Rissa tridactyla (black-legged kittiwake): 128911401
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Entry
128911401 CDS
T09443
Symbol
ZSWIM8
Name
(RefSeq) zinc finger SWIM domain-containing protein 8 isoform X1
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rtd04121
]
128911401 (ZSWIM8)
Ubiquitin system [BR:
rtd04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul2 complex
Target recognizing subunit
128911401 (ZSWIM8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ZSWIM4-8_C
SWIM
Motif
Other DBs
NCBI-GeneID:
128911401
NCBI-ProteinID:
XP_054062196
LinkDB
All DBs
Position
6:complement(50003003..50070073)
Genome browser
AA seq
1822 aa
AA seq
DB search
MELMFAEWEDGERFSFEDSDRFEEDSLCSFISEAESLCQNWRGWRKQSAGPNSPTVKMKD
GLVIPLVELSAKQVAFHIPFEVVEKVYPPVPEQLQLRIAFWSFPENEEDIRLYSCLANGS
ADEFQRGEQLFRVRAVKDPLQIGFHLSATVVPPQMVPPKGAYNVAVMFDRCRITSCSCTC
GAGAKWCAHVVALCLFRIHNASAVCLRAPVSESLSRLQRDQLQKFAQYLISELPQQILPT
AQRLLDELLSSQSTAINTVCGAPDPTAGPSASDQSTWYLDESTLSDNIKKTLHKFCGPSP
VVFSDVNSMYLSSTEPPAAAEWACLLRPLRGREPEGIWNLLSIVREMFKRRDSNAAPLLE
ILTDQCLNYEQITGWWYSVRTSASHSSASGHTGRSNGQSEVAAHACASMCDEMVVLWRLA
VLDPTISPQRRRDLCSQLRQWQLKVIDNVKRGQHKKSLEKLFQGFKPAVEACYFNWEEAY
PIPGITYSSTDKKNSFCWVKAIQQRSCRLQCAETACEAGRTHGQEPGGSCLQPGDRLRPS
PQEPAVRPKELTGKRKVVSETPQRVLRRLSAEGDKAVYKTAVGKAKLPVNKGLTSKHSGK
RRMSSEDSSLEPDLAEMSLDDSSLALGAEASNTFSFTESPLSRSYRDTFEEDGGVYFSEG
PEPSVRSSSMAKKSPKDPVGEMGSGDDDLPSADENSGGVSLKPEEVGDNGAAGGGDDGEE
EDDYQVYYLNPQEVAKEDDDKAEGGNEEEQDIFAGIKPLEQENRMEILFACAEALYAHGY
SNEACRLTVELARDLLANPPDLKVEQPPTKGKKNKVSTSKQTWMATNTLSKAAFLLTVLS
ERLEYHNLAFRIGMFALELQRPPASTKALEVKLAYQESEIAALLKKIPLGTNEMNTIRGR
AEELREGTLCDYRPVLPLMLASFIFDVLCTPVVSPTGSRPPSRNWNNEMPGDEELGFEAA
VAALGMKTTVSEAEHPLLCEGTRREKGDLALALMITYKDDQSKLKKILDKLLDRESQTHK
PQTLSSFYSSSKPTVANQKSPSKHAAQSTAAIQQLPGTSVTQQAAVSTAVQSSPENFVEK
SAQESSQRSPCEPAAEATVLKQEGKVPSRLALGNRGGYNGRCWGSPVRQKKKHTGMASID
SSAPETTSDSSPTLSRRPLRGGWATTSWGRGQDSDSISSSSSDSLGSSSSSGSRRASGGA
RAKTVEVGRYKGRRLESHAPHVPNQPSEAAAHFYFELAKTVLIKAGGNSSTSIFTHPSSS
GGHQGPHRNLHLCAFEIGLYALGLHNFVSPNWLSRTYSSHVSWITGQAMEIGSAALNILV
ECWDGHLTPPEVASLADRASRARDSNMVRAAAELALSCLPHAHALNPNEIQRALVQCKEQ
DNLMLEKACMAVEEAAKGGGVYPEVLFEVAHQWYWLYEQTVGGTPAQREGATGCSASGAR
AASEASRGLTDNRVTSEPTTVTVAAAVTAAATVMPVISVGSTMYQQHTMAGPAMAHTHTQ
GLHPYTTLQTHIPCNPQYIGHTIQHMPRPAVFPVPGSAYPQGVHPAFIGAQYPYSVTTPS
LAATAVSFPGVPVPSMTQIAVHPYHSETGLSLSSNVAIGSVHAGSTFPAIQGASLTTLSS
QPNSLVTGGFPAEDEQHSQPVSPQGLHYLHSAYRVGMLALEMLGRRAHNDHPNNFSRSPP
YTEDVKWLLGLAAKLGVNYVHQFCVGAAKGVLSPFVLQEIIMEALQRLNPAHVHNHLRTP
AFHQLVQRCQQAYIQYIHHRLIHLTPADYDDFVNAIRSARSAFCLTPMGMMQFNDILQNL
KRSKQTKELWQRVSLEMTTFSP
NT seq
5469 nt
NT seq
+upstream
nt +downstream
nt
atggaactcatgtttgcagagtgggaggacggggagaggttttcatttgaagactctgat
cgctttgaagaagactctctttgttccttcatctctgaggcagagagcctttgccagaac
tggagaggatggaggaagcaatcggctggacccaattctcccactgtcaaaatgaaagat
gggctggtgatcccattggtggaactgtctgcaaaacaggttgcatttcacattccattt
gaggtggtggagaaagtttatcctccagtgcctgagcaactgcaacttcggattgccttc
tggagtttcccagaaaatgaagaagatatcagattgtactcgtgtttggcgaatggcagt
gcagatgagttccagcgaggggagcagctcttccgggtgagggctgtcaaagaccctctc
cagataggtttccatctgagtgccactgtggttcccccacagatggtgccacccaaaggt
gcgtacaacgtggcggtgatgtttgatcgatgcaggatcacgtcatgcagctgtacctgc
ggagctggggccaagtggtgtgctcacgtcgtggcgctctgcctcttccggatacacaat
gcatctgcggtatgcttacgagcacctgtttctgagtccttgtctcggctacaaagagac
caattgcaaaaatttgctcagtacctaatcagtgaacttccacaacagattcttccaact
gctcagcgcttgctggatgagctgttatcttctcagtctactgccatcaacacagtgtgt
ggagccccagatcccactgctggaccctctgcatcagatcaaagcacctggtacttagat
gagtctactctgagtgacaacataaagaaaacccttcataaattctgtggaccctctcct
gttgttttcagtgatgtgaattcaatgtatctctcttccacggagccaccagctgctgct
gagtgggcctgtctcctgcgtcccctgcgaggaagagagcctgaaggaatctggaacctg
ctttccattgtgcgggagatgtttaagagacgggatagcaatgcagctcctttgctggag
attttgactgatcagtgtctcaactatgagcagataaccggctggtggtacagtgtgcga
acatctgcatcacacagcagtgctagcgggcacacaggacgcagcaacggccagtcagaa
gtagctgctcatgcttgtgcgagtatgtgtgatgagatggtggttctttggaggctggct
gtccttgacccaactattagtccacagaggcgcagggacctttgctcacagctcagacag
tggcagctgaaagtcatagataatgttaagaggggtcagcacaagaaatcactggagaag
ctcttccagggtttcaagccagctgtggaagcctgttacttcaactgggaggaagcttat
cccattccggggatcacatatagcagcactgacaagaagaactcattctgttgggtaaag
gccatccagcagaggagctgccggttgcagtgtgcagaaactgcctgtgaggctggtaga
acccatggacaggagcccgggggatcatgtctgcagcctggggacaggctgcgtccctct
cctcaggagccagcagttcgtccaaaggaactaaccggaaagcggaaagttgtctctgaa
acaccacagagggttctgagacgactttccgcagagggtgataaagctgtgtataagact
gcagtgggcaaagcaaagttgccagtgaataaaggcttgaccagtaaacacagtgggaaa
cgccgcatgagcagtgaagacagctctttggagccggacttggcagagatgagcctggat
gacagcagcttggctctgggggcagaagccagcaacacatttagttttacagaaagccca
ttgagcagaagctacagggacacctttgaagaggatggtggggtgtacttctctgaggga
cctgagcccagtgtcaggagcagttccatggccaagaaatcgcccaaggatcctgtgggg
gaaatgggtagtggtgatgatgacctgccttctgcagatgagaacagcggtggtgtgagc
ctgaaaccagaagaagtgggagataatggtgcagcggggggaggggatgatggagaagag
gaagacgattaccaggtatactatctgaatccacaagaggtagccaaggaagatgatgac
aaagctgaagggggaaatgaagaggagcaggatatatttgctggtataaagcctctggaa
caggagaaccggatggagatcctgtttgcctgtgcagaggccctgtatgcccatggatac
agtaatgaagcatgccgcttaactgtagagctcgccagggacctactggccaaccctcca
gatctcaaagtggaacagccaccaactaagggcaaaaagaacaaggtatcaaccagcaag
cagacgtggatggcaaccaacaccttgtccaaagctgctttcttgctgactgtgctaagt
gagcggctggagtaccataacctggccttccgaataggaatgtttgctctggagctgcag
agaccacctgcctctacaaaggctctggaggtgaagctggcgtatcaggagtctgagatt
gcagccctcttgaagaagattcccttgggcactaatgagatgaacactattcgaggaaga
gctgaagaactgcgagaagggacactatgtgattaccgtcctgtcctgcctctgatgttg
gctagctttatatttgatgtcctgtgcactccagtggtttctcctacaggctctagaccc
ccaagccgtaattggaataatgaaatgcctggagacgaagagcttggttttgaggcagct
gttgctgctcttggcatgaaaacaactgtcagtgaagcagaacatcctctgttgtgtgag
ggcacccgaagggagaaaggggatctggcactagcgctgatgattacttacaaggatgat
cagtctaagctgaagaagattttagacaaactcctggacagagagagtcaaactcacaag
ccacagactctgagttccttctactcatccagcaagcctacagtagcaaatcaaaaatct
ccttccaaacatgctgcccagtccactgcagctatccagcagcttccagggacttctgtc
actcagcaagctgctgtaagcactgcagtccagagcagtcctgagaacttcgtggagaag
agtgcacaggagagctctcagaggtccccctgtgagccagccgcggaggccactgtcctg
aaacaagagggaaaggtccccagtcgcctggcccttggaaaccgaggtggatacaatggg
agatgctggggttcacctgtcaggcagaagaagaaacacacaggcatggctagtattgac
agcagtgctcctgaaaccacctctgacagttctccgacgctcagtcggcgtccactacgt
gggggatgggcaacaacatcctggggcagaggacaggacagtgacagcatcagcagttct
tcaagtgattcgctgggatcttcctcatccagtggcagtaggagagccagtgggggagcc
cgtgcaaagactgtggaagttggaaggtataaagggaggcgattggagagtcatgctcct
catgtcccaaaccagccttcagaggcagctgctcacttctactttgaattggccaagaca
gtccttatcaaagcaggtggaaatagcagtacctccatcttcacccacccctcctccagt
ggtgggcaccagggaccacaccggaaccttcacctctgcgccttcgagattgggctgtat
gcactagggctgcacaactttgtgtctcccaactggctgtctcgaacttactcctcccat
gtctcttggatcacagggcaggccatggagattggtagcgcagccttgaacatcttggtg
gagtgttgggacgggcatctgactcccccagaagtggcatcattggcagacagagcttca
cgggccagagactccaacatggtgcgggcagctgctgaactggcactcagctgcctgccc
catgcccatgccctgaacccaaatgagatccagagggctctggtgcagtgtaaggaacag
gacaatctgatgctggaaaaggcctgtatggcagtagaagaggcagccaaaggaggtggc
gtgtacccagaagtcctctttgaagtagctcaccagtggtactggctttatgaacagact
gttggtgggaccccagcccagagagaaggtgccactggctgcagtgccagcggtgcccga
gctgcctctgaagcatcacgtgggttgacagacaaccgggtgacctctgagccaaccact
gtaacagtggcagctgcggtgactgcggcagcgacagtcatgccggtgatctctgtgggg
tcgaccatgtaccagcagcatacaatggcggggccggcaatggcacatacacacacgcag
ggcctccacccttacaccacccttcagactcacatcccttgtaatccccaatatattgga
cacactatccagcacatgccgcgcccagctgtcttcccggtgcctggctcagcgtacccg
cagggtgtccatccagcattcataggagcacagtacccttattcggtaaccacaccatca
ttggcagctacagcagtgtcattccctggtgtgccggtcccatccatgacgcagatcgcg
gtgcatccctatcacagtgagacaggactatcactgtcttccaatgtagcgataggaagt
gtccatgcaggatcaacgttcccagcgattcagggggcttccttgacaactctgtcctca
cagcccaactcccttgttacagggggttttcctgccgaggatgagcagcacagtcagcct
gtgagcccccagggtctgcactacctccactccgcataccgagttgggatgctggctctg
gagatgcttggccgaagagctcacaacgaccatcccaacaacttctcccgtagcccaccc
tacacggaggatgtaaaatggctccttgggttagctgcgaagttaggtgtaaactacgtg
catcagttttgcgttggtgcagccaagggggtgctgagcccttttgtgctccaggagatc
atcatggaagctctccagaggctcaaccctgcccacgtgcacaaccacctgcgcacccca
gccttccaccagctggtgcagaggtgccagcaggcctacatacagtacatccatcatcgg
ctgatccatctcactccagctgactatgatgactttgtgaatgccatccgcagcgccaga
agcgccttctgcctgactcccatgggcatgatgcagtttaatgatattcttcagaaccta
aagcgcagcaagcagacaaaggagctgtggcaaagggtctctctggaaatgaccaccttc
tcgccgtga
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