Rissa tridactyla (black-legged kittiwake): 128911035
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Entry
128911035 CDS
T09443
Symbol
COL4A3
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-3(IV) chain
KO
K06237
collagen type IV alpha
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd04382
Cornified envelope formation
rtd04510
Focal adhesion
rtd04512
ECM-receptor interaction
rtd04518
Integrin signaling
rtd04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128911035 (COL4A3)
04518 Integrin signaling
128911035 (COL4A3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128911035 (COL4A3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128911035 (COL4A3)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
128911035 (COL4A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rtd04147
]
128911035 (COL4A3)
00536 Glycosaminoglycan binding proteins [BR:
rtd00536
]
128911035 (COL4A3)
Exosome [BR:
rtd04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
128911035 (COL4A3)
Glycosaminoglycan binding proteins [BR:
rtd00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128911035 (COL4A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
128911035
NCBI-ProteinID:
XP_054061237
LinkDB
All DBs
Position
6:23161514..23228027
Genome browser
AA seq
1750 aa
AA seq
DB search
MPAEEGRTDERRLPAVPEAGDEEWGRGEGWPARPRPGXLSPPQGAGSAEAGAKQPPGQKP
RAGGGQSLSAAGRRVGSAEMAGRGCPSRLAPLLLLALLWPGRAAGAESCVCKGKSPCFCD
SMKGNKGEKGFPGVPGPPGLRGFPGPEGPPGPQGPKGSPGLTGLVGPKGIRGLPGLPGFS
GPPGLPGEPGTVGPPGRSGVPGCNGTKGDQGFPGPPGRRGAPGIPGIPGIKGEKGCPAEV
YNQGYGAKGDPGLPGMPGLQGAQGAQGYPGELGPQGPPGPSGMPGKAGPPGPKGLMGLKV
IGTKGRKGDTGLTGPPGPPGTVIVTLSGPDNMTDLKGEKGEKGSRGLPGPVGFTGPDGDS
QSEKGDRGEPGAQGKPGKEGAPGPPGLPGQKGEQGKPGAAGRQGAKGMKGNTGPPGACGR
TEYYDYVVGEKGDEGPPGPPGPKGQRGMPGPQGPPGDAGRPGVTRPGLRGPPGFPGPKGI
KGEKGQTGLCVVGPPGLPGITGKPGSVGLPGPPGEPGRVTFRTGLPGLPGEPGCTGPPGP
PGDIGMKGDEARVCTDCSYIPGIPGRPGSPGPHGQDGMPGREGTTGLKGSPGSPGAPGFP
GAQGPPGFRGDQGHKGSKGEPGYVYPEGPKGERGDPGARGDKGRKGSSGFLGRPGSKGSK
GSKGEKGLAGSKGDRGLPGLPGGLGLPGEMGLPGLPGYGPQGIRGFKGSKGIPGPPGLPG
EAGLKGETSRITPLPALPGPQGPDGLPGPPGVPGRAGARGQQGDSGHPGPTGDTGFPGLG
FPGNPGPKGNKGLAGGRGSPGCEGKIGDPGRAGNLGQPGEKGDPGVVIPGEPGRLGSPGG
HGIPGSKGDTGFPGLPGLPGSAGHDGDDGLRGDRGSPGVPGDPGFPGKPAECLIGLPGLP
GGQGATGPPGGRGLQGSKGKLGPPGLSIPGIYGKPGEPGLIGLQGNTGLPGPKGQSGRTG
ISGVPGLRGEPGIMGLLGIPGPPGTIGRPGIPGIRGSSGIPGLKGRKGFLGAKGEPGDKG
FPGPSETLVGIGNKGERGLKGVQGRMGLRGEKGHAGVQGPPGLDGSEGVPGLPGVKGFMG
LPGVPGRQGFPGAPGNKGDMGIPGPNGEKGSPGFPGPSGDPGPPGYGGFPGDKGDPGHPS
AGPPGEPGPKGDPGPPGVLGSKGEKGSQGHPGHKGVPGPHGIRGETGSAGIPGKLGPPGD
TGVKGQQGCPGQQGITGPPGAVGDPGRKGLVGERGNQGQDGMPGPPGVKGEPGAPGTGIP
GLRGVPGRRGIKGDMGLPGFPGPPGMKGHQGDQGPIGPPGLVGLPGFQGATGMAITGQKG
NRGIAGADGRPGAPGFPGPPGLPTLSMKGIKGVRGADGIPGSTGPAGDTGPPGPKGIEGR
PGYPGARGDPGFLGFPGVKGEKGNRGPPGPQGVEGPRGPKGQRGPPGVPGRIFSIPGSKG
PPGLPGIPGAPGDQGIQGIPGLQGPKGLKGLPGSFGHPGQPGLPGPKGDRGFPGQRGEPG
LIGFPGLQGLPGSPGSIIAGPTRRGFIFTRHSQSTKIPSCPHGTSQIYVGYSLLFVQGNE
RAHGQDLGTAGSCLQRFTTMPFLFCSTNDVCSFASRNDYSYWLSTATVMPVDMAPISGRA
LEPHISRCVVCEGAAMVIAVHSQTTAVPPCPEGWVSLWKGFSFVMYTSAGSEASGQALAS
PGSCLEEFRAIPFIECHGRGTCNYYTNSYSFWLASLNPRRMFRRPLSQTLKAGELENIIS
RCQVCMKRPV
NT seq
5253 nt
NT seq
+upstream
nt +downstream
nt
atgcccgctgaggagggacggacggacgaaaggcggctgccggcggtgcctgaagcagga
gacgaggagtgggggagaggagaggggtggcccgccaggccccgccccggtnccctgtcc
ccaccccagggtgccgggagcgccgaagcgggtgcgaagcagcccccaggccaaaagccg
cgggcgggcggggggcagagtctgagcgccgcgggacgccgcgtaggcagcgccgagatg
gctggcaggggctgccccagccgcctggcgccgctgctgctgctcgccctgctgtggccg
ggccgcgccgcgggggctgagagctgcgtatgcaaaggtaaaagtccctgcttttgcgat
agcatgaaaggtaataagggtgaaaaaggctttcctggtgttccaggtccacctggtctt
agaggctttcctggtccagaagggcctccaggaccacagggaccaaagggttctccaggg
cttaccggcttagttgggcccaaaggcatacgaggactcccaggactacctggattttca
ggtcccccaggccttccaggtgaaccgggaactgttggtcctcctgggcgctcgggtgtt
ccaggatgcaacggcacaaagggcgatcaaggttttccaggtcctccaggtagaagaggt
gctccaggcattccaggtattcctggcatcaaaggagagaaggggtgccctgcagaggta
tataaccaggggtatggtgcaaaaggtgatcctggattaccaggaatgcctggacttcag
ggtgcccagggtgctcaaggatatccgggagaacttggaccacagggccctccaggacct
tcaggcatgccaggaaaagcaggacctcctggacctaagggtcttatgggactgaaagta
ataggaaccaaaggaaggaagggtgacactgggttaactggaccccctggaccaccagga
accgttattgtgacattaagtggaccagacaacatgacggacttgaaaggagagaaagga
gaaaaaggatcaagaggacttccaggaccagtggggtttacagggccagatggtgattct
caaagtgaaaagggtgaccgaggagaacccggagcacagggtaaacctggaaaagaaggt
gccccgggtccacctggcttaccgggacaaaagggtgaacagggcaaaccaggagcggct
ggcaggcaaggagctaaggggatgaaaggaaacactggtccgcctggagcttgtggtcga
acagagtattatgattatgtggttggtgaaaaaggagatgaaggaccccctggacctcca
ggaccaaaaggtcaacgtggcatgcctgggccacagggtcctcctggagatgctggtaga
ccaggtgtgacaagacctggtctgagaggtccccctggatttcctgggccaaaaggaata
aaaggagagaaaggacaaactggcttgtgtgttgtaggccctccaggactacctggtatt
actggcaaacctggttctgttggattaccaggtcctccaggagaaccaggtagagtaaca
tttcgaacaggcctgccaggacttcctggagagccagggtgcacaggacctccgggacct
ccaggagatattggcatgaaaggtgatgaagctcgcgtgtgtactgattgcagctatatt
ccaggaatacctggtcgtcctggttctcctgggccacatggccaagatggcatgcctggt
agagaaggaacaacaggtctaaaaggttctccaggttctccaggagcaccagggtttcca
ggagctcaaggacctccaggttttagaggagatcaaggacataaaggatcaaaaggtgag
ccaggatatgtgtatccagaagggccaaaaggtgagagaggagatccaggggccagggga
gacaaaggaagaaaaggttcaagtggatttctgggaagacctggctctaaaggatccaag
ggctctaaaggtgaaaagggattggctggttcaaaaggagatagaggactccctggattg
cccggtggtcttggtcttcctggagagatggggcttcctggattgccaggatatggacca
caaggaataagaggcttcaaaggctctaaaggaatacctggtccacctggattacctgga
gaagctggtctgaaaggagagaccagtaggataactccattacctgcattgccaggacct
caaggaccagatggtttacctggacccccaggagtgcctggtagagctggagcaagaggc
cagcaaggtgattcaggacatccaggcccaacaggtgacacaggctttccagggcttggg
tttcctggaaacccaggtccaaaaggaaataaaggacttgcaggaggcagagggtcacca
ggttgtgaaggaaagatcggagatccaggccgagctggaaacctaggacaaccaggagaa
aagggtgacccaggcgtggttattcctggagagccaggtagactgggttcaccaggaggt
catggcattcctggctcaaaaggtgatactggatttccaggacttccaggcctaccaggg
agtgctggacatgatggtgatgatggcctaagaggagatcgtggctcacctggagttcct
ggagatccaggttttccagggaaacctgctgaatgtcttattggcctgccaggtttgcca
ggtggccagggagctacaggcccaccaggaggaagaggtttgcaaggttcaaaaggaaaa
cttggccctcctggcttgagtatcccgggaatctatggaaaacccggggaacctggatta
ataggtcttcagggaaatacaggattacctggtcccaagggacagtctggaaggacagga
atctctggtgtgccaggcttgaggggagagccaggtataatgggcctgttaggaattcct
ggaccccctggcacaattggaagaccaggcatcccgggtatcagaggttcttctggcatc
ccaggactaaaaggaagaaaagggtttcttggagcaaaaggtgaaccaggtgataaaggt
tttcctggaccatctgagaccttggttggtattgggaataaaggagaacgaggcttaaaa
ggagttcaaggaagaatgggtctaagaggagagaaaggacatgccggtgtgcaaggtccc
ccaggtcttgatgggtctgaaggagtacctggtctaccaggcgtcaaaggatttatgggt
cttccaggggttcctggaagacaaggattcccaggtgcaccaggaaacaaaggggacatg
ggaattccaggtccaaatggagagaaaggatctcccggctttccaggaccatcaggtgac
cctggtccaccaggctatggtggctttccaggtgacaagggagatcctgggcacccgtct
gctgggcctccaggagaacctggtccaaagggagatccaggccctccgggagttttgggc
agcaaaggagaaaaaggatcccaaggtcatccaggtcataaaggagtaccaggaccacat
gggatcagaggggaaactggaagtgcaggaatcccagggaagcttggacctcctggagat
actggtgtcaaaggacagcagggctgcccaggacaacagggcattacaggccctcctggt
gctgttggagaccctggaagaaaaggacttgttggtgaaaggggtaatcaaggtcaggat
ggtatgcctggtcccccaggagtaaagggagaaccaggagcaccagggacaggaatccct
ggccttcgaggtgttcctggtcgtagaggaatcaaaggggacatgggactgcctggtttt
cctgggccaccaggtatgaaaggtcatcaaggtgatcaaggacccattggacctcctggc
ttagtggggttacctggattccaaggcgcaacaggcatggcaattactggccaaaaaggg
aatagaggtattgctggtgcagatggaagaccaggtgctcctggttttccagggcctcct
ggtcttcccactctcagcatgaaaggaatcaaaggcgttagaggggcagatggcatacca
gggtcaacaggcccagccggcgacactggtcctcccggtccaaaaggaattgaaggtcga
ccaggttatcctggtgctagaggggaccctggatttcttggattcccaggtgtaaaagga
gaaaagggtaatcgaggaccccctggaccacaaggtgtagaaggaccaaggggaccaaag
ggccagcgtggtccacctggagtccctgggagaatattctccatcccaggaagcaagggt
cctcctggactgccaggaatcccaggagcaccaggtgatcaaggaattcaagggattcct
ggactacaaggacctaaaggattaaaaggtttaccaggaagttttggtcatccaggtcaa
ccaggactgcctggtccaaaaggagacaggggatttccaggacaaagaggagaacctgga
ctgattggctttccaggtctacaggggttacctggatcaccaggttctatcattgctggt
ccaacaagaagaggttttatctttacccggcatagtcaatcaacaaagattccttcatgc
ccacatgggacatcgcagatctatgttggctattcactgctttttgtacaaggaaatgaa
cgagcacatggacaagatcttggaacagctggtagctgcttgcagagatttaccaccatg
ccattcttattctgtagcaccaatgatgtttgtagttttgcttctcgcaatgactattca
tactggctgtcaactgcaacagtaatgccagtagatatggcaccgatttctggcagggca
ctagaaccccatataagcaggtgtgttgtctgtgaaggagctgcaatggtaatagcagtt
cacagccaaacaactgcagttcctccgtgtccagaaggctgggtatctctctggaagggt
ttttcttttgttatgtatacaagtgccggctcagaagcttctggccaagcattggcatct
cctggatcttgtttggaagaatttcgagctatcccattcatagagtgccatggcaggggg
acgtgcaactactacacaaattcctacagcttctggttggcatcattaaatccaagaaga
atgttcaggagacctctgtcacagactttgaaagcaggagaactagaaaatatcatcagc
cgctgtcaggtctgcatgaagagaccagtctaa
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integrated database retrieval system
