 (COL4A3)
00536 Glycosaminoglycan binding proteins [BR:
rtd00536
]
128911035 (COL4A3)
Exosome [BR:
rtd04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
128911035 (COL4A3)
Glycosaminoglycan binding proteins [BR:
rtd00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128911035 (COL4A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
128911035
NCBI-ProteinID:
XP_054061237
LinkDB
All DBs
Position
6:23161514..23228027
Genome browser
AA seq
1750 aa
AA seq
DB search
MPAEEGRTDERRLPAVPEAGDEEWGRGEGWPARPRPGXLSPPQGAGSAEAGAKQPPGQKP
RAGGGQSLSAAGRRVGSAEMAGRGCPSRLAPLLLLALLWPGRAAGAESCVCKGKSPCFCD
SMKGNKGEKGFPGVPGPPGLRGFPGPEGPPGPQGPKGSPGLTGLVGPKGIRGLPGLPGFS
GPPGLPGEPGTVGPPGRSGVPGCNGTKGDQGFPGPPGRRGAPGIPGIPGIKGEKGCPAEV
YNQGYGAKGDPGLPGMPGLQGAQGAQGYPGELGPQGPPGPSGMPGKAGPPGPKGLMGLKV
IGTKGRKGDTGLTGPPGPPGTVIVTLSGPDNMTDLKGEKGEKGSRGLPGPVGFTGPDGDS
QSEKGDRGEPGAQGKPGKEGAPGPPGLPGQKGEQGKPGAAGRQGAKGMKGNTGPPGACGR
TEYYDYVVGEKGDEGPPGPPGPKGQRGMPGPQGPPGDAGRPGVTRPGLRGPPGFPGPKGI
KGEKGQTGLCVVGPPGLPGITGKPGSVGLPGPPGEPGRVTFRTGLPGLPGEPGCTGPPGP
PGDIGMKGDEARVCTDCSYIPGIPGRPGSPGPHGQDGMPGREGTTGLKGSPGSPGAPGFP
GAQGPPGFRGDQGHKGSKGEPGYVYPEGPKGERGDPGARGDKGRKGSSGFLGRPGSKGSK
GSKGEKGLAGSKGDRGLPGLPGGLGLPGEMGLPGLPGYGPQGIRGFKGSKGIPGPPGLPG
EAGLKGETSRITPLPALPGPQGPDGLPGPPGVPGRAGARGQQGDSGHPGPTGDTGFPGLG
FPGNPGPKGNKGLAGGRGSPGCEGKIGDPGRAGNLGQPGEKGDPGVVIPGEPGRLGSPGG
HGIPGSKGDTGFPGLPGLPGSAGHDGDDGLRGDRGSPGVPGDPGFPGKPAECLIGLPGLP
GGQGATGPPGGRGLQGSKGKLGPPGLSIPGIYGKPGEPGLIGLQGNTGLPGPKGQSGRTG
ISGVPGLRGEPGIMGLLGIPGPPGTIGRPGIPGIRGSSGIPGLKGRKGFLGAKGEPGDKG
FPGPSETLVGIGNKGERGLKGVQGRMGLRGEKGHAGVQGPPGLDGSEGVPGLPGVKGFMG
LPGVPGRQGFPGAPGNKGDMGIPGPNGEKGSPGFPGPSGDPGPPGYGGFPGDKGDPGHPS
AGPPGEPGPKGDPGPPGVLGSKGEKGSQGHPGHKGVPGPHGIRGETGSAGIPGKLGPPGD
TGVKGQQGCPGQQGITGPPGAVGDPGRKGLVGERGNQGQDGMPGPPGVKGEPGAPGTGIP
GLRGVPGRRGIKGDMGLPGFPGPPGMKGHQGDQGPIGPPGLVGLPGFQGATGMAITGQKG
NRGIAGADGRPGAPGFPGPPGLPTLSMKGIKGVRGADGIPGSTGPAGDTGPPGPKGIEGR
PGYPGARGDPGFLGFPGVKGEKGNRGPPGPQGVEGPRGPKGQRGPPGVPGRIFSIPGSKG
PPGLPGIPGAPGDQGIQGIPGLQGPKGLKGLPGSFGHPGQPGLPGPKGDRGFPGQRGEPG
LIGFPGLQGLPGSPGSIIAGPTRRGFIFTRHSQSTKIPSCPHGTSQIYVGYSLLFVQGNE
RAHGQDLGTAGSCLQRFTTMPFLFCSTNDVCSFASRNDYSYWLSTATVMPVDMAPISGRA
LEPHISRCVVCEGAAMVIAVHSQTTAVPPCPEGWVSLWKGFSFVMYTSAGSEASGQALAS
PGSCLEEFRAIPFIECHGRGTCNYYTNSYSFWLASLNPRRMFRRPLSQTLKAGELENIIS
RCQVCMKRPV
NT seq
5253 nt
NT seq
+upstream
nt +downstream
nt
atgcccgctgaggagggacggacggacgaaaggcggctgccggcggtgcctgaagcagga
gacgaggagtgggggagaggagaggggtggcccgccaggccccgccccggtnccctgtcc
ccaccccagggtgccgggagcgccgaagcgggtgcgaagcagcccccaggccaaaagccg
cgggcgggcggggggcagagtctgagcgccgcgggacgccgcgtaggcagcgccgagatg
gctggcaggggctgccccagccgcctggcgccgctgctgctgctcgccctgctgtggccg
ggccgcgccgcgggggctgagagctgcgtatgcaaaggtaaaagtccctgcttttgcgat
agcatgaaaggtaataagggtgaaaaaggctttcctggtgttccaggtccacctggtctt
agaggctttcctggtccagaagggcctccaggaccacagggaccaaagggttctccaggg
cttaccggcttagttgggcccaaaggcatacgaggactcccaggactacctggattttca
ggtcccccaggccttccaggtgaaccgggaactgttggtcctcctgggcgctcgggtgtt
ccaggatgcaacggcacaaagggcgatcaaggttttccaggtcctccaggtagaagaggt
gctccaggcattccaggtattcctggcatcaaaggagagaaggggtgccctgcagaggta
tataaccaggggtatggtgcaaaaggtgatcctggattaccaggaatgcctggacttcag
ggtgcccagggtgctcaaggatatccgggagaacttggaccacagggccctccaggacct
tcaggcatgccaggaaaagcaggacctcctggacctaagggtcttatgggactgaaagta
ataggaaccaaaggaaggaagggtgacactgggttaactggaccccctggaccaccagga
accgttattgtgacattaagtggaccagacaacatgacggacttgaaaggagagaaagga
gaaaaaggatcaagaggacttccaggaccagtggggtttacagggccagatggtgattct
caaagtgaaaagggtgaccgaggagaacccggagcacagggtaaacctggaaaagaaggt
gccccgggtccacctggcttaccgggacaaaagggtgaacagggcaaaccaggagcggct
ggcaggcaaggagctaaggggatgaaaggaaacactggtccgcctggagcttgtggtcga
acagagtattatgattatgtggttggtgaaaaaggagatgaaggaccccctggacctcca
ggaccaaaaggtcaacgtggcatgcctgggccacagggtcctcctggagatgctggtaga
ccaggtgtgacaagacctggtctgagaggtccccctggatttcctgggccaaaaggaata
aaaggagagaaaggacaaactggcttgtgtgttgtaggccctccaggactacctggtatt
actggcaaacctggttctgttggattaccaggtcctccaggagaaccaggtagagtaaca
tttcgaacaggcctgccaggacttcctggagagccagggtgcacaggacctccgggacct
ccaggagatattggcatgaaaggtgatgaagctcgcgtgtgtactgattgcagctatatt
ccaggaatacctggtcgtcctggttctcctgggccacatggccaagatggcatgcctggt
agagaaggaacaacaggtctaaaaggttctccaggttctccaggagcaccagggtttcca
ggagctcaaggacctccaggttttagaggagatcaaggacataaaggatcaaaaggtgag
ccaggatatgtgtatccagaagggccaaaaggtgagagaggagatccaggggccagggga
gacaaaggaagaaaaggttcaagtggatttctgggaagacctggctctaaaggatccaag
ggctctaaaggtgaaaagggattggctggttcaaaaggagatagaggactccctggattg
cccggtggtcttggtcttcctggagagatggggcttcctggattgccaggatatggacca
caaggaataagaggcttcaaaggctctaaaggaatacctggtccacctggattacctgga
gaagctggtctgaaaggagagaccagtaggataactccattacctgcattgccaggacct
caaggaccagatggtttacctggacccccaggagtgcctggtagagctggagcaagaggc
cagcaaggtgattcaggacatccaggcccaacaggtgacacaggctttccagggcttggg
tttcctggaaacccaggtccaaaaggaaataaaggacttgcaggaggcagagggtcacca
ggttgtgaaggaaagatcggagatccaggccgagctggaaacctaggacaaccaggagaa
aagggtgacccaggcgtggttattcctggagagccaggtagactgggttcaccaggaggt
catggcattcctggctcaaaaggtgatactggatttccaggacttccaggcctaccaggg
agtgctggacatgatggtgatgatggcctaagaggagatcgtggctcacctggagttcct
ggagatccaggttttccagggaaacctgctgaatgtcttattggcctgccaggtttgcca
ggtggccagggagctacaggcccaccaggaggaagaggtttgcaaggttcaaaaggaaaa
cttggccctcctggcttgagtatcccgggaatctatggaaaacccggggaacctggatta
ataggtcttcagggaaatacaggattacctggtcccaagggacagtctggaaggacagga
atctctggtgtgccaggcttgaggggagagccaggtataatgggcctgttaggaattcct
ggaccccctggcacaattggaagaccaggcatcccgggtatcagaggttcttctggcatc
ccaggactaaaaggaagaaaagggtttcttggagcaaaaggtgaaccaggtgataaaggt
tttcctggaccatctgagaccttggttggtattgggaataaaggagaacgaggcttaaaa
ggagttcaaggaagaatgggtctaagaggagagaaaggacatgccggtgtgcaaggtccc
ccaggtcttgatgggtctgaaggagtacctggtctaccaggcgtcaaaggatttatgggt
cttccaggggttcctggaagacaaggattcccaggtgcaccaggaaacaaaggggacatg
ggaattccaggtccaaatggagagaaaggatctcccggctttccaggaccatcaggtgac
cctggtccaccaggctatggtggctttccaggtgacaagggagatcctgggcacccgtct
gctgggcctccaggagaacctggtccaaagggagatccaggccctccgggagttttgggc
agcaaaggagaaaaaggatcccaaggtcatccaggtcataaaggagtaccaggaccacat
gggatcagaggggaaactggaagtgcaggaatcccagggaagcttggacctcctggagat
actggtgtcaaaggacagcagggctgcccaggacaacagggcattacaggccctcctggt
gctgttggagaccctggaagaaaaggacttgttggtgaaaggggtaatcaaggtcaggat
ggtatgcctggtcccccaggagtaaagggagaaccaggagcaccagggacaggaatccct
ggccttcgaggtgttcctggtcgtagaggaatcaaaggggacatgggactgcctggtttt
cctgggccaccaggtatgaaaggtcatcaaggtgatcaaggacccattggacctcctggc
ttagtggggttacctggattccaaggcgcaacaggcatggcaattactggccaaaaaggg
aatagaggtattgctggtgcagatggaagaccaggtgctcctggttttccagggcctcct
ggtcttcccactctcagcatgaaaggaatcaaaggcgttagaggggcagatggcatacca
gggtcaacaggcccagccggcgacactggtcctcccggtccaaaaggaattgaaggtcga
ccaggttatcctggtgctagaggggaccctggatttcttggattcccaggtgtaaaagga
gaaaagggtaatcgaggaccccctggaccacaaggtgtagaaggaccaaggggaccaaag
ggccagcgtggtccacctggagtccctgggagaatattctccatcccaggaagcaagggt
cctcctggactgccaggaatcccaggagcaccaggtgatcaaggaattcaagggattcct
ggactacaaggacctaaaggattaaaaggtttaccaggaagttttggtcatccaggtcaa
ccaggactgcctggtccaaaaggagacaggggatttccaggacaaagaggagaacctgga
ctgattggctttccaggtctacaggggttacctggatcaccaggttctatcattgctggt
ccaacaagaagaggttttatctttacccggcatagtcaatcaacaaagattccttcatgc
ccacatgggacatcgcagatctatgttggctattcactgctttttgtacaaggaaatgaa
cgagcacatggacaagatcttggaacagctggtagctgcttgcagagatttaccaccatg
ccattcttattctgtagcaccaatgatgtttgtagttttgcttctcgcaatgactattca
tactggctgtcaactgcaacagtaatgccagtagatatggcaccgatttctggcagggca
ctagaaccccatataagcaggtgtgttgtctgtgaaggagctgcaatggtaatagcagtt
cacagccaaacaactgcagttcctccgtgtccagaaggctgggtatctctctggaagggt
ttttcttttgttatgtatacaagtgccggctcagaagcttctggccaagcattggcatct
cctggatcttgtttggaagaatttcgagctatcccattcatagagtgccatggcaggggg
acgtgcaactactacacaaattcctacagcttctggttggcatcattaaatccaagaaga
atgttcaggagacctctgtcacagactttgaaagcaggagaactagaaaatatcatcagc
cgctgtcaggtctgcatgaagagaccagtctaa
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integrated database retrieval system
