KEGG   Rissa tridactyla (black-legged kittiwake): 128911038
Entry
128911038         CDS       T09443                                 
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain
  KO
K06237  collagen type IV alpha
Organism
rtd  Rissa tridactyla (black-legged kittiwake)
Pathway
rtd04382  Cornified envelope formation
rtd04510  Focal adhesion
rtd04512  ECM-receptor interaction
rtd04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:rtd00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    128911038 (COL4A4)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    128911038 (COL4A4)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    128911038 (COL4A4)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    128911038 (COL4A4)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:rtd04147]
    128911038 (COL4A4)
   00536 Glycosaminoglycan binding proteins [BR:rtd00536]
    128911038 (COL4A4)
Exosome [BR:rtd04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   128911038 (COL4A4)
Glycosaminoglycan binding proteins [BR:rtd00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   128911038 (COL4A4)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 128911038
NCBI-ProteinID: XP_054061246
LinkDB
Position
6:complement(23086359..23162086)
AA seq 1681 aa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NT seq 5046 nt   +upstreamnt  +downstreamnt
atggcattaacaaaggattcgtttgaacggattaagtggcttatcacagctgcctggtgg
ctgctgattgttttttcagcacaagaaattgacgggggaggatatgcatatattgaccct
tgtgggggacaggattgttcagtttgccggtgctttccagaaaaaggatcaagaggtcgg
cctggtgagctgggagctcagggtccgattgggtccttgggatctacaggactagctggt
ctgccaggggaaaaaggacggagaggtgagaatgggcagcctgggccagctggagaaaaa
ggtgataagggcccaactggagtcccgggatttcctggtttagacggtgttcctggatta
ccaggaagtgaaggacccaggggcaagcgtggttttgatggctacaatggctcaagagga
gatccaggacttccaggagaaaatggctatagtggaccaagaggtccttatggaaatcca
gggcaaaaaggagaaaaaggaaattccgtgtatgtttcatattttggaaaaggacctccg
ggagacagaggtgatcctggacaccctggcattcctggacctagagggtcgagaggtaca
acgggcccatctggatacccaggccaaccaggcttgcctggtattccaggttaccctggt
ttgccaggtgaacagggaaatccaggtattggagtggatggacaaaaaggggagccgggt
gacatcggacttcctgggccacctgggttaccactgttagttggacctcctggagctcag
ctgttcaaaggagaaaagggccaaaaaggactacctggagtaacaggatacagagggcca
cgtggacccaaaggtgtacttgggagaggagaaaagggtgaaaaaggcattcctggattc
cctggattgaggggtgatcctggttcttatggacctgcaggttttcctggaatgaagggg
gaaacaggatttgctggttttcctggacaacctggctatccaggcagacagggggatcca
ggagaaaaagggcccccaggtcctcctggagctgttggaactctgctgcctcctataaaa
ggtccacaaggagatcctggatttccaggtcctgctggtgatctggggtcagttggacca
attggtcctgcaggcccactaggaagaccaggagatgatggaacaagtctgcctggactg
ccaggagtaagtggggcaccaggacctcaaggttttcaaggtgaccctggtttccctgga
acaggtgaatcaattccaggaagacctggatttcctggaccaccaggcctaccaggacag
ccaggaagacaaggcttacctggactacctagtgtcatctgtactgacagagggatccca
ggagaacctggagcaaaaggtcagataggccttccgggaagaaaaggtgaaaaaggagaa
aagggaaatcaaggcctgtgctcatgtagtgctggtcctcctggtccccgtggtgtgcaa
ggacctccaggtactcaaggaaggaaaggacaaatgggatatcctggaagacatggagaa
aagggtgatccaggcttatccggtgcagtgggatcaccagggctccctggtatacctggt
tctgctggacaacatggtgaaaaaggagagaagggagatccaggaagagttagaataaaa
ggaataaaaggtgaaagaggtcctactggagttccaggatttccaggccaaagaggtaac
gatggcagagatggggaactaggattgcctggggaaaaaggagctgagggcgattctgga
gtaccgctaccaggtgataaaggattccctggggtcccaggacttcctgggataaaagga
cagatgggattgcctggtttggggtttcctggccctccaggagtcagaggtagccctgga
gactttggtgacactggtagtgttgggccacctggtccaaagggccagaaaggtgagact
gtctgcattacgctacgataccctggaaatccaggtcccccaggttttaaaggtgttcaa
ggaccaaagggtttaaaaggactccccggtcgccctggaccaaatggctttgttgggcaa
aaaggccatcaaggcaggccaggagcaggaatccctgggccagaaggctttcgaggcgaa
gctggtgatcctggtgatgaaggtgaaagaggacctacaattgatggtaaaaatggccct
ccaggtccacctggcatagatggtcagaaaggtgttccaggtgataccacgtatggtcct
ccaggaatcccaggcaacaggggacttccaggaccccctggtgcacaaggagcaaggggt
gatccaggcattcctggacttcgaggacagcctggtaccccaggatttccaggtgccaaa
ggttttagaggcccagaaggtgatagaggagcaccaggctgtccaggcttccctggccca
ccatgtgacacgggcttaccagggccaccaggactcagaggtgtcacgggcctgccagga
cctcaaggcttaccaggctttaaaggtcagaggggagacaggggcctagctgggccacca
ggaatcaaaggtctgaaaggctcgcctggctcacaaggtcctccaggtcctccaggctcc
cgaggacttccaggatttccaggcaataaaggaccacctggtttgccaggacaaccagga
agcaaagggattcaaggaccccaaggattcccaggactcccaggaacacaaggcccaatg
ggaatctccggtgtaaagggcgaagaaggaaaaatgggtccacctgggcctagtggagaa
cgtggagatatgggattaaaaggtgagagagggcctccaggagacagtggcagcattaac
atccgtctcgagaaaggacaaaagggggaaccagggtttcctggtgagagcgggtttaga
ggtgaaagaggtgaaaaaggcaatactggtttcagaggcactccaggctttccagggaag
aacggtgtcccaggactgccaggtgaccatggtgacaccggactgatggggtttccagga
tcacggggtttcccaggaccaaagggctttaaaggaattacgggttttcaaggacaacca
ggtgaccagggtgacgttggcttaccaggaatccctggaaatccaggactgaccggccca
aaaggatctaaaggcaagagaggtgacccaactcctctgcttggttcacctggtcgaaaa
gggcctcccggagatccaggattaccaggactctgtggattcccaggagagaagggttca
ccaggtatccaagggcaacctggaagaccaggatccaagggtgaccctggatacccagga
atacctggatttccaggagctacaggtcctcagggatttccaggagaacctggagaaaga
gggaaacatggcattttgggacccccaggattgcaaggattacctggatcccaaggcagg
aaaggtcttcctggactgcccggactggatggcttggatggactaaaaggtcaaaaaggt
tctgcaggagttccaggtcaaagtgaaacagggcccccaggatacccaggagaacttgga
ccaaaaggagacagaggtgaacctggatggcctggtatttctattccaggttcccctgga
gaaaggggattcccaggattcccaggtagaagaggacctattggacccactggacctatg
ggaaaatctccttatagcgcttctcctggtcctccaggtgatcaaggaccacctggtttg
gatggcatcagaggtcatcctgggaatcctggtcctcctggagagactgtctttgtgcga
ggagatccaggcgatattggtattcgaggggcaccaggtaatcctgggcagcgagggcaa
caaggagccagaggtcttccagggaaccaaggaagaagaggcctgaagggtcctatggga
gtccatggcccgcagggtccacctggtgctataggacaaccaggagaccagggttctcaa
ggaaaacctggacccaaaggtcccccaggtttcataggtgaccctggtgaaccaggaaaa
atagatgattcatgcccttccatcccagggcctcctggggacgcagggcaaagaggacac
gatggctctgtaggattaccagggccaatgggccaccctggaccccaaggaggaaaagga
gaagaagggtcatgcggcctgccgggtcaagatggcttacctggggcacctggaccacca
ggtgaccaagggcatgtaggagagcaaggatatgctgggccacaaggtccacctggccag
actggtatcccaggaccaccaggcccccatattagatctgcgagtggattcttgcttgtc
cttcacagtcagtcagacagagaaccactctgtccacaggggatgccaaaattatggact
ggctatagtctgctgtacctggaaggacaagagaaagctcataatcaggatcttggtctg
gcaggatcttgtcttccagtgtttaacaccatgccctttgcttactgtaacatcaaccaa
gtttgttactatgccagtcgaaatgataagtcttactggttgtcgagtgccgctcctcta
ccgatgacaccactctctgaagaagaaatacagccatatataagcagatgtgctgtgtgt
gaggccccagcccaagcggtggcagttcacagccaagatcagtcaattcccccctgccca
gtgaactggagaagtctttggataggatattcttttttgatgcacactggatctggtgat
cagggtggtggacagtctctaatgtcacctggaagttgcctagaagacttcagatcagca
ccattcattgaatgccagggtcagcggggaacatgtcagttttttgctaatgaatacagt
ttctggctaacaacagtgatgcctgaattgcagtttgcatcagcccctctgtcaggaact
cttaaagaaggacaagagcagaggaaaaaaatcagtagatgccaggtatgtctgagacat
ggctaa

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