KEGG   Rissa tridactyla (black-legged kittiwake): 128911085
Entry
128911085         CDS       T09443                                 
Symbol
TRIM42
Name
(RefSeq) LOW QUALITY PROTEIN: tripartite motif-containing protein 42
  KO
K12018  tripartite motif-containing protein 42
Organism
rtd  Rissa tridactyla (black-legged kittiwake)
Brite
KEGG Orthology (KO) [BR:rtd00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:rtd01009]
    128911085 (TRIM42)
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:rtd04121]
    128911085 (TRIM42)
Protein phosphatases and associated proteins [BR:rtd01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     128911085 (TRIM42)
Ubiquitin system [BR:rtd04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRIM/RBCC proteins
    128911085 (TRIM42)
SSDB
Motif
Pfam: fn3 NOD2_WH Pur_ac_phosph_N
Other DBs
NCBI-GeneID: 128911085
NCBI-ProteinID: XP_054061315
LinkDB
Position
6:19642994..19652010
AA seq 717 aa
MQLMKRERDENGHLCSTWQCCSNCHYLTCPSRKXLYWHFLFASEPNCSCFPHPYEDKPCP
CCHCSCAEHANCWRCCCSCLNDPGCKCCCCGGENSACQYYESKCCRSSVHEPHQSRTPGT
CSVNTVLRFRTRNNASVLTPERKVSRHTFRDQFACPLCKQLFLHPLMVPHNHXCEKCITK
SKTKAEVTEDXYVIVCPVCSKAHCLPNINKIQLKYMRRHSFLRWRFDHSERPVYFETCRE
RKVASKRCRTRGINNCNECLHLNHSKNGAQDHIFTKAHTEDHEWHCLLHSNSDLSEYCLD
DHELTCGFCRNSLHNDHETISLAVACSRXAASLFDTIAKFRKVHTGVDNDLMEVILLKKI
FETFKDTKRKEIRNGFLKLRMVLQELEKKMMELLENVELKKQKEISKYLNDTSNQLSHMD
GLIQYSKQALKEESQVFLQSAHRLVKEIENATPSIFQSSPHVREDPXRKLQLSFDELFST
LQGLVPSLSGIKQTESKAEKYLYSFNPEIMVPRHSSTQKSKQATSFRSTNLNSVFDLGVL
PKDIVRXPSSNPPHHPTQSNEVCVYQDSACENARKERKYQFFNFSSLEPIDNESVPVPEL
VVIYQTAVYLRPAKIYWTCPTEDVDFFEVEFYEVARIGPGNIVQTQLADQLSKIQLXNLE
VHNLDPNTEYLFKVHAVNASCXEEWSEICKIIASEEYGKIRDVREAEEYSGGSAYTI
NT seq 2154 nt   +upstreamnt  +downstreamnt
atgcaattaatgaagagggagagggatgaaaatgggcatctctgttcgacctggcagtgc
tgctcaaactgccattacctgacttgcccaagcagaaagnncttgtattggcacttcttg
tttgccagtgagccgaactgcagctgtttcccacatccatatgaagacaaaccttgccca
tgctgccattgctcatgcgcagagcatgcaaattgctggcggtgctgctgctcttgttta
aatgacccaggctgcaaatgctgctgctgcggtggagagaactcagcatgtcagtattac
gaaagcaagtgctgcagaagctctgtccatgaaccacatcagtcaagaacaccaggaacc
tgttcagtaaataccgtgttaagatttagaactagaaataatgcatctgtccttacacca
gaaaggaaggtctccagacacactttccgtgaccagtttgcctgtccactgtgtaagcaa
ttgtttctccacccacttatggtgccgcacaatcatnnttgtgagaagtgcataactaaa
agcaagaccaaagctgaagtaactgaagacnnttacgtcattgtatgcccagtgtgtagc
aaagcacattgcctccctaacataaacaaaattcagctgaaatatatgcgcagacacagc
tttctgaggtggagatttgaccatagtgaaagaccagtctactttgaaacttgcagggag
agaaaagtggcaagcaaaagatgtagaacacgtggaataaataattgtaacgaatgtctg
catttaaatcatagcaagaatggtgctcaagaccacattttcaccaaagcacatacagaa
gatcatgagtggcactgcttactccacagcaactcagacctatctgaatactgtctggat
gaccatgaactgacctgtgggttctgcaggaactcactgcacaatgaccacgagactatt
tccttggcagttgcatgttcaaggtaggcagcttccctctttgatacaattgcaaaattt
agaaaagttcatactggagttgataatgatctaatggaagttatcctgttaaaaaagatt
ttcgagacctttaaggacaccaaaaggaaggagatcagaaatggattcttaaaattacgt
atggttcttcaagaactagaaaagaagatgatggagttgcttgaaaatgttgaacttaaa
aaacagaaagaaatttcaaaatacctaaatgatacatccaatcagctatcacatatggat
ggccttattcaatactctaaacaggctcttaaggaggaaagccaagtgtttctgcaatct
gcacaccgcttagtgaaagaaatagaaaatgcgactccttccattttccaatctagtcca
catgtaagagaagatccctgaagaaaacttcaactcagctttgatgaacttttctccact
ttacagggacttgtcccatcccttagtggaataaagcagacagaaagtaaagcagaaaaa
tatctgtattcttttaacccagagataatggttccaaggcattcaagtactcagaaatcc
aagcaagcaacatcgttccgaagcacaaatttaaattccgtgtttgatttaggtgttctg
cctaaagacattgtcagatgaccaagctctaaccctccccatcatcctacacagagtaat
gaagtgtgtgtgtaccaggattcagcttgtgaaaatgcaagaaaagaaagaaaatatcag
ttttttaacttttcaagtctagaacctatagacaatgaatcagtaccagtcccagaactt
gttgttatataccagactgctgtttacctgaggcctgccaaaatttactggacttgtccc
acagaagatgtggatttctttgaggtagagttttatgaagttgctcgtattggtcctggt
aacattgtccagacacaactagctgaccagctaagcaaaatacagctgtagaaccttgag
gtacataatctggatccaaatacagaatatctttttaaagtccatgctgtcaatgcaagt
tgttaagaagaatggagtgagatctgtaagataattgcttcagaggaatatgggaaaatc
agagacgtgagagaagcagaagagtattcagggggttctgcatacaccatatag

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